Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb426530 Zea mays HOM05D002428 ORTHO05D008664 1.8e-167 592.8 361 100.0
Os04g0514400 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D008664 4.8e-80 302.4 349 57.6
TAR365G0194 Trochodendron aralioides HOM05D002428 ORTHO05D008664 1.4e-60 237.7 196 63.3
Cpa.g.sc59.123 Carica papaya HOM05D002428 ORTHO05D008664 4.2e-60 236.1 199 58.8
Oeu006723.1 Olea europaea HOM05D002428 ORTHO05D008664 5.5e-60 235.7 297 49.2
PGSC0003DMG400029637 Solanum tuberosum HOM05D002428 ORTHO05D008664 7.1e-60 235.3 226 54.0
Sopen09g034720 Solanum pennellii HOM05D002428 ORTHO05D008664 9.3e-60 235.0 250 54.4
MBI07_g22621_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D008664 1.2e-59 234.6 298 46.6
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 1.6e-59 234.2 301 47.2
PGR142G3513 Punica granatum HOM05D002428 ORTHO05D008664 2.1e-59 233.8 285 49.5
Potri.001G049900 Populus trichocarpa HOM05D002428 ORTHO05D008664 2.7e-59 233.4 226 54.9
CANSAT78G1408 Cannabis sativa HOM05D002428 ORTHO05D008664 3.5e-59 233.0 215 57.7
Aa31LG9G3990 Aethionema arabicum HOM05D002428 ORTHO05D008664 4.6e-59 232.6 217 55.8
Gohir.D10G143300 Gossypium hirsutum HOM05D002428 ORTHO05D008664 4.6e-59 232.6 223 57.0
Thecc.04G206600 Theobroma cacao HOM05D002428 ORTHO05D008664 6.0e-59 232.3 243 53.1
MSTRG.9823 Avicennia marina HOM05D002428 ORTHO05D008664 1.3e-58 231.1 287 47.0
Ciclev10005170m.g Citrus clementina HOM05D002428 ORTHO05D008664 1.3e-58 231.1 226 54.0
QL06p024024 Quercus lobata HOM05D002428 ORTHO05D008664 1.3e-58 231.1 200 60.5
Prupe.1G004900 Prunus persica HOM05D002428 ORTHO05D008664 1.8e-58 230.7 329 45.6
RcHm_v2.0_Chr4g0385901 Rosa chinensis HOM05D002428 ORTHO05D008664 1.8e-58 230.7 278 47.8
Solyc09g091830.4 Solanum lycopersicum HOM05D002428 ORTHO05D008664 2.3e-58 230.3 250 54.4
Cc03_g07620 Coffea canephora HOM05D002428 ORTHO05D008664 1.5e-57 227.6 328 47.9
COL.COLO4_20264 Corchorus olitorius HOM05D002428 ORTHO05D008664 3.3e-57 226.5 202 57.9
Gorai.011G160100 Gossypium raimondii HOM05D002428 ORTHO05D008664 4.3e-57 226.1 231 55.0
Nitab4.5_0004974g0040 Nicotiana tabacum HOM05D002428 ORTHO05D008664 4.3e-57 226.1 245 53.1
TWI73G0822 Tripterygium wilfordii HOM05D002428 ORTHO05D008664 4.3e-57 226.1 248 56.9
Carub.0007s2880 Capsella rubella HOM05D002428 ORTHO05D008664 5.7e-57 225.7 193 60.1
Rhsim09G0054700 Rhododendron simsii HOM05D002428 ORTHO05D008664 7.4e-57 225.3 217 56.7
GSVIVG01029077001 Vitis vinifera HOM05D002428 ORTHO05D008664 7.4e-57 225.3 201 58.7
CSS0043127 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 9.6e-57 224.9 284 49.6
CSS0042862 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 1.6e-56 224.2 219 56.2
Duzib151G0475 Durio zibethinus HOM05D002428 ORTHO05D008664 2.1e-56 223.8 249 53.0
Gohir.A10G122700 Gossypium hirsutum HOM05D002428 ORTHO05D008664 2.8e-56 223.4 293 45.1
Rhsim09G0054100 Rhododendron simsii HOM05D002428 ORTHO05D008664 2.8e-56 223.4 217 56.2
Manes.15G051900 Manihot esculenta HOM05D002428 ORTHO05D008664 3.7e-56 223.0 221 57.9
Hma1.2p1_4144F.1_g338390 Hydrangea macrophylla HOM05D002428 ORTHO05D008664 8.2e-56 221.9 319 45.1
THA.LOC104808718 Tarenaya hassleriana HOM05D002428 ORTHO05D008664 8.2e-56 221.9 217 57.6
ATR0736G155 Amborella trichopoda HOM05D002428 ORTHO05D008664 1.4e-55 221.1 229 54.1
CiPaw.01G122800 Carya illinoinensis HOM05D002428 ORTHO05D008664 1.4e-55 221.1 319 43.6
Dinv38250 Davidia involucrata HOM05D002428 ORTHO05D008664 3.1e-55 219.9 350 43.1
unitig_747.g21693 Utricularia gibba HOM05D002428 ORTHO05D008664 5.3e-55 219.2 221 55.2
FvH4_4g00470 Fragaria vesca HOM05D002428 ORTHO05D008664 9.0e-55 218.4 278 47.5
FAN12G4076 Fragaria x ananassa HOM05D002428 ORTHO05D008664 9.0e-55 218.4 278 47.5
MD04G1005000 Malus domestica HOM05D002428 ORTHO05D008664 9.0e-55 218.4 194 61.3
CARHR219440 Cardamine hirsuta HOM05D002428 ORTHO05D008664 1.2e-54 218.0 195 58.5
SalBow8G5518 Salvia bowleyana HOM05D002428 ORTHO05D008664 2.6e-54 216.9 315 44.1
CAN.G500.15 Capsicum annuum HOM05D002428 ORTHO05D008664 4.5e-54 216.1 200 57.0
Peaxi162Scf00047g00729 Petunia axillaris HOM05D002428 ORTHO05D008664 4.5e-54 216.1 221 55.7
HPP92_025384 Vanilla planifolia HOM05D002428 ORTHO05D008664 4.5e-54 216.1 290 48.6
CsaV3_3G011080 Cucumis sativus L. HOM05D002428 ORTHO05D008664 7.6e-54 215.3 231 53.2
Eucgr.H00072 Eucalyptus grandis HOM05D002428 ORTHO05D008664 7.6e-54 215.3 214 53.7
Sabra01G0034800 Salix brachista HOM05D002428 ORTHO05D008664 7.6e-54 215.3 228 54.4
MELO3C006321.2 Cucumis melo HOM05D002428 ORTHO05D008664 1.0e-53 214.9 233 52.4
Actinidia35874 Actinidia chinensis HOM05D002428 ORTHO05D008664 1.7e-53 214.2 182 62.6
AL7G42860 Arabidopsis lyrata HOM05D002428 ORTHO05D008664 2.2e-53 213.8 190 56.8
Nn1g07803 Nelumbo nucifera HOM05D002428 ORTHO05D008664 3.8e-53 213.0 299 44.5
BcaB03g16059 Brassica carinata HOM05D002428 ORTHO05D008664 1.1e-52 211.5 221 54.8
arahy.Tifrunner.gnm1.ann1.HBBQ58 Arachis hypogaea HOM05D002428 ORTHO05D008664 1.4e-52 211.1 225 53.8
arahy.Tifrunner.gnm1.ann1.N1R11Y Arachis hypogaea HOM05D002428 ORTHO05D008664 4.2e-52 209.5 236 51.7
Ca_09779_v3 Cicer arietinum L. HOM05D002428 ORTHO05D008664 7.2e-52 208.8 226 53.5
Lj5g0020317 Lotus japonicus HOM05D002428 ORTHO05D008664 1.2e-51 208.0 202 55.9
C04p42250 Brassica napus HOM05D002428 ORTHO05D008664 2.7e-51 206.8 216 55.1
Migut.G00668 Erythranthe guttata HOM05D002428 ORTHO05D008664 2.7e-51 206.8 219 51.1
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.7e-51 206.8 282 45.7
Sp7g11440 Schrenkiella parvula HOM05D002428 ORTHO05D008664 2.7e-51 206.8 214 54.2
Aqoxy2G03893 Aquilegia oxysepala HOM05D002428 ORTHO05D008664 3.6e-51 206.5 222 53.2
BolC4t25803H Brassica oleracea HOM05D002428 ORTHO05D008664 3.6e-51 206.5 214 55.1
Haze_11594 Corylus avellana HOM05D002428 ORTHO05D008664 3.6e-51 206.5 189 59.8
Lsat_1_v5_gn_6_59880 Lactuca sativa HOM05D002428 ORTHO05D008664 4.6e-51 206.1 213 54.5
Lalb_Chr02g0150781 Lupinus albus HOM05D002428 ORTHO05D008664 4.6e-51 206.1 196 57.7
Medtr1g072690 Medicago truncatula HOM05D002428 ORTHO05D008664 4.6e-51 206.1 226 51.8
A04p08510 Brassica napus HOM05D002428 ORTHO05D008664 1.0e-50 204.9 190 59.5
BcaC02g09399 Brassica carinata HOM05D002428 ORTHO05D008664 1.3e-50 204.5 213 54.9
BraA04t16542Z Brassica rapa HOM05D002428 ORTHO05D008664 1.3e-50 204.5 201 57.2
Thhalv10025497m.g Eutrema salsugineum HOM05D002428 ORTHO05D008664 1.3e-50 204.5 186 57.0
Sed0003366 Sechium edule HOM05D002428 ORTHO05D008664 1.8e-50 204.1 231 52.8
EL10Ac9g21669 Beta vulgaris HOM05D002428 ORTHO05D008664 2.3e-50 203.8 233 48.9
TPR.G1546 Trifolium pratense HOM05D002428 ORTHO05D008664 3.0e-50 203.4 196 56.1
Glyma.20G198100 Glycine max HOM05D002428 ORTHO05D008664 1.9e-49 200.7 222 55.0
Glyma.10G192300 Glycine max HOM05D002428 ORTHO05D008664 2.5e-49 200.3 223 52.9
vmacro00485 Vaccinium macrocarpon HOM05D002428 ORTHO05D008664 3.3e-49 199.9 180 57.8
PSO063G5917 Papaver somniferum HOM05D002428 ORTHO05D008664 1.3e-48 198.0 239 49.4
DCAR_026600 Daucus carota HOM05D002428 ORTHO05D008664 2.2e-48 197.2 229 52.8
PSO017G5948 Papaver somniferum HOM05D002428 ORTHO05D008664 2.2e-48 197.2 218 53.2
Nitab4.5_0003750g0020 Nicotiana tabacum HOM05D002428 ORTHO05D008664 2.8e-48 196.8 221 51.1
ECA233G2351 Erigeron canadensis HOM05D002428 ORTHO05D008664 3.7e-48 196.4 185 57.3
HanXRQChr07g0185701 Helianthus annuus HOM05D002428 ORTHO05D008664 1.1e-47 194.9 183 56.8
Psat6g141320 Pisum sativum HOM05D002428 ORTHO05D008664 1.4e-47 194.5 222 51.8
Prupe.3G076100 Prunus persica HOM05D002428 ORTHO05D008664 2.4e-47 193.7 170 61.2
Ah.01g018930 Amaranthus hybridus HOM05D002428 ORTHO05D008664 5.3e-47 192.6 212 50.9
SGA_v2.0_scaffold72G24054 Striga asiatica HOM05D002428 ORTHO05D008664 1.5e-46 191.0 220 50.5
ClCG05G003410 Citrullus lanatus HOM05D002428 ORTHO05D008664 3.4e-46 189.9 251 46.6
Ah.01g006100 Amaranthus hybridus HOM05D002428 ORTHO05D008664 1.7e-45 187.6 214 51.4
AUR62010416 Chenopodium quinoa HOM05D002428 ORTHO05D008664 6.5e-45 185.7 205 48.8
Sc13g0000090 Simmondsia chinensis HOM05D002428 ORTHO05D008664 8.5e-45 185.3 188 55.9
Actinidia25626 Actinidia chinensis HOM05D002428 ORTHO05D008664 1.1e-44 184.9 215 52.6
CDE08G1693 Ceratophyllum demersum HOM05D002428 ORTHO05D008664 1.6e-43 181.0 187 52.9
Lj6A561G51 Lonicera japonica HOM05D002428 ORTHO05D008664 2.1e-43 180.6 254 44.1
CSS0022946 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 2.7e-43 180.3 302 42.4
SEGI_22388 Sequoiadendron giganteum HOM05D002428 ORTHO05D008664 3.6e-43 179.9 205 47.3
Phvul.010G104000 Phaseolus vulgaris HOM05D002428 ORTHO05D008664 3.7e-40 169.9 169 55.6
Atru.chr4.1737 Acer truncatum HOM05D002428 ORTHO05D008664 1.8e-39 167.5 166 55.4
AUR62016799 Chenopodium quinoa HOM05D002428 ORTHO05D008664 5.3e-39 166.0 180 50.6
SMO358G0076 Selaginella moellendorffii HOM05D002428 ORTHO05D008664 4.5e-38 162.9 233 40.3
Pp3c19_7640 Physcomitrium patens HOM05D002428 ORTHO05D008664 1.7e-37 161.0 210 44.3
CDE05G2575 Ceratophyllum demersum HOM05D002428 ORTHO05D008664 4.2e-36 156.4 185 49.7
Cfa014927 Carpinus fangiana HOM05D002428 ORTHO05D008664 3.6e-35 153.3 158 57.0
Mapoly0004s0042 Marchantia polymorpha HOM05D002428 ORTHO05D008664 1.8e-34 151.0 229 40.6
CBR_g30251 Chara braunii HOM05D002428 ORTHO05D008664 5.2e-34 149.4 221 41.2
AagrBONN_evm.TU.Sc2ySwM_344.4007 Anthoceros agrestis HOM05D002428 ORTHO05D008664 1.6e-30 137.9 229 40.6
AT4G13670 Arabidopsis thaliana HOM05D002428 ORTHO05D008664 2.7e-19 100.5 106 56.6
Oeu022362.1 Olea europaea HOM05D002428 ORTHO05D008664 7.0e-15 85.9 128 43.0
Prupe.1G083800 Prunus persica HOM05D002020 ORTHO05D002046 7.7e-14 82.4 49 79.6
AL7G42850 Arabidopsis lyrata HOM05D002428 ORTHO05D008664 1.9e-12 77.8 176 31.8
Hma1.2p1_1076F.1_g254570 Hydrangea macrophylla HOM05D002428 ORTHO05D008664 1.0e-10 72.0 70 61.4


User provided reference genes

Program Settings