Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb426550 Zea mays HOM05D000101 ORTHO05D000089 2.9e-78 295.0 138 100.0
Zm00001eb077540 Zea mays HOM05D000101 ORTHO05D000089 2.4e-32 142.5 103 72.8
Psat7g108120 Pisum sativum HOM05D000101 ORTHO05D000089 7.5e-10 67.8 87 41.4
Psat7g108160 Pisum sativum HOM05D000101 ORTHO05D000089 9.8e-10 67.4 71 46.5
Ciclev10024882m.g Citrus clementina HOM05D000101 ORTHO05D000089 1.9e-08 63.2 72 50.0
MBI04_g40087_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 7.1e-08 61.2 72 44.4
Medtr1g028720 Medicago truncatula HOM05D000101 ORTHO05D000089 1.6e-07 60.1 84 36.9
PGR044G1876 Punica granatum HOM05D000101 ORTHO05D000089 1.6e-07 60.1 82 41.5
Actinidia26187 Actinidia chinensis HOM05D000101 ORTHO05D003282 2.1e-07 59.7 117 32.5
MBI04_g34191_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 2.1e-07 59.7 72 40.3
ATR1120G092 Amborella trichopoda HOM05D000101 ORTHO05D000089 2.7e-07 59.3 70 45.7
Manes.11G052150 Manihot esculenta HOM05D000101 ORTHO05D000089 2.7e-07 59.3 78 39.7
ATR1120G102 Amborella trichopoda HOM05D000101 ORTHO05D017265 3.5e-07 58.9 70 45.7
Medtr4g091450 Medicago truncatula HOM05D000101 ORTHO05D000089 3.5e-07 58.9 70 42.9
MBI11_g25854_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 4.6e-07 58.5 72 44.4
TAR636G0948 Trochodendron aralioides HOM05D000101 ORTHO05D000089 4.6e-07 58.5 72 43.1
MBI18_g24147_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 6.0e-07 58.2 72 43.1
CARHR116440 Cardamine hirsuta HOM05D000101 ORTHO05D000089 7.8e-07 57.8 72 40.3
Ciclev10027635m.g Citrus clementina HOM05D000101 ORTHO05D000089 7.8e-07 57.8 70 44.3
Manes.11G052120 Manihot esculenta HOM05D000101 ORTHO05D000089 7.8e-07 57.8 78 38.5
PGR031G1182 Punica granatum HOM05D000092 ORTHO05D000089 7.8e-07 57.8 76 39.5
GSVIVG01038056001 Vitis vinifera HOM05D000101 ORTHO05D000089 7.8e-07 57.8 70 40.0
Ciclev10024859m.g Citrus clementina HOM05D000101 ORTHO05D000089 1.0e-06 57.4 79 39.2
Psat7g108240 Pisum sativum HOM05D000101 ORTHO05D000089 1.0e-06 57.4 70 42.9
ATR1089G099 Amborella trichopoda HOM05D000101 ORTHO05D000089 1.3e-06 57.0 72 43.1
Aqoxy4G00407 Aquilegia oxysepala HOM05D000101 ORTHO05D000089 1.3e-06 57.0 71 43.7
Aqoxy4G00933 Aquilegia oxysepala HOM05D000092 ORTHO05D000042 1.3e-06 57.0 89 36.0
PGR102G3083 Punica granatum HOM05D000101 ORTHO05D000089 1.7e-06 56.6 84 35.7
PGR044G2118 Punica granatum HOM05D000101 ORTHO05D000089 2.3e-06 56.2 85 36.5
PGR132G0003 Punica granatum HOM05D000101 ORTHO05D000089 2.3e-06 56.2 85 36.5
TWI38G0290 Tripterygium wilfordii HOM05D000092 ORTHO05D000089 2.3e-06 56.2 75 41.3
Actinidia29913 Actinidia chinensis HOM05D000101 ORTHO05D000089 3.0e-06 55.8 69 42.0
ATR1136G044 Amborella trichopoda HOM05D000101 ORTHO05D013159 3.0e-06 55.8 71 43.7
Ciclev10024858m.g Citrus clementina HOM05D000101 ORTHO05D000089 3.0e-06 55.8 69 39.1
Ciclev10024873m.g Citrus clementina HOM05D000101 ORTHO05D000089 3.0e-06 55.8 69 40.6
AT4G27190 Arabidopsis thaliana HOM05D000092 ORTHO05D000089 3.9e-06 55.5 70 38.6
MBI11_g05452_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 3.9e-06 55.5 72 41.7
MBI11_g13896_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 3.9e-06 55.5 72 43.1
CARHR048980 Cardamine hirsuta HOM05D000101 ORTHO05D000089 5.1e-06 55.1 69 43.5
CARHR234850 Cardamine hirsuta HOM05D000101 ORTHO05D000089 5.1e-06 55.1 72 38.9
Ciclev10024855m.g Citrus clementina HOM05D000101 ORTHO05D000089 5.1e-06 55.1 69 40.6
Ciclev10027483m.g Citrus clementina HOM05D000101 ORTHO05D000089 5.1e-06 55.1 70 47.1
MBI11_g42046_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 5.1e-06 55.1 72 43.1
Nn1g09664 Nelumbo nucifera HOM05D000101 ORTHO05D000089 5.1e-06 55.1 70 41.4
ATR0037G066 Amborella trichopoda HOM05D000101 ORTHO05D000089 6.6e-06 54.7 70 44.3
AL7G25610 Arabidopsis lyrata HOM05D000101 ORTHO05D000089 6.6e-06 54.7 72 38.9
QL03p023984 Quercus lobata HOM05D000101 ORTHO05D000089 6.6e-06 54.7 70 40.0
TAR362G1071 Trochodendron aralioides HOM05D000101 ORTHO05D000089 6.6e-06 54.7 69 42.0
MBI05_g36586_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 8.6e-06 54.3 83 38.6
MBI12_g17628_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D003282 8.6e-06 54.3 73 39.7
TAR627G1139 Trochodendron aralioides HOM05D000101 ORTHO05D000089 8.6e-06 54.3 69 39.1
TAR636G3068 Trochodendron aralioides HOM05D000101 ORTHO05D000089 8.6e-06 54.3 69 40.6
GSVIVG01020292001 Vitis vinifera HOM05D000101 ORTHO05D000089 8.6e-06 54.3 73 43.8


User provided reference genes

Program Settings