Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb425400 Zea mays HOM05D005970 ORTHO05D007146 3.1e-288 994.6 552 100.0
Os04g0489100 Oryza sativa ssp. japonica HOM05D005970 ORTHO05D007146 1.0e-251 873.2 491 88.6
MBI08_g17320_MAGBIO Magnolia biondii HOM05D005970 ORTHO05D007146 6.8e-171 604.7 493 62.3
Aqoxy2G04048 Aquilegia oxysepala HOM05D005970 ORTHO05D007146 1.4e-168 597.0 488 60.0
TAR362G0058 Trochodendron aralioides HOM05D005970 ORTHO05D007146 1.9e-165 586.6 504 59.3
HPP92_002722 Vanilla planifolia HOM05D005970 ORTHO05D007146 5.1e-158 562.0 484 59.1
HPP92_001247 Vanilla planifolia HOM05D005970 ORTHO05D007146 9.6e-157 557.8 493 58.0
Dinv22666 Davidia involucrata HOM05D005970 ORTHO05D007146 3.6e-156 555.8 493 58.2
MELO3C011504.2 Cucumis melo HOM05D005970 ORTHO05D007146 1.4e-155 553.9 494 55.9
CsaV3_6G003170 Cucumis sativus L. HOM05D005970 ORTHO05D007146 1.4e-155 553.9 492 55.7
Eucgr.A00211 Eucalyptus grandis HOM05D005970 ORTHO05D007146 1.2e-154 550.8 488 55.9
MD04G1032500 Malus domestica HOM05D005970 ORTHO05D007146 2.2e-153 546.6 489 56.6
Actinidia32934 Actinidia chinensis HOM05D005970 ORTHO05D007146 1.4e-152 543.9 489 58.1
HPP92_001263 Vanilla planifolia HOM05D005970 ORTHO05D007146 1.9e-152 543.5 492 56.9
COL.COLO4_24350 Corchorus olitorius HOM05D005970 ORTHO05D007146 4.2e-152 542.3 488 56.1
ATR0618G312 Amborella trichopoda HOM05D005970 ORTHO05D007146 3.5e-151 539.3 477 58.5
CANSAT80G1971 Cannabis sativa HOM05D005970 ORTHO05D007146 3.5e-151 539.3 498 57.0
PGR083G2204 Punica granatum HOM05D005970 ORTHO05D007146 3.0e-150 536.2 496 55.0
CSS0014236 Camellia sinensis var. sinensis HOM05D005970 ORTHO05D007146 5.1e-150 535.4 491 55.6
Prupe.1G181900 Prunus persica HOM05D005970 ORTHO05D007146 6.7e-150 535.0 486 56.2
Ah.12g062330 Amaranthus hybridus HOM05D005970 ORTHO05D007146 3.1e-147 526.2 494 56.1
Duzib151G0884 Durio zibethinus HOM05D005970 ORTHO05D007146 2.6e-146 523.1 491 56.6
RcHm_v2.0_Chr4g0408981 Rosa chinensis HOM05D005970 ORTHO05D007146 3.4e-146 522.7 490 54.7
Sc22g0002260 Simmondsia chinensis HOM05D005970 ORTHO05D007146 3.4e-146 522.7 488 55.5
GSVIVG01013548001 Vitis vinifera HOM05D005970 ORTHO05D007146 1.0e-145 521.2 402 63.2
Gohir.A02G013401 Gossypium hirsutum HOM05D005970 ORTHO05D007146 2.2e-145 520.0 489 55.4
Potri.014G150800 Populus trichocarpa HOM05D005970 ORTHO05D007146 3.8e-145 519.2 499 54.1
Gorai.005G017800 Gossypium raimondii HOM05D005970 ORTHO05D007146 1.1e-144 517.7 489 55.0
Atru.chr3.1658_Atru.chr3.1659 Acer truncatum HOM05D005970 ORTHO05D007146 3.2e-144 516.2 490 54.5
Lj5g0014069 Lotus japonicus HOM05D005970 ORTHO05D007146 3.2e-144 516.2 487 55.6
Ciclev10023314m.g Citrus clementina HOM05D005970 ORTHO05D007146 1.8e-142 510.4 491 53.2
arahy.Tifrunner.gnm1.ann1.ILR90A Arachis hypogaea HOM05D005970 ORTHO05D007146 1.3e-140 504.2 487 53.4
VMungo0720G0532 Vigna mungo HOM05D005970 ORTHO05D007146 1.4e-139 500.7 486 55.8
Medtr1g116780 Medicago truncatula HOM05D005970 ORTHO05D007146 1.8e-139 500.4 493 55.2
TPR.G8892 Trifolium pratense HOM05D005970 ORTHO05D007146 5.3e-139 498.8 488 54.7
FvH4_4g11690 Fragaria vesca HOM05D005970 ORTHO05D007146 2.6e-138 496.5 487 53.0
THA.LOC104800916 Tarenaya hassleriana HOM05D005970 ORTHO05D007146 2.6e-138 496.5 486 53.7
arahy.Tifrunner.gnm1.ann1.R0ZLJW Arachis hypogaea HOM05D005970 ORTHO05D007146 5.9e-138 495.4 499 52.5
AL1G15700 Arabidopsis lyrata HOM05D005970 ORTHO05D007146 2.2e-137 493.4 488 53.1
Ca_11416_v3 Cicer arietinum L. HOM05D005970 ORTHO05D007146 5.0e-137 492.3 453 55.2
Glyma.20G248000 Glycine max HOM05D005970 ORTHO05D007146 1.4e-136 490.7 398 60.1
Peaxi162Scf00286g00235 Petunia axillaris HOM05D005970 ORTHO05D007146 1.9e-136 490.3 489 53.4
Lalb_Chr06g0164591 Lupinus albus HOM05D005970 ORTHO05D007146 7.2e-136 488.4 507 51.7
Carub.0001s0513 Capsella rubella HOM05D005970 ORTHO05D007146 2.7e-135 486.5 488 53.3
Nitab4.5_0002313g0060 Nicotiana tabacum HOM05D005970 ORTHO05D007146 1.3e-134 484.2 480 54.4
Sopen09g036380 Solanum pennellii HOM05D005970 ORTHO05D007146 1.8e-134 483.8 487 52.8
Nitab4.5_0001049g0010 Nicotiana tabacum HOM05D005970 ORTHO05D007146 2.3e-134 483.4 480 54.2
AT1G05790 Arabidopsis thaliana HOM05D005970 ORTHO05D007146 5.1e-134 482.3 488 52.3
Thhalv10006938m.g Eutrema salsugineum HOM05D005970 ORTHO05D007146 5.1e-134 482.3 487 52.8
Sp1g04590 Schrenkiella parvula HOM05D005970 ORTHO05D007146 1.5e-133 480.7 488 53.1
A10p04500 Brassica napus HOM05D005970 ORTHO05D007146 1.9e-133 480.3 488 53.9
Hma1.2p1_1477F.1_g285890 Hydrangea macrophylla HOM05D005970 ORTHO05D007146 1.9e-133 480.3 439 55.6
HanXRQChr17g0557031 Helianthus annuus HOM05D005970 ORTHO05D007146 3.3e-133 479.6 549 47.4
Solyc09g098450.4 Solanum lycopersicum HOM05D005970 ORTHO05D007146 3.3e-133 479.6 486 52.5
Sed0012260 Sechium edule HOM05D005970 ORTHO05D007146 4.3e-133 479.2 329 66.6
C08p02230 Brassica napus HOM05D005970 ORTHO05D007146 5.7e-133 478.8 488 53.5
BolC8t47015H Brassica oleracea HOM05D005970 ORTHO05D007146 5.7e-133 478.8 488 53.5
FAN12G0387 Fragaria x ananassa HOM05D005970 ORTHO05D007146 5.7e-133 478.8 502 51.0
Psat6g242520 Pisum sativum HOM05D005970 ORTHO05D007146 9.7e-133 478.0 486 52.3
QL10p046561 Quercus lobata HOM05D005970 ORTHO05D007146 1.6e-132 477.2 568 47.2
CAN.G710.55 Capsicum annuum HOM05D005970 ORTHO05D007146 4.8e-132 475.7 485 52.2
Rhsim09G0037500 Rhododendron simsii HOM05D005970 ORTHO05D007146 4.8e-132 475.7 616 44.5
Thecc.04G181600 Theobroma cacao HOM05D005970 ORTHO05D007146 6.3e-132 475.3 329 69.0
Lj3A262T16 Lonicera japonica HOM05D005970 ORTHO05D007146 8.2e-132 474.9 343 66.5
Aa31LG1G8570 Aethionema arabicum HOM05D005970 ORTHO05D007146 1.4e-131 474.2 488 51.8
A08p36290 Brassica napus HOM05D005970 ORTHO05D007146 3.1e-131 473.0 488 52.5
BraA08t35533Z Brassica rapa HOM05D005970 ORTHO05D007146 3.1e-131 473.0 488 52.5
ECA234G4469 Erigeron canadensis HOM05D005970 ORTHO05D007146 2.2e-129 466.8 434 53.2
BraA10t42716Z Brassica rapa HOM05D005970 ORTHO05D007146 1.4e-128 464.2 496 52.6
CiPaw.01G106400 Carya illinoinensis HOM05D005970 ORTHO05D007146 5.5e-128 462.2 336 66.1
Sabra14G0114200 Salix brachista HOM05D005970 ORTHO05D007146 8.8e-126 454.9 638 42.2
Gohir.D02G014300 Gossypium hirsutum HOM05D005970 ORTHO05D007146 9.7e-125 451.4 336 63.7
Lsat_1_v5_gn_4_37800 Lactuca sativa HOM05D005970 ORTHO05D007146 1.7e-124 450.7 377 56.5
AUR62042870 Chenopodium quinoa HOM05D005970 ORTHO05D007146 1.5e-122 444.1 532 48.1
C05p04110 Brassica napus HOM05D005970 ORTHO05D007146 1.3e-121 441.0 474 51.9
FAN12G1273 Fragaria x ananassa HOM05D005970 ORTHO05D007146 6.5e-121 438.7 321 65.1
FAN07G1016 Fragaria x ananassa HOM05D005970 ORTHO05D007146 1.1e-120 438.0 320 64.4
SMO336G0028 Selaginella moellendorffii HOM05D005970 ORTHO05D007146 6.1e-119 432.2 401 52.6
Mapoly0123s0015 Marchantia polymorpha HOM05D005970 ORTHO05D007146 1.0e-118 431.4 423 50.4
SMO337G0034 Selaginella moellendorffii HOM05D005970 ORTHO05D007146 3.9e-118 429.5 408 51.2
AagrBONN_evm.TU.Sc2ySwM_368.857 Anthoceros agrestis HOM05D005970 ORTHO05D007146 1.7e-116 424.1 516 46.5
BolC5t29189H Brassica oleracea HOM05D005970 ORTHO05D007146 2.0e-114 417.2 487 49.7
SMO337G0042 Selaginella moellendorffii HOM05D005970 ORTHO05D007146 3.8e-113 412.9 501 46.7
Cpa.g.sc164.4 Carica papaya HOM05D005970 ORTHO05D007146 2.7e-111 406.8 311 63.0
AagrBONN_evm.TU.Sc2ySwM_368.849 Anthoceros agrestis HOM05D005970 ORTHO05D007146 7.0e-107 392.1 355 54.1
vmacro00562 Vaccinium macrocarpon HOM05D005970 ORTHO05D007146 1.5e-104 384.4 530 43.0
CBR_g2768 Chara braunii HOM05D005970 ORTHO05D007146 4.8e-100 369.4 479 43.8
Sabra02G0176700 Salix brachista HOM05D005970 ORTHO05D007146 2.4e-99 367.1 499 44.7
Cc00_g08710 Coffea canephora HOM05D005970 ORTHO05D007146 5.9e-98 362.5 369 52.8
Haze_11055 Corylus avellana HOM05D005970 ORTHO05D007146 1.4e-91 341.3 461 45.8
ClCG08G003970 Citrullus lanatus HOM05D005970 ORTHO05D007146 1.3e-89 334.7 247 62.3
Pp3c6_14360 Physcomitrium patens HOM05D005970 ORTHO05D007146 4.0e-86 323.2 518 39.8
CDE09G0649 Ceratophyllum demersum HOM05D005970 ORTHO05D007146 6.8e-86 322.4 487 42.3
Nn1g09815 Nelumbo nucifera HOM05D005970 ORTHO05D007146 1.3e-84 318.2 226 64.6
Phvul.007G002300 Phaseolus vulgaris HOM05D005970 ORTHO05D007146 2.7e-82 310.5 226 63.7
Pp3c5_12210 Physcomitrium patens HOM05D005970 ORTHO05D007146 4.6e-82 309.7 443 41.3
Nn1g09841 Nelumbo nucifera HOM05D005970 ORTHO05D007146 4.9e-60 236.5 174 63.8
DCAR_028456 Daucus carota HOM05D005970 ORTHO05D007146 2.4e-51 207.6 191 55.5
CAN.G959.7 Capsicum annuum HOM05D005970 ORTHO05D007146 5.4e-51 206.5 182 57.7
Potri.002G231534 Populus trichocarpa HOM05D005970 ORTHO05D007146 3.8e-44 183.7 145 61.4
Potri.002G231501 Populus trichocarpa HOM05D005970 ORTHO05D007146 6.7e-41 172.9 154 57.1
Manes.04G050700 Manihot esculenta HOM05D005970 ORTHO05D007146 6.9e-38 162.9 136 59.6
CARHR005310 Cardamine hirsuta HOM05D005970 ORTHO05D007146 1.2e-34 152.1 134 57.5
SMO001G0011 Selaginella moellendorffii HOM05D005970 ORTHO05D007146 8.7e-33 146.0 174 45.4
Peaxi162Scf00286g00234 Petunia axillaris HOM05D005970 ORTHO05D007146 7.1e-27 126.3 119 51.3
GSVIVG01013576001 Vitis vinifera HOM05D005970 ORTHO05D007146 7.6e-21 106.3 59 69.5
Glyma.10G297100 Glycine max HOM05D005970 ORTHO05D007146 5.5e-19 100.1 95 53.7
DCAR_028457 Daucus carota HOM05D005970 ORTHO05D007146 1.7e-15 88.6 66 59.1
FAN07G1785 Fragaria x ananassa HOM05D005970 ORTHO05D007146 2.3e-09 68.2 125 34.4
Cpa.g.sc164.8 Carica papaya HOM05D005970 ORTHO05D007146 2.8e-07 61.2 42 64.3
SMO199G0009 Selaginella moellendorffii HOM05D005970 ORTHO05D007146 2.8e-07 61.2 75 42.7
Rhsim01G0266000 Rhododendron simsii HOM05D004750 ORTHO05D006207 3.7e-07 60.8 159 30.2
Zm00001eb144480 Zea mays HOM05D005970 ORTHO05D007146 3.7e-07 60.8 40 62.5
Cfa002398 Carpinus fangiana HOM05D004750 ORTHO05D006207 6.3e-07 60.1 163 31.3
vmacro00561 Vaccinium macrocarpon HOM05D005970 ORTHO05D007146 6.3e-07 60.1 43 62.8
Pp3c8_13590 Physcomitrium patens HOM05D004750 ORTHO05D006207 8.2e-07 59.7 129 38.0
Aa31LG1G24270 Aethionema arabicum HOM05D004750 ORTHO05D006207 1.1e-06 59.3 159 31.4
Haze_24596 Corylus avellana HOM05D004750 ORTHO05D006207 1.4e-06 58.9 173 30.1
Thhalv10016471m.g Eutrema salsugineum HOM05D004750 ORTHO05D006207 1.4e-06 58.9 159 32.1
Os01g0900200 Oryza sativa ssp. japonica HOM05D005970 ORTHO05D007146 1.4e-06 58.9 38 65.8
THA.LOC104802241 Tarenaya hassleriana HOM05D004750 ORTHO05D006207 1.4e-06 58.9 159 30.8
TWI18G0451 Tripterygium wilfordii HOM05D004750 ORTHO05D006207 1.4e-06 58.9 159 30.2
BcaB04g17273 Brassica carinata HOM05D004750 ORTHO05D006207 1.8e-06 58.5 186 32.8
Sp4g24590 Schrenkiella parvula HOM05D004750 ORTHO05D006207 1.8e-06 58.5 127 37.8
vmacro14850 Vaccinium macrocarpon HOM05D004750 ORTHO05D006207 1.8e-06 58.5 162 29.0
Carub.0004s2484 Capsella rubella HOM05D004750 ORTHO05D006207 2.4e-06 58.2 127 36.2
SMO337G0053 Selaginella moellendorffii HOM05D005970 ORTHO05D007146 2.4e-06 58.2 48 56.2
PGR031G0841 Punica granatum HOM05D004750 ORTHO05D006207 4.1e-06 57.4 159 30.2
GSVIVG01028293001 Vitis vinifera HOM05D004750 ORTHO05D006207 5.3e-06 57.0 158 29.1
Atru.chr9.1613 Acer truncatum HOM05D005970 ORTHO05D010500 9.1e-06 56.2 53 45.3
Haze_11058 Corylus avellana HOM05D005970 ORTHO05D007146 9.1e-06 56.2 50 54.0
Potri.002G231567 Populus trichocarpa HOM05D005970 ORTHO05D007146 9.1e-06 56.2 53 50.9


User provided reference genes

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