Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb425650 Zea mays HOM05D001166 ORTHO05D000992 3.2e-77 292.0 180 100.0
Zm00001eb078600 Zea mays HOM05D001166 ORTHO05D000992 5.5e-29 131.7 124 62.9
Os05g0305700 Oryza sativa ssp. japonica HOM05D001166 ORTHO05D000992 4.9e-17 92.0 119 47.1
TAR365G0651 Trochodendron aralioides HOM05D001166 ORTHO05D000992 3.2e-16 89.4 122 45.9
Ca_01243_v3 Cicer arietinum L. HOM05D001166 ORTHO05D000992 4.1e-16 89.0 121 46.3
Manes.04G047900 Manihot esculenta HOM05D001166 ORTHO05D000992 1.2e-15 87.4 120 44.2
PGR142G2872 Punica granatum HOM05D001166 ORTHO05D000992 1.2e-15 87.4 121 45.5
Psat5g290680 Pisum sativum HOM05D001166 ORTHO05D000992 1.6e-15 87.0 119 44.5
GSVIVG01004098001 Vitis vinifera HOM05D001166 ORTHO05D000992 1.6e-15 87.0 125 46.4
MBI07_g05953_MAGBIO Magnolia biondii HOM05D001166 ORTHO05D000992 3.5e-15 85.9 126 46.0
ClCG07G011690 Citrullus lanatus HOM05D001166 ORTHO05D000992 1.0e-14 84.3 115 44.3
MELO3C017793.2 Cucumis melo HOM05D001166 ORTHO05D000992 1.0e-14 84.3 122 42.6
CsaV3_4G002520 Cucumis sativus L. HOM05D001166 ORTHO05D000992 1.0e-14 84.3 122 42.6
arahy.Tifrunner.gnm1.ann1.WF9MFL Arachis hypogaea HOM05D001166 ORTHO05D000992 1.7e-14 83.6 119 44.5
arahy.Tifrunner.gnm1.ann1.X8XU5X Arachis hypogaea HOM05D001166 ORTHO05D000992 1.7e-14 83.6 119 44.5
Sed0000827 Sechium edule HOM05D001166 ORTHO05D000992 1.7e-14 83.6 123 43.1
Sed0024255 Sechium edule HOM05D001166 ORTHO05D000992 3.0e-14 82.8 122 43.4
Nn1g09565 Nelumbo nucifera HOM05D001166 ORTHO05D000992 3.9e-14 82.4 122 45.1
PSO837G0040 Papaver somniferum HOM05D001166 ORTHO05D000992 3.9e-14 82.4 121 44.6
Thecc.04G172400 Theobroma cacao HOM05D001166 ORTHO05D000992 3.9e-14 82.4 119 42.0
TPR.G18625 Trifolium pratense HOM05D001166 ORTHO05D000992 5.0e-14 82.0 114 44.7
PSO017G3126 Papaver somniferum HOM05D001166 ORTHO05D000992 6.6e-14 81.6 121 43.8
QL10p051694 Quercus lobata HOM05D001166 ORTHO05D000992 8.6e-14 81.3 132 43.2
FvH4_6g25710 Fragaria vesca HOM05D001166 ORTHO05D000992 1.1e-13 80.9 126 42.9
Aqoxy5G00009 Aquilegia oxysepala HOM05D001166 ORTHO05D000992 1.5e-13 80.5 122 44.3
Lalb_Chr14g0372581 Lupinus albus HOM05D001166 ORTHO05D000992 1.5e-13 80.5 120 45.0
Lalb_Chr24g0396711 Lupinus albus HOM05D001166 ORTHO05D000992 1.5e-13 80.5 123 42.3
RcHm_v2.0_Chr2g0125981 Rosa chinensis HOM05D001166 ORTHO05D000992 3.3e-13 79.3 126 42.1
Phvul.005G154800 Phaseolus vulgaris HOM05D001166 ORTHO05D000992 4.3e-13 79.0 121 43.0
VMungo1080G0792 Vigna mungo HOM05D001166 ORTHO05D000992 4.3e-13 79.0 121 43.0
Glyma.13G346000 Glycine max HOM05D001166 ORTHO05D000992 5.6e-13 78.6 119 42.9
Gohir.A10G141000 Gossypium hirsutum HOM05D001166 ORTHO05D000992 5.6e-13 78.6 124 41.1
Nn7g37565 Nelumbo nucifera HOM05D001166 ORTHO05D000992 5.6e-13 78.6 122 43.4
A03p35340 Brassica napus HOM05D001166 ORTHO05D000992 7.3e-13 78.2 113 43.4
CDE08G0435 Ceratophyllum demersum HOM05D001166 ORTHO05D000992 7.3e-13 78.2 126 42.1
Duzib151G0299 Durio zibethinus HOM05D001166 ORTHO05D000992 9.5e-13 77.8 130 39.2
FAN05G4094 Fragaria x ananassa HOM05D001166 ORTHO05D000992 9.5e-13 77.8 126 42.1
FAN09G4338 Fragaria x ananassa HOM05D001166 ORTHO05D000992 9.5e-13 77.8 126 42.1
A05p40640 Brassica napus HOM05D001166 ORTHO05D000992 1.2e-12 77.4 118 42.4
C05p59750 Brassica napus HOM05D001166 ORTHO05D000992 1.2e-12 77.4 118 42.4
BraA05t22795Z Brassica rapa HOM05D001166 ORTHO05D000992 1.2e-12 77.4 118 42.4
CANSAT78G1110 Cannabis sativa HOM05D001166 ORTHO05D000992 1.2e-12 77.4 119 44.5
COL.COLO4_06572 Corchorus olitorius HOM05D001166 ORTHO05D000992 1.6e-12 77.0 114 43.0
Ciclev10016354m.g Citrus clementina HOM05D001166 ORTHO05D000992 2.1e-12 76.6 121 42.1
Dinv44161 Davidia involucrata HOM05D001166 ORTHO05D000992 2.1e-12 76.6 122 42.6
Glyma.15G028300 Glycine max HOM05D001166 ORTHO05D000992 2.1e-12 76.6 119 42.0
CARHR082250 Cardamine hirsuta HOM05D001166 ORTHO05D000992 3.6e-12 75.9 118 41.5
Aa31LG5G18110 Aethionema arabicum HOM05D001166 ORTHO05D000992 4.7e-12 75.5 114 43.0
BraA01t04375Z Brassica rapa HOM05D001166 ORTHO05D000992 4.7e-12 75.5 118 41.5
Duzib133G0967 Durio zibethinus HOM05D001166 ORTHO05D000992 4.7e-12 75.5 115 42.6
Gorai.011G138900 Gossypium raimondii HOM05D001166 ORTHO05D000992 4.7e-12 75.5 124 40.3
AT3G07565 Arabidopsis thaliana HOM05D001166 ORTHO05D000992 6.2e-12 75.1 114 42.1
BcaC01g04276 Brassica carinata HOM05D001166 ORTHO05D000992 1.1e-11 74.3 113 42.5
C03p42950 Brassica napus HOM05D001166 ORTHO05D000992 1.1e-11 74.3 113 42.5
BcaC05g29551 Brassica carinata HOM05D001166 ORTHO05D000992 1.4e-11 73.9 119 42.0
BraA03t12712Z Brassica rapa HOM05D001166 ORTHO05D000992 1.4e-11 73.9 124 39.5
Haze_01435 Corylus avellana HOM05D001166 ORTHO05D000992 1.8e-11 73.6 119 43.7
Haze_01438 Corylus avellana HOM05D001166 ORTHO05D000992 1.8e-11 73.6 119 43.7
Gohir.D10G125900 Gossypium hirsutum HOM05D001166 ORTHO05D000992 1.8e-11 73.6 124 39.5
Oeu064701.1 Olea europaea HOM05D001166 ORTHO05D000992 1.8e-11 73.6 120 41.7
Manes.13G057700 Manihot esculenta HOM05D001166 ORTHO05D000992 2.3e-11 73.2 115 43.5
Potri.017G023300 Populus trichocarpa HOM05D001166 ORTHO05D000992 2.3e-11 73.2 123 38.2
Sp3g06490 Schrenkiella parvula HOM05D001166 ORTHO05D000992 2.3e-11 73.2 127 39.4
Cfa015205 Carpinus fangiana HOM05D001166 ORTHO05D000992 4.0e-11 72.4 116 43.1
Cc01_g15780 Coffea canephora HOM05D001166 ORTHO05D000992 4.0e-11 72.4 118 41.5
Lalb_Chr22g0352041 Lupinus albus HOM05D001166 ORTHO05D000992 4.0e-11 72.4 120 41.7
SalBow6G3218 Salvia bowleyana HOM05D001166 ORTHO05D000992 4.0e-11 72.4 118 42.4
Thecc.01G204900 Theobroma cacao HOM05D001166 ORTHO05D000992 4.0e-11 72.4 122 41.0
AL3G18910 Arabidopsis lyrata HOM05D001166 ORTHO05D000992 5.2e-11 72.0 123 39.0
CiPaw.01G095200 Carya illinoinensis HOM05D001166 ORTHO05D000992 5.2e-11 72.0 120 42.5
Gohir.A07G162100 Gossypium hirsutum HOM05D001166 ORTHO05D000992 5.2e-11 72.0 119 41.2
Gohir.D07G168600 Gossypium hirsutum HOM05D001166 ORTHO05D000992 5.2e-11 72.0 119 41.2
Gorai.N001000 Gossypium raimondii HOM05D001166 ORTHO05D000992 5.2e-11 72.0 119 41.2
MD04G1046300 Malus domestica HOM05D001166 ORTHO05D000992 5.2e-11 72.0 99 44.4
BcaB04g21286 Brassica carinata HOM05D001166 ORTHO05D000992 6.8e-11 71.6 119 41.2
Cpa.g.sc8.21 Carica papaya HOM05D001166 ORTHO05D000992 6.8e-11 71.6 117 41.0
Duzib212G0869 Durio zibethinus HOM05D001166 ORTHO05D000992 6.8e-11 71.6 99 43.4
Thhalv10021333m.g Eutrema salsugineum HOM05D001166 ORTHO05D000992 6.8e-11 71.6 127 38.6
Nitab4.5_0001348g0190 Nicotiana tabacum HOM05D001166 ORTHO05D000992 6.8e-11 71.6 119 41.2
EL10Ac3g06023 Beta vulgaris HOM05D001166 ORTHO05D000992 8.9e-11 71.2 99 44.4
Rhsim13G0055700 Rhododendron simsii HOM05D001166 ORTHO05D000992 8.9e-11 71.2 117 41.0
Lj3g0019971 Lotus japonicus HOM05D001166 ORTHO05D000992 1.2e-10 70.9 113 41.6
BolC5t34629H Brassica oleracea HOM05D001166 ORTHO05D000992 1.5e-10 70.5 68 51.5
Peaxi162Scf00390g00017 Petunia axillaris HOM05D001166 ORTHO05D000992 1.5e-10 70.5 117 41.9
BcaB03g14693 Brassica carinata HOM05D001166 ORTHO05D000992 2.6e-10 69.7 113 40.7
Cc03_g12340 Coffea canephora HOM05D001166 ORTHO05D000992 2.6e-10 69.7 82 47.6
Nitab4.5_0004982g0050 Nicotiana tabacum HOM05D001166 ORTHO05D000992 2.6e-10 69.7 117 41.0
Potri.007G132700 Populus trichocarpa HOM05D001166 ORTHO05D000992 2.6e-10 69.7 117 38.5
TAR362G1296 Trochodendron aralioides HOM05D001166 ORTHO05D000992 2.6e-10 69.7 114 42.1
Duzib138G0233 Durio zibethinus HOM05D001166 ORTHO05D000992 3.4e-10 69.3 113 40.7
THA.LOC104802640 Tarenaya hassleriana HOM05D001166 ORTHO05D000992 3.4e-10 69.3 114 43.0
THA.LOC104819022 Tarenaya hassleriana HOM05D001166 ORTHO05D000992 3.4e-10 69.3 118 40.7
Thhalv10002175m.g Eutrema salsugineum HOM05D001166 ORTHO05D000992 4.4e-10 68.9 115 40.9
Gohir.A08G048500 Gossypium hirsutum HOM05D001166 ORTHO05D000992 4.4e-10 68.9 96 42.7
CSS0014252 Camellia sinensis var. sinensis HOM05D001166 ORTHO05D000992 5.8e-10 68.6 123 39.8
Eucgr.G02017 Eucalyptus grandis HOM05D001166 ORTHO05D000992 5.8e-10 68.6 121 38.8
Gohir.D08G058600 Gossypium hirsutum HOM05D001166 ORTHO05D000992 5.8e-10 68.6 96 42.7
Duzib211G0070 Durio zibethinus HOM05D001166 ORTHO05D000992 7.5e-10 68.2 122 38.5
Gorai.004G060500 Gossypium raimondii HOM05D001166 ORTHO05D000992 7.5e-10 68.2 100 42.0
vmacro02846 Vaccinium macrocarpon HOM05D001166 ORTHO05D000992 7.5e-10 68.2 117 40.2
VMungo0647G0052 Vigna mungo HOM05D001166 ORTHO05D000992 7.5e-10 68.2 65 55.4
Atru.chr4.1288 Acer truncatum HOM05D001166 ORTHO05D000992 1.3e-09 67.4 118 38.1
ATR0743G028 Amborella trichopoda HOM05D001166 ORTHO05D000992 1.3e-09 67.4 117 41.9
BolC3t16563H Brassica oleracea HOM05D001166 ORTHO05D000992 1.3e-09 67.4 63 52.4
Migut.N00689 Erythranthe guttata HOM05D001166 ORTHO05D000992 1.3e-09 67.4 115 41.7
Potri.014G197300 Populus trichocarpa HOM05D001166 ORTHO05D000992 1.3e-09 67.4 96 43.8
TWI18G0984 Tripterygium wilfordii HOM05D001166 ORTHO05D000992 1.3e-09 67.4 113 40.7
HPP92_004520 Vanilla planifolia HOM05D001166 ORTHO05D000992 1.3e-09 67.4 126 34.9
HPP92_004530 Vanilla planifolia HOM05D001166 ORTHO05D000992 1.3e-09 67.4 126 34.9
FAN02G2558 Fragaria x ananassa HOM05D001166 ORTHO05D000992 1.7e-09 67.0 69 50.7
Lsat_1_v5_gn_9_15841 Lactuca sativa HOM05D001166 ORTHO05D000992 1.7e-09 67.0 117 40.2
Medtr2g099155 Medicago truncatula HOM05D001166 ORTHO05D000992 1.7e-09 67.0 105 41.0
Sabra07G0107700 Salix brachista HOM05D001166 ORTHO05D000992 1.7e-09 67.0 96 40.6
Sabra07G0119500 Salix brachista HOM05D001166 ORTHO05D000992 1.7e-09 67.0 96 40.6
Hund12399 Selenicereus undatus HOM05D001166 ORTHO05D000992 2.2e-09 66.6 116 37.9
Thhalv10003378m.g Eutrema salsugineum HOM05D001166 ORTHO05D000992 2.9e-09 66.2 118 39.0
Thhalv10029444m.g Eutrema salsugineum HOM05D001166 ORTHO05D000992 2.9e-09 66.2 114 39.5
THA.LOC104822454 Tarenaya hassleriana HOM05D001166 ORTHO05D000992 2.9e-09 66.2 113 41.6
Carub.0003s0712 Capsella rubella HOM05D001166 ORTHO05D000992 3.7e-09 65.9 119 39.5
TWI36G0272 Tripterygium wilfordii HOM05D001166 ORTHO05D000992 3.7e-09 65.9 113 39.8
TWI36G0628 Tripterygium wilfordii HOM05D001166 ORTHO05D000992 3.7e-09 65.9 113 39.8
GSVIVG01001903001 Vitis vinifera HOM05D001166 ORTHO05D000992 3.7e-09 65.9 89 46.1
Ciclev10021850m.g Citrus clementina HOM05D001166 ORTHO05D000992 4.9e-09 65.5 122 39.3
CSS0018593 Camellia sinensis var. sinensis HOM05D001166 ORTHO05D000992 1.1e-08 64.3 94 44.7
Actinidia11653 Actinidia chinensis HOM05D001166 ORTHO05D000992 1.9e-08 63.5 112 39.3
SGA_v2.0_scaffold95G28681 Striga asiatica HOM05D001166 ORTHO05D000992 1.9e-08 63.5 120 36.7
Actinidia23133 Actinidia chinensis HOM05D001166 ORTHO05D000992 2.4e-08 63.2 117 39.3
Gorai.006G229900 Gossypium raimondii HOM05D001166 ORTHO05D000992 2.4e-08 63.2 94 40.4
Nitab4.5_0007648g0010 Nicotiana tabacum HOM05D001166 ORTHO05D000992 2.4e-08 63.2 96 43.8
DCAR_012711 Daucus carota HOM05D001091 ORTHO05D001020 3.2e-08 62.8 119 37.0
MD13G1256700 Malus domestica HOM05D001166 ORTHO05D000992 4.1e-08 62.4 106 40.6
CiPaw.01G095300 Carya illinoinensis HOM05D001166 ORTHO05D000992 5.4e-08 62.0 122 41.0
Hma1.2p1_0161F.1_g071800 Hydrangea macrophylla HOM05D001166 ORTHO05D000992 5.4e-08 62.0 96 42.7
Solyc09g020000.3 Solanum lycopersicum HOM05D001166 ORTHO05D000992 7.0e-08 61.6 96 42.7
Sopen09g012830 Solanum pennellii HOM05D001166 ORTHO05D000992 7.0e-08 61.6 96 42.7
GSVIVG01004109001 Vitis vinifera HOM05D001166 ORTHO05D000992 7.0e-08 61.6 120 37.5
Dinv28778 Davidia involucrata HOM05D001166 ORTHO05D000992 9.2e-08 61.2 119 39.5
Migut.D00760 Erythranthe guttata HOM05D001166 ORTHO05D000992 9.2e-08 61.2 119 37.8
Thhalv10015643m.g Eutrema salsugineum HOM05D001166 ORTHO05D000992 9.2e-08 61.2 127 36.2
SGA_v2.0_scaffold77G25325 Striga asiatica HOM05D001166 ORTHO05D000992 9.2e-08 61.2 81 44.4
HanXRQChr13g0419521 Helianthus annuus HOM05D001166 ORTHO05D000992 1.2e-07 60.8 70 50.0
SEGI_01091 Sequoiadendron giganteum HOM05D001166 ORTHO05D000992 1.6e-07 60.5 47 63.8
Actinidia23811 Actinidia chinensis HOM05D001166 ORTHO05D000992 2.0e-07 60.1 94 43.6
Gohir.A09G212500 Gossypium hirsutum HOM05D001166 ORTHO05D000992 2.7e-07 59.7 116 33.6
Lj1A106T20 Lonicera japonica HOM05D001166 ORTHO05D000992 2.7e-07 59.7 96 39.6
Actinidia34521 Actinidia chinensis HOM05D001166 ORTHO05D000992 4.6e-07 58.9 55 54.5
AUR62002359 Chenopodium quinoa HOM05D001166 ORTHO05D000992 7.8e-07 58.2 100 42.0
HanXRQChr08g0231271 Helianthus annuus HOM05D001166 ORTHO05D000992 7.8e-07 58.2 118 37.3
Oeu058213.1 Olea europaea HOM05D001166 ORTHO05D000992 7.8e-07 58.2 156 33.3
Thecc.04G172700 Theobroma cacao HOM05D001166 ORTHO05D000992 7.8e-07 58.2 93 40.9
Hma1.2p1_0324F.1_g125690 Hydrangea macrophylla HOM05D001166 ORTHO05D000992 1.0e-06 57.8 97 42.3
Glyma.11G125700 Glycine max HOM05D001166 ORTHO05D000992 1.3e-06 57.4 92 40.2
Glyma.12G050300 Glycine max HOM05D001166 ORTHO05D000992 2.3e-06 56.6 92 42.4
Gohir.D09G206000 Gossypium hirsutum HOM05D001166 ORTHO05D000992 2.3e-06 56.6 94 38.3
Hma1.2p1_1756F.1_g301030 Hydrangea macrophylla HOM05D001166 ORTHO05D000992 3.0e-06 56.2 55 45.5
PGSC0003DMG400020996 Solanum tuberosum HOM05D001166 ORTHO05D000992 3.0e-06 56.2 68 44.1
Solyc08g013980.4 Solanum lycopersicum HOM05D001166 ORTHO05D000992 3.9e-06 55.8 71 42.3
ECA248G1315 Erigeron canadensis HOM05D001166 ORTHO05D000992 5.0e-06 55.5 95 40.0
TPR.G6591 Trifolium pratense HOM05D001166 ORTHO05D000992 5.0e-06 55.5 117 35.9
Sabra14G0133000 Salix brachista HOM05D001166 ORTHO05D000992 6.6e-06 55.1 156 28.8


User provided reference genes

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