Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb425130 Zea mays HOM05D007622 ORTHO05D009409 9.2e-65 250.0 119 100.0
Os04g0482900 Oryza sativa ssp. japonica HOM05D007622 ORTHO05D009409 1.5e-46 189.5 124 78.2
Ciclev10017228m.g Citrus clementina HOM05D007622 ORTHO05D009409 3.4e-43 178.3 120 72.5
Potri.001G344700 Populus trichocarpa HOM05D007622 ORTHO05D009409 5.4e-41 171.0 120 71.7
PGR083G1671 Punica granatum HOM05D007622 ORTHO05D009409 1.6e-40 169.5 120 70.0
TWI36G0684 Tripterygium wilfordii HOM05D007622 ORTHO05D009409 1.6e-40 169.5 120 70.8
GSVIVG01032401001 Vitis vinifera HOM05D007622 ORTHO05D009409 6.0e-40 167.5 120 73.3
Sabra16G0223800 Salix brachista HOM05D007622 ORTHO05D009409 1.0e-39 166.8 120 69.2
arahy.Tifrunner.gnm1.ann1.QKG8XN Arachis hypogaea HOM05D007622 ORTHO05D009409 1.3e-39 166.4 120 69.2
CSS0000151 Camellia sinensis var. sinensis HOM05D007622 ORTHO05D009409 1.8e-39 166.0 123 66.7
CSS0044104 Camellia sinensis var. sinensis HOM05D007622 ORTHO05D009409 1.8e-39 166.0 123 66.7
CANSAT64G0926 Cannabis sativa HOM05D007622 ORTHO05D009409 3.0e-39 165.2 106 74.5
Eucgr.J02247 Eucalyptus grandis HOM05D007622 ORTHO05D009409 3.9e-39 164.9 102 77.5
Nn4g22626 Nelumbo nucifera HOM05D007622 ORTHO05D009409 5.1e-39 164.5 119 67.2
PGSC0003DMG400012602 Solanum tuberosum HOM05D007622 ORTHO05D009409 5.1e-39 164.5 119 65.5
COL.COLO4_29125 Corchorus olitorius HOM05D000285 ORTHO05D009409 6.7e-39 164.1 104 72.1
Duzib147G0488 Durio zibethinus HOM05D007622 ORTHO05D009409 6.7e-39 164.1 122 66.4
Sopen02g037920 Solanum pennellii HOM05D007622 ORTHO05D009409 6.7e-39 164.1 119 64.7
Dinv35108 Davidia involucrata HOM05D007622 ORTHO05D009409 8.7e-39 163.7 102 76.5
CiPaw.04G028800 Carya illinoinensis HOM05D007622 ORTHO05D009409 1.1e-38 163.3 123 69.9
Solyc02g093350.3 Solanum lycopersicum HOM05D007622 ORTHO05D009409 1.1e-38 163.3 119 64.7
Nitab4.5_0003318g0060 Nicotiana tabacum HOM05D007622 ORTHO05D009409 1.5e-38 162.9 119 65.5
Phvul.008G153900 Phaseolus vulgaris HOM05D007622 ORTHO05D009409 1.5e-38 162.9 104 75.0
Lalb_Chr24g0402871 Lupinus albus HOM05D007622 ORTHO05D009409 1.9e-38 162.5 116 69.0
Peaxi162Scf00129g01661 Petunia axillaris HOM05D007622 ORTHO05D009409 1.9e-38 162.5 119 65.5
QL02p074426 Quercus lobata HOM05D007622 ORTHO05D009409 1.9e-38 162.5 105 72.4
Potri.017G071300 Populus trichocarpa HOM05D007622 ORTHO05D009409 2.5e-38 162.2 120 65.8
HanXRQChr09g0255201 Helianthus annuus HOM05D007622 ORTHO05D009409 3.3e-38 161.8 102 73.5
Nitab4.5_0001860g0100 Nicotiana tabacum HOM05D007622 ORTHO05D009409 3.3e-38 161.8 119 64.7
Gohir.D07G230100 Gossypium hirsutum HOM05D007622 ORTHO05D009409 5.6e-38 161.0 121 66.1
Gorai.001G265400 Gossypium raimondii HOM05D007622 ORTHO05D009409 5.6e-38 161.0 121 66.1
MD17G1026500 Malus domestica HOM05D007622 ORTHO05D009409 7.4e-38 160.6 120 67.5
THA.LOC104805368 Tarenaya hassleriana HOM05D007622 ORTHO05D009409 7.4e-38 160.6 120 64.2
Gohir.A07G223400 Gossypium hirsutum HOM05D007622 ORTHO05D009409 1.3e-37 159.8 121 64.5
Cc07_g01640 Coffea canephora HOM05D007622 ORTHO05D009409 1.6e-37 159.5 105 70.5
Glyma.19G060600 Glycine max HOM05D007622 ORTHO05D009409 2.8e-37 158.7 112 70.5
MSTRG.15530 Avicennia marina HOM05D007622 ORTHO05D009409 3.7e-37 158.3 117 65.0
Glyma.16G070800 Glycine max HOM05D007622 ORTHO05D009409 3.7e-37 158.3 104 75.0
Sc03g0007350 Simmondsia chinensis HOM05D007622 ORTHO05D009409 3.7e-37 158.3 119 67.2
Atru.chr6.2402 Acer truncatum HOM05D007622 ORTHO05D009409 4.8e-37 157.9 120 66.7
Ah.03g137040 Amaranthus hybridus HOM05D007622 ORTHO05D009409 4.8e-37 157.9 103 72.8
CDE02G3805 Ceratophyllum demersum HOM05D007622 ORTHO05D009409 4.8e-37 157.9 123 68.3
CAN.G473.12 Capsicum annuum HOM05D007622 ORTHO05D009409 6.2e-37 157.5 119 62.2
Oeu013968.1 Olea europaea HOM05D007622 ORTHO05D009409 8.1e-37 157.1 119 64.7
Prupe.3G292200 Prunus persica HOM05D007622 ORTHO05D009409 8.1e-37 157.1 120 65.8
ECA232G2324 Erigeron canadensis HOM05D007622 ORTHO05D009409 1.1e-36 156.8 113 64.6
Lsat_1_v5_gn_4_184040 Lactuca sativa HOM05D007622 ORTHO05D009409 1.1e-36 156.8 102 70.6
PSO111G0004 Papaver somniferum HOM05D007622 ORTHO05D009409 1.1e-36 156.8 120 65.8
SGA_v2.0_scaffold195G40817 Striga asiatica HOM05D007622 ORTHO05D009409 1.1e-36 156.8 120 65.8
CDE09G0341 Ceratophyllum demersum HOM05D007622 ORTHO05D009409 1.4e-36 156.4 104 74.0
Thecc.04G017800 Theobroma cacao HOM05D007622 ORTHO05D009409 1.4e-36 156.4 121 66.1
Hund12976 Selenicereus undatus HOM05D007622 ORTHO05D009409 1.8e-36 156.0 102 73.5
Actinidia16945 Actinidia chinensis HOM05D007622 ORTHO05D009409 5.3e-36 154.5 102 73.5
Medtr7g033680 Medicago truncatula HOM05D007622 ORTHO05D009409 5.3e-36 154.5 104 72.1
Manes.15G151000 Manihot esculenta HOM05D007622 ORTHO05D009409 6.9e-36 154.1 93 77.4
SalBow1G5210 Salvia bowleyana HOM05D007622 ORTHO05D009409 1.2e-35 153.3 119 63.9
EL10Ac6g14084 Beta vulgaris HOM05D007622 ORTHO05D009409 2.0e-35 152.5 102 68.6
Aqoxy5G03768 Aquilegia oxysepala HOM05D007622 ORTHO05D009409 3.4e-35 151.8 119 62.2
DCAR_001440 Daucus carota HOM05D007622 ORTHO05D009409 4.5e-35 151.4 102 70.6
MELO3C021583.2 Cucumis melo HOM05D007622 ORTHO05D009409 5.8e-35 151.0 105 68.6
CsaV3_5G027110 Cucumis sativus L. HOM05D007622 ORTHO05D009409 5.8e-35 151.0 105 68.6
FvH4_6g51480 Fragaria vesca HOM05D007622 ORTHO05D009409 7.6e-35 150.6 120 64.2
FAN02G2753 Fragaria x ananassa HOM05D007622 ORTHO05D009409 7.6e-35 150.6 120 64.2
FAN09G4241 Fragaria x ananassa HOM05D007622 ORTHO05D009409 7.6e-35 150.6 120 64.2
FAN14G0072 Fragaria x ananassa HOM05D007622 ORTHO05D009409 7.6e-35 150.6 120 64.2
arahy.Tifrunner.gnm1.ann1.30MLP8 Arachis hypogaea HOM05D007622 ORTHO05D009409 1.0e-34 150.2 130 62.3
PSO067G0063 Papaver somniferum HOM05D007622 ORTHO05D009409 1.0e-34 150.2 124 63.7
RcHm_v2.0_Chr2g0173121 Rosa chinensis HOM05D007622 ORTHO05D009409 1.0e-34 150.2 119 63.0
Lj1g0022477 Lotus japonicus HOM05D007622 ORTHO05D009409 2.2e-34 149.1 82 81.7
TAR629G2574 Trochodendron aralioides HOM05D007622 ORTHO05D009409 2.9e-34 148.7 102 74.5
ClCG09G019280 Citrullus lanatus HOM05D007622 ORTHO05D009409 8.4e-34 147.1 102 68.6
FAN05G3531 Fragaria x ananassa HOM05D007622 ORTHO05D009409 8.4e-34 147.1 120 63.3
Sp7g01380 Schrenkiella parvula HOM05D007622 ORTHO05D009409 2.5e-33 145.6 121 59.5
Sed0017852 Sechium edule HOM05D007622 ORTHO05D009409 3.2e-33 145.2 102 68.6
AT5G40500 Arabidopsis thaliana HOM05D007622 ORTHO05D009409 4.2e-33 144.8 105 62.9
AL7G49320 Arabidopsis lyrata HOM05D007622 ORTHO05D009409 9.3e-33 143.7 121 58.7
Migut.H00074 Erythranthe guttata HOM05D007622 ORTHO05D009409 9.3e-33 143.7 102 66.7
BcaB06g27524 Brassica carinata HOM05D007622 ORTHO05D009409 1.2e-32 143.3 105 63.8
A04p13550 Brassica napus HOM05D000285 ORTHO05D009409 1.2e-32 143.3 105 63.8
C04p47330 Brassica napus HOM05D000285 ORTHO05D009409 1.2e-32 143.3 105 63.8
BolC4t26334H Brassica oleracea HOM05D000285 ORTHO05D009409 1.2e-32 143.3 105 63.8
BraA04t17014Z Brassica rapa HOM05D000285 ORTHO05D009409 1.2e-32 143.3 105 63.8
Thhalv10027995m.g Eutrema salsugineum HOM05D007622 ORTHO05D009409 1.2e-32 143.3 120 58.3
Carub.0007s3502 Capsella rubella HOM05D007622 ORTHO05D009409 1.6e-32 142.9 122 58.2
Duzib264G0071 Durio zibethinus HOM05D007622 ORTHO05D009409 2.1e-32 142.5 87 74.7
TPR.G1098 Trifolium pratense HOM05D007622 ORTHO05D009409 2.7e-32 142.1 81 80.2
SEGI_15693 Sequoiadendron giganteum HOM05D007622 ORTHO05D009409 5.7e-30 134.4 102 62.7
Rhsim08G0048800 Rhododendron simsii HOM05D007622 ORTHO05D009409 1.3e-26 123.2 126 55.6
vmacro18290 Vaccinium macrocarpon HOM05D007622 ORTHO05D009409 3.8e-26 121.7 80 73.8
Pp3c12_19400 Physcomitrium patens HOM05D007622 ORTHO05D009409 1.1e-25 120.2 102 56.9
AagrBONN_evm.TU.Sc2ySwM_117.2472 Anthoceros agrestis HOM05D007622 ORTHO05D009409 1.6e-24 116.3 98 57.1
Aa31LG9G1100 Aethionema arabicum HOM05D001812 ORTHO05D001874 2.3e-23 112.5 101 55.4
SMO367G1081 Selaginella moellendorffii HOM05D007622 ORTHO05D009409 1.5e-22 109.8 98 51.0
Psat3g166480 Pisum sativum HOM05D007622 ORTHO05D009409 3.3e-22 108.6 82 64.6
CBR_g34193 Chara braunii HOM05D007622 ORTHO05D009409 7.4e-22 107.5 106 49.1
MD09G1025400 Malus domestica HOM05D007622 ORTHO05D009409 3.7e-21 105.1 60 78.3
TAR371G1070 Trochodendron aralioides HOM05D007622 ORTHO05D009409 1.4e-20 103.2 70 67.1
Cre12.g498700 Chlamydomonas reinhardtii HOM05D007622 ORTHO05D009409 2.3e-15 85.9 85 45.9
PRCOL_00004665 Prasinoderma coloniale HOM05D007622 ORTHO05D009409 3.8e-10 68.6 95 33.7
MCO04G361 Micromonas commoda HOM05D007622 ORTHO05D009409 1.9e-09 66.2 100 36.0
VMungo1383G1925 Vigna mungo HOM05D007622 ORTHO05D009409 1.1e-06 57.0 43 65.1


User provided reference genes

Program Settings