Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb425780 Zea mays HOM05D003212 ORTHO05D003959 4.1e-96 354.8 183 100.0
Zm00001eb058560 Zea mays HOM05D003212 ORTHO05D003959 4.5e-34 148.7 78 98.7
Zm00001eb175910 Zea mays HOM05D003212 ORTHO05D003959 3.8e-33 145.6 78 96.2
Zm00001eb140940 Zea mays HOM05D003212 ORTHO05D003959 2.2e-09 66.6 63 61.9
Zm00001eb140930 Zea mays HOM05D003212 ORTHO05D003959 3.8e-09 65.9 45 71.1
Os01g0951200 Oryza sativa ssp. japonica HOM05D003212 ORTHO05D003959 5.0e-09 65.5 59 61.0
ATR0789G118 Amborella trichopoda HOM05D003212 ORTHO05D003959 4.2e-08 62.4 44 72.7
Os01g0951400 Oryza sativa ssp. japonica HOM05D003212 ORTHO05D003959 5.5e-08 62.0 59 59.3
PSO339G4798 Papaver somniferum HOM05D003212 ORTHO05D003959 5.5e-08 62.0 58 55.2
QL04p014524 Quercus lobata HOM05D003212 ORTHO05D003959 5.5e-08 62.0 44 70.5
QL04p014886 Quercus lobata HOM05D003212 ORTHO05D003959 5.5e-08 62.0 44 70.5
arahy.Tifrunner.gnm1.ann1.HRMJ8R Arachis hypogaea HOM05D003212 ORTHO05D003959 7.2e-08 61.6 46 65.2
MSTRG.20521 Avicennia marina HOM05D003212 ORTHO05D003959 7.2e-08 61.6 59 54.2
AUR62026849 Chenopodium quinoa HOM05D003212 ORTHO05D003959 7.2e-08 61.6 58 55.2
AUR62037200 Chenopodium quinoa HOM05D003212 ORTHO05D003959 7.2e-08 61.6 58 55.2
Migut.B01220 Erythranthe guttata HOM05D003212 ORTHO05D003959 7.2e-08 61.6 59 54.2
PSO384G1532 Papaver somniferum HOM05D003212 ORTHO05D003959 9.4e-08 61.2 56 62.5
SGA_v2.0_scaffold124G33627 Striga asiatica HOM05D003212 ORTHO05D003959 9.4e-08 61.2 59 54.2
Ciclev10001014m.g Citrus clementina HOM05D003212 ORTHO05D003959 1.2e-07 60.8 44 68.2
Glyma.13G198700 Glycine max HOM05D003212 ORTHO05D003959 1.2e-07 60.8 46 67.4
Lj3g0002083 Lotus japonicus HOM05D003212 ORTHO05D003959 1.2e-07 60.8 46 67.4
Oeu002655.1 Olea europaea HOM05D003212 ORTHO05D003959 1.2e-07 60.8 45 64.4
Oeu003925.2 Olea europaea HOM05D003212 ORTHO05D003959 1.2e-07 60.8 59 54.2
Peaxi162Scf01010g00217 Petunia axillaris HOM05D003212 ORTHO05D003959 1.2e-07 60.8 45 64.4
Phvul.011G207800 Phaseolus vulgaris HOM05D003212 ORTHO05D003959 1.2e-07 60.8 46 67.4
Sopen11g027550 Solanum pennellii HOM05D003212 ORTHO05D003959 1.2e-07 60.8 59 52.5
SGA_v2.0_scaffold232G43508 Striga asiatica HOM05D003212 ORTHO05D003959 1.2e-07 60.8 59 55.9
THA.LOC104824191 Tarenaya hassleriana HOM05D003212 ORTHO05D003959 1.2e-07 60.8 45 66.7
TWI38G0920 Tripterygium wilfordii HOM05D003212 ORTHO05D003959 1.2e-07 60.8 45 66.7
HPP92_003228 Vanilla planifolia HOM05D003212 ORTHO05D003959 1.2e-07 60.8 45 64.4
HPP92_003235 Vanilla planifolia HOM05D003212 ORTHO05D003959 1.2e-07 60.8 45 64.4
Actinidia21523 Actinidia chinensis HOM05D003212 ORTHO05D003959 1.6e-07 60.5 59 59.3
MSTRG.16992 Avicennia marina HOM05D003212 ORTHO05D003959 1.6e-07 60.5 59 52.5
CAN.G745.39 Capsicum annuum HOM05D003212 ORTHO05D003959 1.6e-07 60.5 59 52.5
Migut.N01834 Erythranthe guttata HOM05D003212 ORTHO05D003959 1.6e-07 60.5 45 66.7
Hma1.2p1_0384F.1_g141010 Hydrangea macrophylla HOM05D003212 ORTHO05D003959 1.6e-07 60.5 45 66.7
Nitab4.5_0000893g0050 Nicotiana tabacum HOM05D003212 ORTHO05D003959 1.6e-07 60.5 59 52.5
Nitab4.5_0001135g0170 Nicotiana tabacum HOM05D003212 ORTHO05D003959 1.6e-07 60.5 59 52.5
Phvul.005G029300 Phaseolus vulgaris HOM05D003212 ORTHO05D003959 1.6e-07 60.5 44 65.9
Solyc11g068830.2 Solanum lycopersicum HOM05D003212 ORTHO05D003959 1.6e-07 60.5 59 52.5
VMungo1080G0024 Vigna mungo HOM05D003212 ORTHO05D003959 1.6e-07 60.5 46 63.0
Ca_18881_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 2.1e-07 60.1 46 65.2
Ca_23514_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 2.1e-07 60.1 46 65.2
FvH4_7g02810 Fragaria vesca HOM05D003212 ORTHO05D003959 2.1e-07 60.1 44 68.2
FAN01G2682 Fragaria x ananassa HOM05D003212 ORTHO05D003959 2.1e-07 60.1 44 68.2
FAN03G0414 Fragaria x ananassa HOM05D003212 ORTHO05D003959 2.1e-07 60.1 44 68.2
FAN06G3951 Fragaria x ananassa HOM05D003212 ORTHO05D003959 2.1e-07 60.1 44 68.2
FAN10G3499 Fragaria x ananassa HOM05D003212 ORTHO05D003959 2.1e-07 60.1 44 68.2
Glyma.11G154200 Glycine max HOM05D003212 ORTHO05D003959 2.1e-07 60.1 46 65.2
Psat0s1718g0040 Pisum sativum HOM05D003212 ORTHO05D003959 2.1e-07 60.1 46 67.4
Potri.001G026300 Populus trichocarpa HOM05D003212 ORTHO05D003959 2.1e-07 60.1 44 68.2
RcHm_v2.0_Chr1g0323241 Rosa chinensis HOM05D003212 ORTHO05D003959 2.1e-07 60.1 44 68.2
Sabra01G0019400 Salix brachista HOM05D003212 ORTHO05D003959 2.1e-07 60.1 44 68.2
TAR369G1042 Trochodendron aralioides HOM05D003212 ORTHO05D003959 2.1e-07 60.1 45 64.4
unitig_26.g9606 Utricularia gibba HOM05D003212 ORTHO05D003959 2.1e-07 60.1 45 64.4
arahy.Tifrunner.gnm1.ann1.J24RTT Arachis hypogaea HOM05D003212 ORTHO05D003959 2.7e-07 59.7 46 65.2
EL10Ac2g02822 Beta vulgaris HOM05D003212 ORTHO05D003959 2.7e-07 59.7 45 66.7
CANSAT80G2392 Cannabis sativa HOM05D003212 ORTHO05D003959 2.7e-07 59.7 44 68.2
ClCG01G007740 Citrullus lanatus HOM05D003212 ORTHO05D003959 2.7e-07 59.7 44 68.2
MELO3C005122.2 Cucumis melo HOM05D003212 ORTHO05D003959 2.7e-07 59.7 44 68.2
CsaV3_5G024820 Cucumis sativus L. HOM05D003212 ORTHO05D003959 2.7e-07 59.7 44 68.2
Dinv32034 Davidia involucrata HOM05D003212 ORTHO05D003959 2.7e-07 59.7 59 54.2
Manes.11G004200 Manihot esculenta HOM05D003212 ORTHO05D003959 2.7e-07 59.7 44 65.9
Prupe.2G032600 Prunus persica HOM05D003212 ORTHO05D003959 2.7e-07 59.7 44 68.2
Sed0013182 Sechium edule HOM05D003212 ORTHO05D003959 2.7e-07 59.7 44 68.2
VMungo1127G0513 Vigna mungo HOM05D003212 ORTHO05D003959 2.7e-07 59.7 46 65.2
Aa31LG1G5360 Aethionema arabicum HOM05D003212 ORTHO05D003959 3.6e-07 59.3 45 64.4
Ah.12g062950 Amaranthus hybridus HOM05D003212 ORTHO05D003959 3.6e-07 59.3 45 66.7
AL5G35520 Arabidopsis lyrata HOM05D003212 ORTHO05D003959 3.6e-07 59.3 45 64.4
AT3G54470 Arabidopsis thaliana HOM05D003212 ORTHO05D003959 3.6e-07 59.3 45 64.4
arahy.Tifrunner.gnm1.ann1.HVGJ4H Arachis hypogaea HOM05D003212 ORTHO05D003959 3.6e-07 59.3 46 65.2
CDE08G1532 Ceratophyllum demersum HOM05D003212 ORTHO05D003959 3.6e-07 59.3 46 63.0
CDE09G0923 Ceratophyllum demersum HOM05D003212 ORTHO05D003959 3.6e-07 59.3 46 63.0
Lj7A581T52 Lonicera japonica HOM05D003212 ORTHO05D003959 3.6e-07 59.3 45 64.4
Lalb_Chr03g0032831 Lupinus albus HOM05D003212 ORTHO05D003959 3.6e-07 59.3 46 67.4
MD09G1262400 Malus domestica HOM05D003212 ORTHO05D003959 3.6e-07 59.3 44 68.2
Medtr1g025060 Medicago truncatula HOM05D003212 ORTHO05D003959 3.6e-07 59.3 46 65.2
Medtr3g017580 Medicago truncatula HOM05D003212 ORTHO05D003959 3.6e-07 59.3 46 65.2
SalBow5G4847 Salvia bowleyana HOM05D003212 ORTHO05D003959 3.6e-07 59.3 59 52.5
Sp5g07950 Schrenkiella parvula HOM05D003212 ORTHO05D003959 3.6e-07 59.3 45 64.4
Sed0011268 Sechium edule HOM05D003212 ORTHO05D003959 3.6e-07 59.3 44 68.2
Hund15723 Selenicereus undatus HOM05D003212 ORTHO05D003959 3.6e-07 59.3 45 64.4
PGSC0003DMG400019620 Solanum tuberosum HOM05D003212 ORTHO05D003959 3.6e-07 59.3 59 52.5
vmacro12692 Vaccinium macrocarpon HOM05D003212 ORTHO05D003959 3.6e-07 59.3 59 57.6
arahy.Tifrunner.gnm1.ann1.28N5NC Arachis hypogaea HOM05D003212 ORTHO05D003959 4.6e-07 58.9 46 63.0
Haze_03071 Corylus avellana HOM05D003212 ORTHO05D003959 4.6e-07 58.9 45 66.7
Lj3g0024329 Lotus japonicus HOM05D003212 ORTHO05D003959 4.6e-07 58.9 46 65.2
Medtr8g038390 Medicago truncatula HOM05D003212 ORTHO05D003959 4.6e-07 58.9 46 67.4
Psat5g219440 Pisum sativum HOM05D003212 ORTHO05D003959 4.6e-07 58.9 46 65.2
TPR.G17794 Trifolium pratense HOM05D003212 ORTHO05D003959 4.6e-07 58.9 46 65.2
CSS0010475 Camellia sinensis var. sinensis HOM05D003212 ORTHO05D003959 6.1e-07 58.5 57 54.4
CSS0011806 Camellia sinensis var. sinensis HOM05D003212 ORTHO05D003959 6.1e-07 58.5 57 54.4
AUR62003805 Chenopodium quinoa HOM05D003212 ORTHO05D003959 6.1e-07 58.5 45 66.7
Lsat_1_v5_gn_5_157360 Lactuca sativa HOM05D003212 ORTHO05D003959 6.1e-07 58.5 59 50.8
Nn7g36634 Nelumbo nucifera HOM05D003212 ORTHO05D003959 6.1e-07 58.5 45 62.2
PGR031G0586 Punica granatum HOM05D003212 ORTHO05D003959 6.1e-07 58.5 44 65.9
Sc11g0006540 Simmondsia chinensis HOM05D003212 ORTHO05D003959 6.1e-07 58.5 45 66.7
TPR.G36892 Trifolium pratense HOM05D003212 ORTHO05D003959 6.1e-07 58.5 46 65.2
Atru.chr12.1386 Acer truncatum HOM05D003212 ORTHO05D003959 7.9e-07 58.2 44 63.6
BcaC02g09067 Brassica carinata HOM05D003212 ORTHO05D003959 7.9e-07 58.2 44 68.2
A04p05360 Brassica napus HOM05D003212 ORTHO05D003959 7.9e-07 58.2 44 68.2
A07p22130 Brassica napus HOM05D003212 ORTHO05D003959 7.9e-07 58.2 44 65.9
C04p38050 Brassica napus HOM05D003212 ORTHO05D003959 7.9e-07 58.2 44 68.2
BolC4t25379H Brassica oleracea HOM05D003212 ORTHO05D003959 7.9e-07 58.2 44 68.2
BraA04t16236Z Brassica rapa HOM05D003212 ORTHO05D003959 7.9e-07 58.2 44 68.2
BraA07t29896Z Brassica rapa HOM05D003212 ORTHO05D003959 7.9e-07 58.2 58 51.7
AUR62001997 Chenopodium quinoa HOM05D003212 ORTHO05D003959 7.9e-07 58.2 45 64.4
Cc02_g26670 Coffea canephora HOM05D003212 ORTHO05D003959 7.9e-07 58.2 59 52.5
Lalb_Chr14g0366121 Lupinus albus HOM05D003212 ORTHO05D003959 7.9e-07 58.2 46 63.0
CiPaw.14G006800 Carya illinoinensis HOM05D003212 ORTHO05D003959 1.0e-06 57.8 44 65.9
Ca_10473_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 1.0e-06 57.8 46 63.0
COL.COLO4_09453 Corchorus olitorius HOM05D003212 ORTHO05D003959 1.0e-06 57.8 45 64.4
Thhalv10010334m.g Eutrema salsugineum HOM05D003212 ORTHO05D003959 1.0e-06 57.8 45 62.2
HanXRQChr01g0008251 Helianthus annuus HOM05D003212 ORTHO05D003959 1.0e-06 57.8 45 60.0
Potri.003G198501 Populus trichocarpa HOM05D003212 ORTHO05D003959 1.0e-06 57.8 44 63.6
Potri.T125906 Populus trichocarpa HOM05D003212 ORTHO05D003959 1.0e-06 57.8 44 63.6
Sabra03G0147800 Salix brachista HOM05D003212 ORTHO05D003959 1.0e-06 57.8 44 63.6
BcaB02g07736 Brassica carinata HOM05D003212 ORTHO05D003959 1.4e-06 57.4 44 68.2
BcaB02g08443 Brassica carinata HOM05D003212 ORTHO05D003959 1.4e-06 57.4 44 65.9
Carub.0005s2109 Capsella rubella HOM05D003212 ORTHO05D003959 1.4e-06 57.4 45 62.2
ECA232G0145 Erigeron canadensis HOM05D003212 ORTHO05D003959 1.4e-06 57.4 58 50.0
ECA248G3712 Erigeron canadensis HOM05D003212 ORTHO05D003959 1.4e-06 57.4 58 50.0
HanXRQChr13g0406671 Helianthus annuus HOM05D003212 ORTHO05D003959 1.4e-06 57.4 45 62.2
Oeu056551.1 Olea europaea HOM05D003212 ORTHO05D003959 1.4e-06 57.4 59 50.8
BcaC08g44683 Brassica carinata HOM05D003212 ORTHO05D003959 1.8e-06 57.0 44 65.9
C06p22180 Brassica napus HOM05D003212 ORTHO05D003959 1.8e-06 57.0 44 65.9
BolC6t37404H Brassica oleracea HOM05D003212 ORTHO05D003959 1.8e-06 57.0 44 65.9
CARHR164370 Cardamine hirsuta HOM05D003212 ORTHO05D003959 1.8e-06 57.0 44 65.9
Gohir.A13G144600 Gossypium hirsutum HOM05D003212 ORTHO05D003959 1.8e-06 57.0 44 63.6
Gohir.D13G149300 Gossypium hirsutum HOM05D003212 ORTHO05D003959 1.8e-06 57.0 44 63.6
Gorai.013G167000 Gossypium raimondii HOM05D003212 ORTHO05D003959 1.8e-06 57.0 44 63.6
Rhsim01G0123800 Rhododendron simsii HOM05D003212 ORTHO05D003959 1.8e-06 57.0 59 47.5
Hund13345 Selenicereus undatus HOM05D003212 ORTHO05D003959 1.8e-06 57.0 44 65.9
Atru.chr12.1389 Acer truncatum HOM05D003212 ORTHO05D003959 2.3e-06 56.6 44 65.9
DCAR_006596 Daucus carota HOM05D003212 ORTHO05D003959 3.0e-06 56.2 44 61.4
Aqoxy2G00340 Aquilegia oxysepala HOM05D003212 ORTHO05D003959 3.9e-06 55.8 44 59.1
Gohir.A04G028000 Gossypium hirsutum HOM05D003212 ORTHO05D003959 3.9e-06 55.8 44 63.6
Ca_28375_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 5.1e-06 55.5 43 60.5
Ca_30130_v3 Cicer arietinum L. HOM05D003212 ORTHO05D003959 5.1e-06 55.5 43 60.5
Gohir.D05G360100 Gossypium hirsutum HOM05D003212 ORTHO05D003959 5.1e-06 55.5 44 61.4
Gorai.009G432600 Gossypium raimondii HOM05D003212 ORTHO05D003959 5.1e-06 55.5 44 61.4
Duzib268G1229 Durio zibethinus HOM05D003212 ORTHO05D003959 6.7e-06 55.1 44 59.1
Thecc.07G075400 Theobroma cacao HOM05D003212 ORTHO05D003959 6.7e-06 55.1 44 61.4
Duzib213G0398 Durio zibethinus HOM05D003212 ORTHO05D003959 8.8e-06 54.7 44 59.1


User provided reference genes

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