Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb427440 Zea mays HOM05D006574 ORTHO05D008210 2.7e-100 368.6 182 100.0
Os04g0534500 Oryza sativa ssp. japonica HOM05D006574 ORTHO05D008210 1.7e-70 269.6 174 79.3
TAR374G0842 Trochodendron aralioides HOM05D006574 ORTHO05D008210 1.9e-29 133.3 168 44.6
Sed0000081 Sechium edule HOM05D006574 ORTHO05D008210 2.1e-28 129.8 128 50.0
GSVIVG01027684001 Vitis vinifera HOM05D006574 ORTHO05D008210 2.1e-28 129.8 177 42.4
PSO782G0696 Papaver somniferum HOM05D006574 ORTHO05D008210 4.7e-28 128.6 147 48.3
CiPaw.13G032400 Carya illinoinensis HOM05D006574 ORTHO05D008210 8.1e-28 127.9 129 50.4
Manes.05G049100 Manihot esculenta HOM05D006574 ORTHO05D008210 1.4e-27 127.1 174 43.7
ClCG00G005790 Citrullus lanatus HOM05D006574 ORTHO05D008210 4.0e-27 125.6 128 49.2
Glyma.03G032200 Glycine max HOM05D006574 ORTHO05D008210 5.2e-27 125.2 128 50.8
PSO063G4205 Papaver somniferum HOM05D006574 ORTHO05D008210 5.2e-27 125.2 139 51.1
ATR0317G043 Amborella trichopoda HOM05D006574 ORTHO05D008210 8.9e-27 124.4 129 53.5
Cfa011166 Carpinus fangiana HOM05D006574 ORTHO05D008210 8.9e-27 124.4 136 50.7
Lj3g0024356 Lotus japonicus HOM05D006574 ORTHO05D008210 1.2e-26 124.0 128 52.3
QL04p038697 Quercus lobata HOM05D006574 ORTHO05D008210 1.2e-26 124.0 171 43.3
MELO3C005473.2 Cucumis melo HOM05D006574 ORTHO05D008210 1.5e-26 123.6 129 48.1
Hma1.2p1_0386F.1_g141830 Hydrangea macrophylla HOM05D006574 ORTHO05D008210 1.5e-26 123.6 149 46.3
Actinidia22763 Actinidia chinensis HOM05D006574 ORTHO05D008210 2.6e-26 122.9 152 46.7
VMungo0331G0612 Vigna mungo HOM05D006574 ORTHO05D008210 2.6e-26 122.9 128 49.2
Ciclev10021078m.g Citrus clementina HOM05D006574 ORTHO05D008210 3.4e-26 122.5 130 50.0
Medtr4g027070 Medicago truncatula HOM05D006574 ORTHO05D008210 3.4e-26 122.5 137 49.6
Prupe.2G138000 Prunus persica HOM05D006574 ORTHO05D008210 3.4e-26 122.5 165 46.1
TWI59G0788 Tripterygium wilfordii HOM05D006574 ORTHO05D008210 4.4e-26 122.1 128 50.0
Glyma.01G135900 Glycine max HOM05D006574 ORTHO05D008210 5.8e-26 121.7 128 50.0
Sabra14G0044800 Salix brachista HOM05D006574 ORTHO05D008210 1.3e-25 120.6 128 51.6
Cpa.g.sc129.21 Carica papaya HOM05D006574 ORTHO05D008210 2.2e-25 119.8 179 42.5
Eucgr.D02492 Eucalyptus grandis HOM05D006574 ORTHO05D008210 2.2e-25 119.8 146 47.9
Phvul.010G072300 Phaseolus vulgaris HOM05D006574 ORTHO05D008210 2.2e-25 119.8 128 47.7
Dinv43672 Davidia involucrata HOM05D006574 ORTHO05D008210 3.8e-25 119.0 177 41.2
CsaV3_5G004680 Cucumis sativus L. HOM05D006574 ORTHO05D008210 4.9e-25 118.6 129 47.3
Psat7g236040 Pisum sativum HOM05D006574 ORTHO05D008210 4.9e-25 118.6 128 49.2
CDE12G0059 Ceratophyllum demersum HOM05D006574 ORTHO05D008210 8.4e-25 117.9 125 48.8
Oeu000020.1 Olea europaea HOM05D006574 ORTHO05D008210 8.4e-25 117.9 132 45.5
Potri.014G061000 Populus trichocarpa HOM05D006574 ORTHO05D008210 1.1e-24 117.5 128 50.0
Ca_19840_v3 Cicer arietinum L. HOM05D006574 ORTHO05D008210 2.4e-24 116.3 128 49.2
Lalb_Chr07g0190251 Lupinus albus HOM05D006574 ORTHO05D008210 2.4e-24 116.3 128 48.4
arahy.Tifrunner.gnm1.ann1.KNQ922 Arachis hypogaea HOM05D006574 ORTHO05D008210 3.2e-24 115.9 135 48.1
MD07G1115500 Malus domestica HOM05D006574 ORTHO05D008210 4.2e-24 115.5 181 42.0
RcHm_v2.0_Chr1g0349101 Rosa chinensis HOM05D006574 ORTHO05D008210 7.1e-24 114.8 132 48.5
BcaB02g08163 Brassica carinata HOM05D006574 ORTHO05D008210 9.3e-24 114.4 141 46.8
TPR.G4993 Trifolium pratense HOM05D006574 ORTHO05D008210 9.3e-24 114.4 128 50.0
Solyc01g090900.3 Solanum lycopersicum HOM05D006574 ORTHO05D008210 2.7e-23 112.8 131 45.0
Sopen01g036640 Solanum pennellii HOM05D006574 ORTHO05D008210 2.7e-23 112.8 131 45.0
Thecc.01G382800 Theobroma cacao HOM05D006574 ORTHO05D008210 2.7e-23 112.8 177 39.0
Nitab4.5_0008963g0020 Nicotiana tabacum HOM05D006574 ORTHO05D008210 3.5e-23 112.5 135 44.4
COL.COLO4_12488 Corchorus olitorius HOM05D006574 ORTHO05D008210 4.6e-23 112.1 129 46.5
Peaxi162Scf00803g00013 Petunia axillaris HOM05D006574 ORTHO05D008210 4.6e-23 112.1 137 43.8
Thhalv10006432m.g Eutrema salsugineum HOM05D006574 ORTHO05D008210 1.0e-22 110.9 136 45.6
Lalb_Chr12g0207901 Lupinus albus HOM05D006574 ORTHO05D008210 1.0e-22 110.9 128 46.9
PGSC0003DMG400026016 Solanum tuberosum HOM05D006574 ORTHO05D008210 1.0e-22 110.9 133 45.1
THA.LOC104817218 Tarenaya hassleriana HOM05D006574 ORTHO05D008210 1.0e-22 110.9 130 46.9
AT3G60590 Arabidopsis thaliana HOM05D006574 ORTHO05D008210 1.7e-22 110.2 137 46.7
Rhsim07G0031300 Rhododendron simsii HOM05D006574 ORTHO05D008210 1.7e-22 110.2 132 46.2
CSS0016139 Camellia sinensis var. sinensis HOM05D006574 ORTHO05D008210 3.0e-22 109.4 133 48.9
CSS0019673 Camellia sinensis var. sinensis HOM05D006574 ORTHO05D008210 3.0e-22 109.4 133 48.9
FAN10G1171 Fragaria x ananassa HOM05D006574 ORTHO05D008210 3.0e-22 109.4 128 48.4
Nitab4.5_0000859g0210 Nicotiana tabacum HOM05D006574 ORTHO05D008210 3.0e-22 109.4 131 43.5
Lj7P535T34 Lonicera japonica HOM05D006574 ORTHO05D008210 3.9e-22 109.0 131 48.1
BraA04t15877Z Brassica rapa HOM05D006574 ORTHO05D008210 5.1e-22 108.6 141 46.1
FAN01G0938 Fragaria x ananassa HOM05D006574 ORTHO05D008210 5.1e-22 108.6 146 44.5
HanXRQChr03g0093261 Helianthus annuus HOM05D006574 ORTHO05D008210 5.1e-22 108.6 159 42.8
MSTRG.4912 Avicennia marina HOM05D006574 ORTHO05D008210 6.6e-22 108.2 159 39.6
Carub.0005s2733 Capsella rubella HOM05D006574 ORTHO05D008210 6.6e-22 108.2 137 46.7
CAN.G1872.8 Capsicum annuum HOM05D006574 ORTHO05D008210 6.6e-22 108.2 135 45.9
Duzib138G0195 Durio zibethinus HOM05D006574 ORTHO05D008210 6.6e-22 108.2 128 44.5
FAN03G3328 Fragaria x ananassa HOM05D006574 ORTHO05D008210 6.6e-22 108.2 146 44.5
Gohir.A11G078700 Gossypium hirsutum HOM05D006574 ORTHO05D008210 6.6e-22 108.2 148 41.2
vmacro13444 Vaccinium macrocarpon HOM05D006574 ORTHO05D008210 6.6e-22 108.2 132 45.5
vmacro22438 Vaccinium macrocarpon HOM05D006574 ORTHO05D008210 6.6e-22 108.2 132 45.5
ECA240G1589 Erigeron canadensis HOM05D006574 ORTHO05D008210 8.7e-22 107.8 137 45.3
FAN10G3734 Fragaria x ananassa HOM05D006574 ORTHO05D008210 8.7e-22 107.8 128 47.7
Gorai.007G088900 Gossypium raimondii HOM05D006574 ORTHO05D008210 8.7e-22 107.8 135 43.7
Cc02_g24430 Coffea canephora HOM05D006574 ORTHO05D008210 1.1e-21 107.5 143 44.8
DCAR_015883 Daucus carota HOM05D006574 ORTHO05D008210 1.1e-21 107.5 132 46.2
Gohir.D11G083300 Gossypium hirsutum HOM05D006574 ORTHO05D008210 1.1e-21 107.5 135 43.7
Actinidia22819 Actinidia chinensis HOM05D006574 ORTHO05D008210 1.5e-21 107.1 108 52.8
CANSAT56G2026 Cannabis sativa HOM05D006574 ORTHO05D008210 1.9e-21 106.7 131 45.8
Aqoxy5G03888 Aquilegia oxysepala HOM05D006574 ORTHO05D008210 2.5e-21 106.3 140 43.6
BcaC02g10162 Brassica carinata HOM05D006574 ORTHO05D008210 2.5e-21 106.3 139 43.9
C04p32070 Brassica napus HOM05D006574 ORTHO05D008210 2.5e-21 106.3 139 43.9
BolC4t24760H Brassica oleracea HOM05D006574 ORTHO05D008210 2.5e-21 106.3 139 43.9
PGR004G2311 Punica granatum HOM05D006574 ORTHO05D008210 3.3e-21 105.9 165 40.6
A04p01560 Brassica napus HOM05D006574 ORTHO05D008210 5.6e-21 105.1 141 44.0
Aa31LG10G14870 Aethionema arabicum HOM05D006574 ORTHO05D008210 7.3e-21 104.8 137 43.8
CANSAT56G0701 Cannabis sativa HOM05D006574 ORTHO05D008210 7.3e-21 104.8 131 45.0
CARHR171000 Cardamine hirsuta HOM05D006574 ORTHO05D008210 7.3e-21 104.8 138 47.1
Sp5g02640 Schrenkiella parvula HOM05D006574 ORTHO05D008210 9.6e-21 104.4 129 47.3
Ah.05g173830 Amaranthus hybridus HOM05D006574 ORTHO05D008210 5.3e-19 98.6 141 44.0
BolC8t51146H Brassica oleracea HOM05D006574 ORTHO05D008210 6.9e-19 98.2 134 43.3
C08p35540 Brassica napus HOM05D006574 ORTHO05D008210 9.0e-19 97.8 133 43.6
Gorai.004G163900 Gossypium raimondii HOM05D006574 ORTHO05D008210 2.0e-18 96.7 130 42.3
Lsat_1_v5_gn_3_129181 Lactuca sativa HOM05D006574 ORTHO05D008210 2.0e-18 96.7 114 46.5
HanXRQChr13g0423061 Helianthus annuus HOM05D006574 ORTHO05D008210 2.6e-18 96.3 132 42.4
EL10Ac1g00838 Beta vulgaris HOM05D006574 ORTHO05D008210 3.4e-18 95.9 144 39.6
BraA09t40713Z Brassica rapa HOM05D006574 ORTHO05D008210 7.6e-18 94.7 130 41.5
HanXRQChr13g0422971 Helianthus annuus HOM05D006574 ORTHO05D008210 7.6e-18 94.7 134 40.3
FAN06G2171 Fragaria x ananassa HOM05D006574 ORTHO05D008210 1.3e-17 94.0 62 72.6
FAN06G3094 Fragaria x ananassa HOM05D006574 ORTHO05D008210 1.3e-17 94.0 62 72.6
FvH4_7g11080 Fragaria vesca HOM05D006574 ORTHO05D008210 1.7e-17 93.6 60 75.0
AUR62013662 Chenopodium quinoa HOM05D006574 ORTHO05D008210 2.2e-17 93.2 124 44.4
unitig_8.g3385 Utricularia gibba HOM05D006574 ORTHO05D008210 2.2e-17 93.2 154 37.0
AUR62004165 Chenopodium quinoa HOM05D006574 ORTHO05D008210 2.9e-17 92.8 124 44.4
Migut.N01615 Erythranthe guttata HOM05D006574 ORTHO05D008210 4.9e-17 92.0 66 66.7
Migut.L01604 Erythranthe guttata HOM05D006574 ORTHO05D008210 6.4e-17 91.7 99 51.5
Gohir.D08G157700 Gossypium hirsutum HOM05D006574 ORTHO05D008210 1.1e-16 90.9 62 64.5
A09p52810 Brassica napus HOM05D006574 ORTHO05D008210 2.7e-15 86.3 130 40.0
Gohir.A08G136900 Gossypium hirsutum HOM05D006574 ORTHO05D008210 1.3e-14 84.0 59 66.1
SEGI_22327 Sequoiadendron giganteum HOM05D006574 ORTHO05D008210 2.8e-12 76.3 70 52.9
HPP92_027018 Vanilla planifolia HOM05D006574 ORTHO05D008210 8.1e-12 74.7 46 80.4
AagrBONN_evm.TU.Sc2ySwM_117.2636 Anthoceros agrestis HOM05D006574 ORTHO05D008210 1.4e-11 73.9 100 41.0
Nn6g33974 Nelumbo nucifera HOM05D006574 ORTHO05D008210 6.9e-11 71.6 48 75.0
SGA_v2.0_scaffold43G16514 Striga asiatica HOM05D006574 ORTHO05D008210 5.8e-10 68.6 46 69.6
Mapoly0010s0201 Marchantia polymorpha HOM05D006574 ORTHO05D008210 2.9e-09 66.2 58 56.9
TAR374G0556 Trochodendron aralioides HOM05D006574 ORTHO05D008210 1.9e-08 63.5 94 33.0
Sc02g0002790 Simmondsia chinensis HOM05D006574 ORTHO05D008210 3.2e-08 62.8 42 71.4
Hma1.2p1_0386F.1_g141840 Hydrangea macrophylla HOM05D006574 ORTHO05D008210 5.5e-08 62.0 108 36.1


User provided reference genes

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