Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb430390 Zea mays HOM05D002570 ORTHO05D002689 3.2e-42 174.9 101 100.0
Zm00001eb071700 Zea mays HOM05D002570 ORTHO05D002689 1.0e-32 143.3 103 76.7
Os04g0603400 Oryza sativa ssp. japonica HOM05D002570 ORTHO05D002689 1.1e-23 113.2 101 67.3
Zm00001eb414530 Zea mays HOM05D002570 ORTHO05D002689 3.8e-19 98.2 110 53.6
Os08g0241300 Oryza sativa ssp. japonica HOM05D002570 ORTHO05D002689 2.6e-15 85.5 67 70.1
Migut.D01154 Erythranthe guttata HOM05D002570 ORTHO05D002689 2.0e-12 75.9 74 52.7
Zm00001eb274770 Zea mays HOM05D002570 ORTHO05D002689 2.0e-12 75.9 66 57.6
MSTRG.22832 Avicennia marina HOM05D002570 ORTHO05D002689 5.9e-12 74.3 73 53.4
COL.COLO4_30895 Corchorus olitorius HOM05D002570 ORTHO05D002689 1.0e-11 73.6 101 43.6
Gohir.A05G143000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.0e-11 73.6 75 52.0
Gohir.D05G145400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.3e-11 73.2 75 52.0
Gorai.009G149300 Gossypium raimondii HOM05D002570 ORTHO05D002689 1.3e-11 73.2 75 52.0
Lsat_1_v5_gn_1_30640 Lactuca sativa HOM05D002570 ORTHO05D002689 2.9e-11 72.0 66 53.0
MBI14_g19442_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 5.0e-11 71.2 56 62.5
PGR102G1262 Punica granatum HOM05D002570 ORTHO05D002689 5.0e-11 71.2 94 43.6
RcHm_v2.0_Chr2g0131671 Rosa chinensis HOM05D002570 ORTHO05D002689 5.0e-11 71.2 94 41.5
Rhsim08G0200900 Rhododendron simsii HOM05D002570 ORTHO05D002689 6.5e-11 70.9 67 53.7
MSTRG.11212 Avicennia marina HOM05D002570 ORTHO05D002689 8.5e-11 70.5 56 60.7
Cc04_g05480 Coffea canephora HOM05D002570 ORTHO05D002689 8.5e-11 70.5 98 40.8
FvH4_6g28000 Fragaria vesca HOM05D002570 ORTHO05D002689 8.5e-11 70.5 74 52.7
FAN14G4539 Fragaria x ananassa HOM05D002570 ORTHO05D002689 8.5e-11 70.5 74 52.7
Oeu012866.1 Olea europaea HOM05D002570 ORTHO05D002689 8.5e-11 70.5 73 49.3
FAN02G4288 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.1e-10 70.1 74 51.4
MD09G1230400 Malus domestica HOM05D002570 ORTHO05D002689 1.1e-10 70.1 74 50.0
SalBow1G2645 Salvia bowleyana HOM05D002570 ORTHO05D002689 1.1e-10 70.1 56 58.9
Sopen03g036750 Solanum pennellii HOM05D002570 ORTHO05D002689 1.1e-10 70.1 92 42.4
Dinv23257 Davidia involucrata HOM05D002570 ORTHO05D002689 1.5e-10 69.7 71 52.1
FAN05G0139 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.5e-10 69.7 73 50.7
FAN05G5383 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.5e-10 69.7 73 50.7
Oeu033446.1 Olea europaea HOM05D002570 ORTHO05D002689 1.5e-10 69.7 56 58.9
Solyc03g117840.4 Solanum lycopersicum HOM05D002570 ORTHO05D002689 1.5e-10 69.7 92 42.4
PGSC0003DMG400014220 Solanum tuberosum HOM05D002570 ORTHO05D002689 1.5e-10 69.7 92 42.4
TAR383G0799 Trochodendron aralioides HOM05D002570 ORTHO05D002689 1.5e-10 69.7 89 43.8
CAN.G1008.23 Capsicum annuum HOM05D002570 ORTHO05D002689 1.9e-10 69.3 72 48.6
Nn8g40408 Nelumbo nucifera HOM05D002570 ORTHO05D002689 2.5e-10 68.9 73 50.7
Zm00001eb067680 Zea mays HOM05D002570 ORTHO05D002689 2.5e-10 68.9 74 45.9
HanXRQChr04g0099961 Helianthus annuus HOM05D002570 ORTHO05D002689 3.2e-10 68.6 64 53.1
MD17G1229300 Malus domestica HOM05D002570 ORTHO05D002689 3.2e-10 68.6 94 42.6
vmacro19088 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 3.2e-10 68.6 67 52.2
CSS0011601 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 4.2e-10 68.2 73 46.6
CSS0038527 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 4.2e-10 68.2 73 46.6
FAN09G2432 Fragaria x ananassa HOM05D002570 ORTHO05D002689 4.2e-10 68.2 74 50.0
HanXRQChr02g0033781 Helianthus annuus HOM05D002570 ORTHO05D002689 4.2e-10 68.2 59 55.9
Peaxi162Scf00314g00938 Petunia axillaris HOM05D002570 ORTHO05D002689 4.2e-10 68.2 91 40.7
Thecc.06G132900 Theobroma cacao HOM05D002570 ORTHO05D002689 4.2e-10 68.2 56 58.9
Duzib192G0671 Durio zibethinus HOM05D002570 ORTHO05D002689 5.5e-10 67.8 100 44.0
GSVIVG01016063001 Vitis vinifera HOM05D002570 ORTHO05D002689 5.5e-10 67.8 98 40.8
Potri.001G037400 Populus trichocarpa HOM05D002570 ORTHO05D002689 7.2e-10 67.4 93 41.9
CiPaw.01G051100 Carya illinoinensis HOM05D002570 ORTHO05D002689 9.4e-10 67.0 95 40.0
Dinv13685 Davidia involucrata HOM05D002570 ORTHO05D002689 9.4e-10 67.0 95 42.1
Dinv21443 Davidia involucrata HOM05D002570 ORTHO05D002689 9.4e-10 67.0 95 42.1
ECA247G0437 Erigeron canadensis HOM05D005398 ORTHO05D000476 9.4e-10 67.0 71 47.9
MBI16_g27293_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 9.4e-10 67.0 62 54.8
Manes.11G071400 Manihot esculenta HOM05D002570 ORTHO05D002689 9.4e-10 67.0 73 46.6
Sed0010699 Sechium edule HOM05D002570 ORTHO05D002689 9.4e-10 67.0 73 52.1
Nitab4.5_0004194g0090 Nicotiana tabacum HOM05D002570 ORTHO05D002689 1.2e-09 66.6 92 41.3
Nitab4.5_0007293g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 1.2e-09 66.6 92 41.3
QL05p081283 Quercus lobata HOM05D002570 ORTHO05D002689 1.2e-09 66.6 93 41.9
unitig_22.g6281 Utricularia gibba HOM05D002570 ORTHO05D002689 1.2e-09 66.6 56 55.4
MELO3C023490.2 Cucumis melo HOM05D002570 ORTHO05D002689 1.6e-09 66.2 73 49.3
Hma1.2p1_1208F.1_g267175 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 1.6e-09 66.2 70 48.6
CsaV3_7G031670 Cucumis sativus L. HOM05D002570 ORTHO05D002689 2.1e-09 65.9 73 49.3
Potri.003G187500 Populus trichocarpa HOM05D002570 ORTHO05D002689 2.1e-09 65.9 93 41.9
ClCG09G003530 Citrullus lanatus HOM05D002570 ORTHO05D002689 2.7e-09 65.5 73 49.3
Prupe.3G106900 Prunus persica HOM05D002570 ORTHO05D002689 2.7e-09 65.5 72 44.4
Sc10g0008480 Simmondsia chinensis HOM05D002570 ORTHO05D002689 2.7e-09 65.5 56 50.0
unitig_8.g3045 Utricularia gibba HOM05D002570 ORTHO05D002689 2.7e-09 65.5 66 50.0
Os04g0658200 Oryza sativa ssp. japonica HOM05D002570 ORTHO05D002689 4.7e-09 64.7 57 49.1
Actinidia18273 Actinidia chinensis HOM05D002570 ORTHO05D002689 6.1e-09 64.3 72 48.6
Migut.I00642 Erythranthe guttata HOM05D002570 ORTHO05D002689 6.1e-09 64.3 73 46.6
Actinidia08926 Actinidia chinensis HOM05D002570 ORTHO05D002689 8.0e-09 63.9 56 55.4
Eucgr.J03139 Eucalyptus grandis HOM05D002570 ORTHO05D002689 8.0e-09 63.9 99 39.4
Sabra03G0137200 Salix brachista HOM05D002570 ORTHO05D002689 8.0e-09 63.9 93 40.9
Ciclev10026849m.g Citrus clementina HOM05D002570 ORTHO05D002689 1.4e-08 63.2 99 40.4
Sed0009460 Sechium edule HOM05D002570 ORTHO05D002689 2.3e-08 62.4 74 51.4
Actinidia25496 Actinidia chinensis HOM05D002570 ORTHO05D002689 4.0e-08 61.6 90 40.0
Manes.04G097900 Manihot esculenta HOM05D002570 ORTHO05D002689 5.2e-08 61.2 67 46.3
DCAR_016323 Daucus carota HOM05D002570 ORTHO05D002689 8.8e-08 60.5 62 53.2
Nitab4.5_0007120g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 8.8e-08 60.5 89 38.2
Nitab4.5_0007120g0040 Nicotiana tabacum HOM05D002570 ORTHO05D002689 8.8e-08 60.5 89 39.3
Oeu036442.1 Olea europaea HOM05D002570 ORTHO05D002689 8.8e-08 60.5 65 41.5
unitig_27.g24959 Utricularia gibba HOM05D002570 ORTHO05D002689 1.1e-07 60.1 56 50.0
Atru.chr1.2751 Acer truncatum HOM05D002570 ORTHO05D002689 1.5e-07 59.7 56 53.6
ClCG10G012800 Citrullus lanatus HOM05D002570 ORTHO05D002689 1.5e-07 59.7 75 41.3
Lj3g0002113 Lotus japonicus HOM05D002570 ORTHO05D002689 1.5e-07 59.7 74 43.2
CsaV3_3G032640 Cucumis sativus L. HOM05D002570 ORTHO05D002689 2.0e-07 59.3 94 34.0
Phvul.005G184200 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 2.0e-07 59.3 71 43.7
Haze_15246 Corylus avellana HOM05D002570 ORTHO05D002689 3.3e-07 58.5 61 50.8
CAN.G1089.3 Capsicum annuum HOM05D002570 ORTHO05D002689 4.4e-07 58.2 67 44.8
SGA_v2.0_scaffold74G24622 Striga asiatica HOM05D002570 ORTHO05D002689 7.5e-07 57.4 56 46.4
Gohir.D10G050000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.3e-06 56.6 73 43.8
Gorai.011G053600 Gossypium raimondii HOM05D002570 ORTHO05D002689 1.3e-06 56.6 73 43.8
Solyc06g068620.3 Solanum lycopersicum HOM05D002570 ORTHO05D002689 1.3e-06 56.6 51 52.9
Sopen06g025880 Solanum pennellii HOM05D002570 ORTHO05D002689 1.3e-06 56.6 51 52.9
arahy.Tifrunner.gnm1.ann1.Z5UTBB Arachis hypogaea HOM05D002570 ORTHO05D002689 1.7e-06 56.2 72 38.9
Dinv25488 Davidia involucrata HOM05D002570 ORTHO05D002689 1.7e-06 56.2 64 46.9
arahy.Tifrunner.gnm1.ann1.ANT7GU Arachis hypogaea HOM05D002570 ORTHO05D002689 2.2e-06 55.8 81 38.3
CDE02G3789 Ceratophyllum demersum HOM05D002570 ORTHO05D002689 2.2e-06 55.8 69 44.9
Gohir.A10G049400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.2e-06 55.8 75 45.3
CANSAT64G2315 Cannabis sativa HOM05D002570 ORTHO05D002689 2.8e-06 55.5 75 42.7
Sabra06G0052300 Salix brachista HOM05D002570 ORTHO05D002689 3.7e-06 55.1 93 34.4
PGSC0003DMG400028926 Solanum tuberosum HOM05D002570 ORTHO05D002689 3.7e-06 55.1 59 47.5
arahy.Tifrunner.gnm1.ann1.G00P8D Arachis hypogaea HOM05D002570 ORTHO05D002689 4.8e-06 54.7 71 45.1
arahy.Tifrunner.gnm1.ann1.NFUI4Q Arachis hypogaea HOM05D002570 ORTHO05D002689 4.8e-06 54.7 53 45.3
Glyma.15G001900 Glycine max HOM05D002570 ORTHO05D002689 4.8e-06 54.7 89 32.6
Potri.018G131900 Populus trichocarpa HOM05D002570 ORTHO05D002689 4.8e-06 54.7 80 41.2
Sopen04g031620 Solanum pennellii HOM05D002570 ORTHO05D002689 6.3e-06 54.3 68 42.6
Cpa.g.sc21.103 Carica papaya HOM05D002570 ORTHO05D002689 8.2e-06 53.9 72 41.7
Potri.006G070200 Populus trichocarpa HOM05D002570 ORTHO05D002689 8.2e-06 53.9 79 39.2
TAR376G0812 Trochodendron aralioides HOM05D002570 ORTHO05D002689 8.2e-06 53.9 70 40.0


User provided reference genes

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