Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb432040 Zea mays HOM05D001602 ORTHO05D001470 1.2e-132 476.5 238 100.0
Os04g0645500 Oryza sativa ssp. japonica HOM05D001602 ORTHO05D001470 8.2e-81 304.3 219 74.0
Nn1g00671 Nelumbo nucifera HOM05D001602 ORTHO05D001470 3.2e-40 169.5 202 51.0
TAR374G1398 Trochodendron aralioides HOM05D001602 ORTHO05D001470 7.8e-39 164.9 194 51.0
CDE11G1140 Ceratophyllum demersum HOM05D001602 ORTHO05D001470 9.5e-37 157.9 190 52.6
Cfa012366 Carpinus fangiana HOM05D001602 ORTHO05D001470 6.2e-36 155.2 224 45.1
PGR042G0660 Punica granatum HOM05D001602 ORTHO05D001470 6.2e-36 155.2 220 46.4
Haze_08317 Corylus avellana HOM05D001602 ORTHO05D001470 5.2e-35 152.1 195 47.7
Rhsim07G0121000 Rhododendron simsii HOM05D001602 ORTHO05D001470 1.7e-33 147.1 217 45.6
QL12p007555 Quercus lobata HOM05D001602 ORTHO05D001470 1.4e-32 144.1 193 47.2
TWI81G0159 Tripterygium wilfordii HOM05D001602 ORTHO05D001470 1.4e-32 144.1 221 44.8
MD06G1042700 Malus domestica HOM05D001602 ORTHO05D001470 3.2e-32 142.9 221 39.8
Duzib068G0907 Durio zibethinus HOM05D001602 ORTHO05D001470 4.2e-32 142.5 228 42.1
Hma1.2p1_0414F.1_g147600 Hydrangea macrophylla HOM05D001602 ORTHO05D001470 9.2e-32 141.4 193 44.6
COL.COLO4_17122 Corchorus olitorius HOM05D001602 ORTHO05D001470 2.7e-31 139.8 216 43.5
PSO384G4997 Papaver somniferum HOM05D001602 ORTHO05D001470 1.0e-30 137.9 198 41.9
Ciclev10033731m.g Citrus clementina HOM05D001602 ORTHO05D001470 1.3e-30 137.5 215 43.3
Aqoxy3G02562 Aquilegia oxysepala HOM05D001602 ORTHO05D001470 2.3e-30 136.7 193 44.6
Thecc.03G235700 Theobroma cacao HOM05D001602 ORTHO05D001470 3.0e-30 136.3 209 44.5
Potri.001G148200 Populus trichocarpa HOM05D001602 ORTHO05D001470 8.7e-30 134.8 219 43.8
RcHm_v2.0_Chr7g0207961 Rosa chinensis HOM05D001602 ORTHO05D001470 8.7e-30 134.8 189 44.4
ClCG10G001950 Citrullus lanatus HOM05D001602 ORTHO05D001470 9.6e-29 131.3 189 43.9
Gorai.004G189800 Gossypium raimondii HOM05D001602 ORTHO05D001470 1.6e-28 130.6 189 45.0
MELO3C013880.2 Cucumis melo HOM05D001602 ORTHO05D001470 2.1e-28 130.2 189 44.4
Lj2P248T46 Lonicera japonica HOM05D001602 ORTHO05D001470 3.6e-28 129.4 193 43.5
Gohir.D08G180900 Gossypium hirsutum HOM05D001602 ORTHO05D001470 6.2e-28 128.6 189 44.4
Gohir.A08G160600 Gossypium hirsutum HOM05D001602 ORTHO05D001470 3.1e-27 126.3 189 42.9
Cc08_g01690 Coffea canephora HOM05D001602 ORTHO05D001470 4.9e-25 119.0 187 41.7
CiPaw.11G086400 Carya illinoinensis HOM05D001602 ORTHO05D001470 7.8e-23 111.7 169 45.0
Mapoly0059s0066 Marchantia polymorpha HOM05D001602 ORTHO05D001470 1.0e-22 111.3 213 38.0
SEGI_27117 Sequoiadendron giganteum HOM05D001602 ORTHO05D001470 1.3e-22 110.9 191 39.3
GSVIVG01013248001 Vitis vinifera HOM05D001602 ORTHO05D001470 5.6e-21 105.5 116 52.6
SMO118G0160 Selaginella moellendorffii HOM05D001602 ORTHO05D001470 2.4e-19 100.1 207 38.2
Ah.12g053740 Amaranthus hybridus HOM05D001602 ORTHO05D001470 1.5e-18 97.4 185 38.4
TAR375G0707 Trochodendron aralioides HOM05D001602 ORTHO05D001470 7.6e-18 95.1 169 40.2
Zm00001eb218640 Zea mays HOM05D001602 ORTHO05D001470 4.9e-17 92.4 99 56.6
CDE05G3564 Ceratophyllum demersum HOM05D001602 ORTHO05D001470 2.1e-15 87.0 193 35.2
TAR356G0001 Trochodendron aralioides HOM05D001602 ORTHO05D001470 1.8e-14 84.0 151 38.4
TAR375G1144 Trochodendron aralioides HOM05D001602 ORTHO05D001470 6.7e-14 82.0 172 35.5
TAR375G0358 Trochodendron aralioides HOM05D001602 ORTHO05D001470 1.5e-13 80.9 161 37.3
Cre17.g747147 Chlamydomonas reinhardtii HOM05D001602 ORTHO05D001470 6.9e-11 72.0 128 43.0
Cre03.g210401 Chlamydomonas reinhardtii HOM05D001602 ORTHO05D001470 2.6e-10 70.1 126 40.5
Pp3c10_13020 Physcomitrium patens HOM05D001602 ORTHO05D001470 2.6e-10 70.1 202 33.2
MCO11G671 Micromonas commoda HOM05D005677 ORTHO05D006966 2.9e-09 66.6 142 40.8
BraA09t39853Z Brassica rapa HOM05D005677 ORTHO05D006966 4.9e-09 65.9 105 42.9
SalBow5G4467 Salvia bowleyana HOM05D005677 ORTHO05D006966 1.1e-08 64.7 105 45.7
Zm00001eb295360 Zea mays HOM05D001602 ORTHO05D001470 1.9e-08 63.9 199 38.2
Glyma.02G057000 Glycine max HOM05D005677 ORTHO05D006966 2.5e-08 63.5 124 39.5
SMO351G0211 Selaginella moellendorffii HOM05D001602 ORTHO05D001470 3.2e-08 63.2 142 37.3
Aa31LG4G18970 Aethionema arabicum HOM05D005677 ORTHO05D006966 4.2e-08 62.8 189 27.5
HanXRQChr03g0089261 Helianthus annuus HOM05D001602 ORTHO05D001470 4.2e-08 62.8 171 34.5
Pp3c26_2100 Physcomitrium patens HOM05D001602 ORTHO05D001470 5.5e-08 62.4 151 35.8
Aqoxy2G00391 Aquilegia oxysepala HOM05D001602 ORTHO05D001470 7.1e-08 62.0 158 36.1
BcaB01g00573 Brassica carinata HOM05D005677 ORTHO05D006966 9.3e-08 61.6 99 42.4
COL.COLO4_12119 Corchorus olitorius HOM05D001552 ORTHO05D003294 9.3e-08 61.6 198 33.3
CARHR160400 Cardamine hirsuta HOM05D005677 ORTHO05D006966 1.2e-07 61.2 97 41.2
PSO731G0124 Papaver somniferum HOM05D005677 ORTHO05D006966 2.1e-07 60.5 104 40.4
Cc00_g15860 Coffea canephora HOM05D001602 ORTHO05D001470 2.7e-07 60.1 180 36.1
Manes.02G226200 Manihot esculenta HOM05D001602 ORTHO05D001470 2.7e-07 60.1 199 33.2
Os06g0101100 Oryza sativa ssp. japonica HOM05D001602 ORTHO05D001470 2.7e-07 60.1 182 35.7
PSO210G3110 Papaver somniferum HOM05D005677 ORTHO05D006966 2.7e-07 60.1 104 41.3
Actinidia34680 Actinidia chinensis HOM05D001602 ORTHO05D001470 3.5e-07 59.7 171 35.7
Carub.0005s1724 Capsella rubella HOM05D005677 ORTHO05D006966 3.5e-07 59.7 99 40.4
MCO11G773 Micromonas commoda HOM05D001602 ORTHO05D006966 3.5e-07 59.7 140 35.7
Oeu027750.2 Olea europaea HOM05D001602 ORTHO05D001470 3.5e-07 59.7 194 33.5
C08p26060 Brassica napus HOM05D005677 ORTHO05D006966 4.6e-07 59.3 105 41.9
PRCOL_00003780 Prasinoderma coloniale HOM05D005677 ORTHO05D006966 4.6e-07 59.3 119 39.5
AT3G50850 Arabidopsis thaliana HOM05D005677 ORTHO05D006966 6.0e-07 58.9 97 39.2
Cre16.g670900 Chlamydomonas reinhardtii HOM05D005677 ORTHO05D006966 6.0e-07 58.9 95 47.4
Thhalv10010630m.g Eutrema salsugineum HOM05D005677 ORTHO05D006966 6.0e-07 58.9 99 42.4
Os05g0564100 Oryza sativa ssp. japonica HOM05D001602 ORTHO05D001470 6.0e-07 58.9 158 35.4
THA.LOC104811422 Tarenaya hassleriana HOM05D001602 ORTHO05D001470 7.9e-07 58.5 172 34.9
Manes.01G135600 Manihot esculenta HOM05D005677 ORTHO05D006966 1.0e-06 58.2 108 39.8
PGR102G2535 Punica granatum HOM05D005677 ORTHO05D006966 1.3e-06 57.8 196 31.6
SMO196G0271 Selaginella moellendorffii HOM05D001602 ORTHO05D001470 1.3e-06 57.8 142 29.6
Migut.L00520 Erythranthe guttata HOM05D005677 ORTHO05D006966 1.8e-06 57.4 105 42.9
BolC8t50224H Brassica oleracea HOM05D005677 ORTHO05D006966 2.3e-06 57.0 105 41.0
TAR625G0490 Trochodendron aralioides HOM05D005677 ORTHO05D006966 2.3e-06 57.0 85 44.7
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 3.0e-06 56.6 125 37.6
Sc16g0002730 Simmondsia chinensis HOM05D003467 ORTHO05D004220 3.0e-06 56.6 143 35.7
BcaC07g39550 Brassica carinata HOM05D005677 ORTHO05D006966 3.9e-06 56.2 105 41.0
Cfa004307 Carpinus fangiana HOM05D005677 ORTHO05D006966 3.9e-06 56.2 114 38.6
PRCOL_00001643 Prasinoderma coloniale HOM05D001602 ORTHO05D001470 3.9e-06 56.2 198 35.4
Actinidia19186 Actinidia chinensis HOM05D005677 ORTHO05D006966 5.1e-06 55.8 116 37.1
Cre12.g524550 Chlamydomonas reinhardtii HOM05D001602 ORTHO05D001470 5.1e-06 55.8 99 42.4
Eucgr.L02813 Eucalyptus grandis HOM05D005677 ORTHO05D006966 5.1e-06 55.8 147 35.4
Medtr8g077610 Medicago truncatula HOM05D005677 ORTHO05D006966 5.1e-06 55.8 99 37.4
LjContig00448g0024692 Lotus japonicus HOM05D005677 ORTHO05D006966 6.7e-06 55.5 99 37.4
Lalb_Chr16g0388501 Lupinus albus HOM05D005677 ORTHO05D006966 6.7e-06 55.5 125 35.2
Oeu042263.1 Olea europaea HOM05D005677 ORTHO05D006966 6.7e-06 55.5 101 35.6
PGR044G0265 Punica granatum HOM05D001602 ORTHO05D001470 6.7e-06 55.5 155 34.8
Sc10g0008650 Simmondsia chinensis HOM05D001602 ORTHO05D001470 6.7e-06 55.5 178 33.1
CiPaw.01G038100 Carya illinoinensis HOM05D005677 ORTHO05D006966 8.7e-06 55.1 114 36.0
HPP92_019510 Vanilla planifolia HOM05D005677 ORTHO05D006966 8.7e-06 55.1 133 39.1


User provided reference genes

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