Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 0.0e+00 2140.9 1271 100.0
Zm00001eb012260 Zea mays HOM05D033178 ORTHO05D037852 1.5e-205 721.1 540 83.1
Zm00001eb207910 Zea mays HOM05D033178 ORTHO05D037852 3.2e-139 500.7 419 75.9
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 1.4e-25 123.2 172 49.4
Zm00001eb251590 Zea mays HOM05D021310 ORTHO05D003557 6.9e-17 94.4 271 34.7
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 2.2e-15 89.4 220 37.3
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 3.1e-09 68.9 46 73.9
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 6.9e-09 67.8 53 60.4
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 1.2e-08 67.0 114 42.1
Os07g0166500 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 1.2e-08 67.0 114 43.0
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 2.6e-08 65.9 46 71.7
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 2.6e-08 65.9 165 32.7
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 3.4e-08 65.5 107 45.8
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 4.5e-08 65.1 107 45.8
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 4.5e-08 65.1 108 38.9
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 7.7e-08 64.3 98 44.9
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 7.7e-08 64.3 47 68.1
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 7.7e-08 64.3 106 43.4
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 1.0e-07 63.9 191 31.4
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 1.3e-07 63.5 155 35.5
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 1.3e-07 63.5 109 39.4
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 1.3e-07 63.5 90 44.4
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 1.7e-07 63.2 107 44.9
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 2.2e-07 62.8 79 45.6
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 2.2e-07 62.8 109 37.6
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 2.2e-07 62.8 89 43.8
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 2.2e-07 62.8 45 64.4
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 2.2e-07 62.8 113 41.6
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 2.9e-07 62.4 114 39.5
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 5.0e-07 61.6 148 36.5
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 5.0e-07 61.6 102 37.3
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 6.5e-07 61.2 92 42.4
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 6.5e-07 61.2 113 40.7
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 6.5e-07 61.2 86 51.2
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 6.5e-07 61.2 132 35.6
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 6.5e-07 61.2 99 45.5
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 8.5e-07 60.8 103 43.7
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 8.5e-07 60.8 177 30.5
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 8.5e-07 60.8 44 68.2
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 8.5e-07 60.8 177 32.2
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 8.5e-07 60.8 96 47.9
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 1.1e-06 60.5 57 57.9
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 1.1e-06 60.5 91 44.0
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 1.4e-06 60.1 103 44.7
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 1.4e-06 60.1 86 48.8
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 1.4e-06 60.1 86 48.8
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 1.4e-06 60.1 85 47.1
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.4e-06 60.1 66 51.5
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 1.4e-06 60.1 293 29.0
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 1.4e-06 60.1 159 33.3
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 1.4e-06 60.1 69 52.2
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 1.4e-06 60.1 119 43.7
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 1.4e-06 60.1 104 39.4
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.9e-06 59.7 80 50.0
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 1.9e-06 59.7 73 50.7
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 1.9e-06 59.7 112 36.6
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 2.5e-06 59.3 196 31.1
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 2.5e-06 59.3 104 40.4
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 2.5e-06 59.3 50 58.0
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 3.2e-06 58.9 44 65.9
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 3.2e-06 58.9 171 35.7
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 3.2e-06 58.9 134 33.6
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 3.2e-06 58.9 293 28.7
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 4.2e-06 58.5 134 38.1
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 4.2e-06 58.5 155 35.5
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 4.2e-06 58.5 177 29.9
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 4.2e-06 58.5 96 44.8
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 4.2e-06 58.5 356 26.7
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 4.2e-06 58.5 157 31.8
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 4.2e-06 58.5 112 42.9
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 4.2e-06 58.5 132 35.6
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 4.2e-06 58.5 148 33.8
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 5.5e-06 58.2 208 30.8
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 5.5e-06 58.2 73 46.6
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 5.5e-06 58.2 73 46.6
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 5.5e-06 58.2 291 29.2
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 7.2e-06 57.8 95 42.1
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 9.4e-06 57.4 108 39.8
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 9.4e-06 57.4 205 30.7
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 9.4e-06 57.4 131 36.6


User provided reference genes

Program Settings