Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 4.0e-148 528.1 268 100.0
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 3.6e-109 398.7 219 90.4
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 1.6e-96 356.7 236 75.4
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 1.5e-94 350.1 219 80.4
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 1.2e-93 347.1 218 79.4
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.1e-92 344.0 215 80.5
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.8e-92 343.2 216 76.9
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 3.1e-92 342.4 219 77.6
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 4.0e-92 342.0 219 77.6
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 6.9e-92 341.3 216 76.4
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 6.9e-92 341.3 215 77.2
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 9.0e-92 340.9 216 78.7
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 1.5e-91 340.1 216 77.8
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 1.5e-91 340.1 219 77.6
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 2.0e-91 339.7 222 76.1
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 2.6e-91 339.3 215 79.5
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 2.6e-91 339.3 233 72.5
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 2.6e-91 339.3 219 77.2
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 2.6e-91 339.3 214 77.1
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 3.4e-91 339.0 219 78.1
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 4.4e-91 338.6 249 69.9
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 7.6e-91 337.8 216 78.2
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 7.6e-91 337.8 219 77.6
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 9.9e-91 337.4 219 72.1
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 1.7e-90 336.7 223 75.8
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 2.2e-90 336.3 216 76.9
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 2.2e-90 336.3 216 76.4
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 2.9e-90 335.9 223 75.8
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 2.9e-90 335.9 217 76.0
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.9e-90 335.9 219 75.8
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.9e-90 335.9 219 75.8
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 4.9e-90 335.1 233 71.2
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 4.9e-90 335.1 216 77.8
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 4.9e-90 335.1 215 76.3
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 8.4e-90 334.3 219 76.7
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 1.4e-89 333.6 219 77.6
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 1.4e-89 333.6 216 77.8
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 4.2e-89 332.0 216 77.8
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 4.2e-89 332.0 217 74.2
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 5.4e-89 331.6 214 74.8
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 9.3e-89 330.9 216 76.4
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 1.2e-88 330.5 216 74.5
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 1.6e-88 330.1 214 75.2
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 2.1e-88 329.7 216 75.5
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 2.1e-88 329.7 215 75.8
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 2.7e-88 329.3 218 76.1
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 2.7e-88 329.3 218 76.1
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 4.6e-88 328.6 216 75.5
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 6.0e-88 328.2 216 75.0
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 6.0e-88 328.2 215 75.8
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 6.0e-88 328.2 215 75.3
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 7.8e-88 327.8 233 70.8
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 7.8e-88 327.8 216 76.4
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 7.8e-88 327.8 215 74.9
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.0e-87 327.4 216 74.5
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 1.0e-87 327.4 214 73.8
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 1.3e-87 327.0 216 76.4
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 1.7e-87 326.6 216 74.5
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 1.7e-87 326.6 216 74.1
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 2.3e-87 326.2 216 76.4
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 2.3e-87 326.2 237 71.7
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 3.0e-87 325.9 216 72.7
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 3.0e-87 325.9 216 74.1
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 3.9e-87 325.5 237 71.7
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 3.9e-87 325.5 215 74.4
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 5.1e-87 325.1 219 74.4
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 6.6e-87 324.7 216 75.0
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 6.6e-87 324.7 214 73.8
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 8.7e-87 324.3 219 74.9
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 8.7e-87 324.3 215 74.0
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.1e-86 323.9 215 74.0
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 3.3e-86 322.4 237 70.9
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 4.3e-86 322.0 214 74.8
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 5.6e-86 321.6 216 76.4
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 7.3e-86 321.2 216 75.0
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 1.3e-85 320.5 214 72.4
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 6.2e-85 318.2 215 72.1
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 8.1e-85 317.8 215 73.5
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 8.1e-85 317.8 222 71.6
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 8.1e-85 317.8 216 72.7
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 1.1e-84 317.4 216 72.7
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 1.1e-84 317.4 216 72.2
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 1.1e-84 317.4 224 71.0
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 1.4e-84 317.0 216 72.2
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 1.4e-84 317.0 216 72.2
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 3.1e-84 315.8 216 71.8
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 6.9e-84 314.7 216 71.3
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 6.9e-84 314.7 216 72.2
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 9.0e-84 314.3 216 72.2
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 1.5e-83 313.5 222 70.7
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 2.6e-83 312.8 216 71.3
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 5.8e-83 311.6 216 70.8
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 5.8e-83 311.6 216 70.8
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 5.8e-83 311.6 217 71.9
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 7.6e-83 311.2 216 71.8
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 1.3e-82 310.5 214 72.0
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 3.8e-82 308.9 216 70.8
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 3.8e-82 308.9 219 68.9
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 6.4e-82 308.1 216 69.9
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 2.4e-81 306.2 202 73.8
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 3.2e-81 305.8 219 72.1
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 5.4e-81 305.1 233 68.2
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 1.6e-80 303.5 219 71.2
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 2.7e-80 302.8 215 68.8
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 3.5e-80 302.4 218 70.2
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 6.0e-80 301.6 180 86.1
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 1.0e-79 300.8 215 69.8
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 3.0e-79 299.3 201 72.1
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 7.4e-78 294.7 197 75.1
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 6.9e-76 288.1 203 69.5
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 9.3e-73 277.7 215 64.7
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 6.0e-72 275.0 241 60.2
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 3.9e-71 272.3 214 61.7
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 3.3e-70 269.2 215 58.1
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 2.8e-69 266.2 215 59.1
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 1.4e-65 253.8 213 55.9
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 2.7e-64 249.6 213 55.9
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 4.6e-64 248.8 210 58.1
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 1.3e-63 247.3 219 62.1
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 1.8e-63 246.9 215 57.2
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.4e-60 237.3 227 58.6
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 2.9e-58 229.6 150 76.0
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 4.2e-57 225.7 162 67.3
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 2.7e-56 223.0 216 54.6
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 1.0e-55 221.1 143 74.8
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 2.5e-54 216.5 193 61.1
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 9.7e-54 214.5 166 65.7
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 4.8e-53 212.2 144 72.9
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 1.4e-49 200.7 174 57.5
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 1.9e-49 200.3 207 55.6
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 6.1e-40 168.7 87 94.3
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 2.2e-37 160.2 129 65.9
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.0e-34 151.4 122 62.3
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 1.2e-32 144.4 98 67.3
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 3.0e-31 139.8 144 53.5
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 4.0e-31 139.4 218 35.8
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 2.0e-27 127.1 132 56.1
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 1.6e-24 117.5 222 32.9
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 1.5e-22 110.9 70 74.3
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 3.1e-20 103.2 65 80.0
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 1.2e-19 101.3 54 87.0
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 4.5e-19 99.4 124 50.8
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 7.2e-17 92.0 127 47.2
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.8e-16 90.1 55 69.1
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 8.0e-16 88.6 61 68.9
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 3.0e-15 86.7 219 27.4
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 4.4e-14 82.8 97 52.6
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 1.1e-12 78.2 97 50.5
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 2.8e-08 63.5 99 45.5
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 1.0e-07 61.6 49 57.1
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 3.1e-07 60.1 45 64.4
SGA_v2.0_scaffold298G47630 Striga asiatica HOM05D004415 ORTHO05D005198 4.4e-06 56.2 66 47.0


User provided reference genes

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