Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 0.0e+00 1282.3 667 100.0
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 1.9e-268 929.1 671 74.2
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 2.8e-158 563.1 673 48.9
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 7.8e-153 545.0 665 47.5
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 9.5e-151 538.1 675 48.6
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 4.0e-149 532.7 670 47.0
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 6.8e-149 531.9 670 47.3
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.3e-147 527.7 670 47.3
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 1.3e-144 517.7 670 46.4
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 1.3e-144 517.7 670 46.4
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 2.3e-144 516.9 666 46.1
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 4.3e-143 512.7 671 44.6
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 7.3e-143 511.9 674 47.3
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.1e-142 510.4 669 46.0
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 2.1e-142 510.4 670 46.6
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 6.2e-142 508.8 665 46.6
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 8.1e-142 508.4 683 44.7
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 2.6e-140 503.4 663 45.2
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 3.4e-140 503.1 675 46.1
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 3.4e-140 503.1 669 45.1
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 3.4e-140 503.1 673 44.4
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 1.3e-139 501.1 681 45.7
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 1.3e-139 501.1 669 44.7
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.7e-139 500.7 670 44.9
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 6.4e-139 498.8 670 44.6
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 6.4e-139 498.8 674 45.0
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.4e-138 496.9 672 45.1
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 2.4e-138 496.9 672 45.2
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 5.4e-138 495.7 637 47.1
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 9.2e-138 495.0 669 43.9
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.2e-137 494.6 672 44.9
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 2.1e-137 493.8 670 44.9
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 6.0e-137 492.3 669 44.8
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.5e-135 487.6 685 44.1
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 1.9e-135 487.3 665 44.1
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.5e-135 486.9 685 44.2
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 3.3e-135 486.5 666 44.1
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 5.6e-135 485.7 685 43.9
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 1.2e-134 484.6 668 44.6
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 3.6e-134 483.0 672 43.6
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.1e-133 481.5 685 43.5
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.4e-133 480.3 685 43.6
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.4e-133 480.3 685 43.6
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.4e-133 480.3 685 43.6
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 3.1e-133 479.9 670 43.1
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 8.9e-133 478.4 680 43.4
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.0e-132 477.2 685 43.8
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 4.4e-132 476.1 657 43.8
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 4.4e-132 476.1 669 44.4
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 1.3e-131 474.6 670 43.6
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 3.8e-131 473.0 662 44.0
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 8.4e-131 471.9 670 42.5
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 1.4e-130 471.1 670 44.8
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 1.4e-130 471.1 674 43.0
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 3.2e-130 469.9 670 41.8
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 5.4e-130 469.2 683 41.9
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 2.1e-129 467.2 674 42.9
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 2.7e-129 466.8 665 42.1
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 2.7e-129 466.8 670 43.3
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 1.0e-128 464.9 662 43.8
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 2.3e-128 463.8 667 43.6
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 1.5e-127 461.1 665 42.4
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 1.9e-127 460.7 670 43.1
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 1.9e-127 460.7 665 42.4
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 2.1e-126 457.2 668 43.0
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 1.1e-125 454.9 682 42.7
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 1.8e-125 454.1 681 41.6
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 1.8e-125 454.1 680 42.2
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 7.6e-124 448.7 675 41.2
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 8.4e-123 445.3 672 41.2
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 1.1e-122 444.9 675 41.2
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 4.2e-122 443.0 664 41.0
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 5.4e-122 442.6 670 40.6
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 7.1e-122 442.2 670 41.2
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 9.3e-122 441.8 687 41.0
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 1.2e-121 441.4 662 40.8
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 1.6e-121 441.0 665 40.6
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 1.3e-120 438.0 669 40.5
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 2.3e-120 437.2 671 42.9
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 3.0e-120 436.8 671 40.8
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 2.5e-119 433.7 668 40.9
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 3.3e-119 433.3 669 41.0
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 4.3e-119 433.0 673 41.8
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 5.6e-119 432.6 664 42.2
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 4.8e-118 429.5 668 39.1
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 4.8e-118 429.5 673 40.4
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 1.4e-117 427.9 632 41.8
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 4.0e-117 426.4 657 39.1
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 2.0e-116 424.1 677 38.8
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 4.5e-116 422.9 665 41.2
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 4.2e-114 416.4 677 40.2
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 4.6e-113 412.9 653 40.9
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 3.3e-111 406.8 588 43.9
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 3.7e-110 403.3 664 38.4
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 2.4e-109 400.6 675 39.3
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 1.2e-108 398.3 664 38.4
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 2.0e-108 397.5 665 37.7
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 2.1e-105 387.5 616 40.6
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 1.8e-104 384.4 649 39.1
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 3.9e-104 383.3 642 39.4
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 3.3e-103 380.2 593 40.6
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 5.3e-101 372.9 652 37.7
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 9.0e-101 372.1 669 37.5
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 7.6e-100 369.0 530 43.0
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 1.3e-99 368.2 667 37.6
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 1.0e-96 358.6 427 46.6
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.9e-95 354.4 450 44.9
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.4e-93 348.2 450 44.4
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 2.5e-90 337.4 663 36.8
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 2.5e-90 337.4 424 44.6
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 8.8e-80 302.4 371 44.5
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 8.2e-78 295.8 666 35.7
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 7.0e-77 292.7 680 33.4
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 9.1e-77 292.4 657 35.8
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 7.7e-76 289.3 659 34.6
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 2.9e-75 287.3 657 35.0
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 1.5e-74 285.0 658 34.3
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 3.2e-74 283.9 663 32.4
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 3.1e-69 267.3 645 33.6
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 7.0e-69 266.2 345 44.6
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 4.5e-68 263.5 666 32.6
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 3.2e-66 257.3 337 41.5
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 1.7e-62 245.0 665 33.2
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 4.8e-62 243.4 431 36.7
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 2.4e-61 241.1 646 31.4
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 3.4e-55 220.7 439 33.5
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 3.8e-51 207.2 656 29.6
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 2.5e-50 204.5 630 30.6
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.8e-49 201.1 645 29.9
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 8.0e-49 199.5 676 28.7
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.8e-48 196.4 458 33.6
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.7e-46 191.8 650 29.1
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.5e-39 168.7 451 31.9
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 3.5e-36 157.5 442 32.6
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 8.6e-35 152.9 252 40.5
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 5.8e-31 140.2 317 33.8
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 8.3e-30 136.3 166 48.2
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 5.6e-26 123.6 185 42.2
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 2.1e-25 121.7 117 56.4
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 2.8e-25 121.3 141 46.8
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 2.3e-24 118.2 113 51.3
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 1.5e-23 115.5 162 44.4
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 1.7e-22 112.1 117 52.1
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 5.4e-21 107.1 194 39.2
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 1.5e-18 99.0 108 48.1
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 9.6e-18 96.3 348 25.9
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 1.2e-17 95.9 367 26.7
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 1.2e-17 95.9 93 49.5
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 8.1e-17 93.2 85 51.8
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.1e-16 92.8 99 52.5
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 1.5e-15 89.0 93 46.2
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 1.5e-15 89.0 72 55.6
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 1.3e-14 85.9 85 49.4
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 1.1e-13 82.8 85 49.4
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 1.9e-13 82.0 141 39.0
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 2.1e-12 78.6 137 38.0
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 2.7e-12 78.2 83 55.4
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 4.6e-12 77.4 149 38.9
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 1.9e-10 72.0 111 40.5
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.5e-10 71.6 149 35.6
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 6.9e-08 63.5 85 36.5
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 7.6e-07 60.1 94 36.2
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 7.6e-07 60.1 206 28.6
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 7.6e-07 60.1 206 28.6
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 2.2e-06 58.5 67 53.7
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 2.9e-06 58.2 51 54.9
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 4.9e-06 57.4 75 48.0
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 4.9e-06 57.4 206 28.2


User provided reference genes

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