Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb424130 Zea mays HOM05D006840 ORTHO05D008588 2.9e-65 251.9 140 100.0
Zm00001eb424170 Zea mays HOM05D006840 ORTHO05D008588 2.9e-65 251.9 140 100.0
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 2.7e-23 112.5 62 85.5
Os01g0912700 Oryza sativa ssp. japonica HOM05D006840 ORTHO05D008588 1.5e-21 106.7 64 75.0
Thhalv10018969m.g Eutrema salsugineum HOM05D006840 ORTHO05D008588 1.7e-17 93.2 97 50.5
TWI75G0198 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 1.7e-17 93.2 65 69.2
GSVIVG01019072001 Vitis vinifera HOM05D006840 ORTHO05D008588 1.7e-17 93.2 74 62.2
PGR119G2059 Punica granatum HOM05D006840 ORTHO05D008588 2.9e-17 92.4 64 68.8
Carub.0002s1076 Capsella rubella HOM05D006840 ORTHO05D008588 3.8e-17 92.0 93 52.7
CiPaw.08G114500 Carya illinoinensis HOM05D006840 ORTHO05D008588 4.9e-17 91.7 62 69.4
DCAR_028385 Daucus carota HOM05D006840 ORTHO05D008588 4.9e-17 91.7 72 62.5
Eucgr.B01421 Eucalyptus grandis HOM05D006840 ORTHO05D008588 4.9e-17 91.7 64 67.2
Aqoxy5G00025 Aquilegia oxysepala HOM05D006840 ORTHO05D008588 6.5e-17 91.3 64 67.2
Hund21908 Selenicereus undatus HOM05D006840 ORTHO05D008588 6.5e-17 91.3 60 71.7
AL2G20230 Arabidopsis lyrata HOM05D006840 ORTHO05D008588 8.4e-17 90.9 64 65.6
CARHR056840 Cardamine hirsuta HOM05D006840 ORTHO05D008588 8.4e-17 90.9 64 64.1
AT1G65230 Arabidopsis thaliana HOM05D006840 ORTHO05D008588 1.4e-16 90.1 100 49.0
BcaB05g24097 Brassica carinata HOM05D006840 ORTHO05D008588 1.4e-16 90.1 74 58.1
CDE02G0188 Ceratophyllum demersum HOM05D006840 ORTHO05D008588 1.4e-16 90.1 62 66.1
Sc06g0005020 Simmondsia chinensis HOM05D006840 ORTHO05D008588 1.4e-16 90.1 62 64.5
Thecc.05G192600 Theobroma cacao HOM05D006840 ORTHO05D008588 1.4e-16 90.1 71 63.4
vmacro12041 Vaccinium macrocarpon HOM05D006840 ORTHO05D008588 1.4e-16 90.1 65 64.6
Gohir.D08G247000 Gossypium hirsutum HOM05D006840 ORTHO05D008588 2.5e-16 89.4 64 65.6
Gorai.004G263500 Gossypium raimondii HOM05D006840 ORTHO05D008588 2.5e-16 89.4 64 65.6
Manes.13G004800 Manihot esculenta HOM05D006840 ORTHO05D008588 2.5e-16 89.4 62 67.7
Rhsim06G0181200 Rhododendron simsii HOM05D006840 ORTHO05D008588 2.5e-16 89.4 66 63.6
THA.LOC104821923 Tarenaya hassleriana HOM05D006840 ORTHO05D008588 2.5e-16 89.4 60 66.7
Duzib106G1767 Durio zibethinus HOM05D006840 ORTHO05D008588 3.2e-16 89.0 62 67.7
Gohir.A08G226600 Gossypium hirsutum HOM05D006840 ORTHO05D008588 3.2e-16 89.0 124 44.4
Aa31LG2G2360 Aethionema arabicum HOM05D006840 ORTHO05D008588 4.2e-16 88.6 94 51.1
Glyma.09G249400 Glycine max HOM05D006840 ORTHO05D008588 4.2e-16 88.6 60 68.3
HanXRQChr15g0492181 Helianthus annuus HOM05D006840 ORTHO05D008588 4.2e-16 88.6 62 66.1
Sp5g19910 Schrenkiella parvula HOM05D006840 ORTHO05D008588 5.5e-16 88.2 62 64.5
SGA_v2.0_scaffold62G21495 Striga asiatica HOM05D006840 ORTHO05D008588 5.5e-16 88.2 66 63.6
BolC2t08265H Brassica oleracea HOM05D006840 ORTHO05D008588 7.1e-16 87.8 72 58.3
Lj1A575G23 Lonicera japonica HOM05D006840 ORTHO05D008588 7.1e-16 87.8 65 63.1
Lj1A595G27 Lonicera japonica HOM05D006840 ORTHO05D008588 7.1e-16 87.8 65 63.1
A02p13110 Brassica napus HOM05D006840 ORTHO05D008588 9.3e-16 87.4 72 58.3
BraA02t06367Z Brassica rapa HOM05D006840 ORTHO05D008588 9.3e-16 87.4 72 58.3
HanXRQChr15g0491491 Helianthus annuus HOM05D006840 ORTHO05D008588 9.3e-16 87.4 62 66.1
Nn7g37259 Nelumbo nucifera HOM05D006840 ORTHO05D008588 9.3e-16 87.4 60 66.7
Peaxi162Scf00529g00710 Petunia axillaris HOM05D006840 ORTHO05D008588 9.3e-16 87.4 65 64.6
QL01p049413 Quercus lobata HOM05D006840 ORTHO05D008588 9.3e-16 87.4 62 64.5
TWI36G0520 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 9.3e-16 87.4 65 64.6
arahy.Tifrunner.gnm1.ann1.1ED5VS Arachis hypogaea HOM05D006840 ORTHO05D008588 1.2e-15 87.0 71 62.0
arahy.Tifrunner.gnm1.ann1.SXK3FV Arachis hypogaea HOM05D006840 ORTHO05D008588 1.2e-15 87.0 60 66.7
BcaC03g14685 Brassica carinata HOM05D006840 ORTHO05D008588 1.2e-15 87.0 97 49.5
Cc09_g03780 Coffea canephora HOM05D006840 ORTHO05D008588 1.2e-15 87.0 70 60.0
Glyma.18G243000 Glycine max HOM05D006840 ORTHO05D008588 1.2e-15 87.0 60 68.3
Ciclev10013335m.g Citrus clementina HOM05D006840 ORTHO05D008588 1.6e-15 86.7 72 58.3
ATR0215G001 Amborella trichopoda HOM05D006840 ORTHO05D008588 2.1e-15 86.3 91 51.6
Phvul.008G053500 Phaseolus vulgaris HOM05D006840 ORTHO05D008588 2.1e-15 86.3 60 68.3
C02p21250 Brassica napus HOM05D006840 ORTHO05D008588 2.7e-15 85.9 72 56.9
Cfa006254 Carpinus fangiana HOM05D006840 ORTHO05D008588 2.7e-15 85.9 60 68.3
Haze_04572 Corylus avellana HOM05D006840 ORTHO05D008588 2.7e-15 85.9 62 66.1
MD12G1264100 Malus domestica HOM05D006840 ORTHO05D008588 2.7e-15 85.9 75 56.0
ECA232G2794 Erigeron canadensis HOM05D006840 ORTHO05D008588 3.5e-15 85.5 62 62.9
Nitab4.5_0000083g0050 Nicotiana tabacum HOM05D006840 ORTHO05D008588 3.5e-15 85.5 62 64.5
Atru.BG.274.p Acer truncatum HOM05D006840 ORTHO05D008588 4.6e-15 85.1 60 65.0
CSS0048734 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 4.6e-15 85.1 62 64.5
SalBow1G4059 Salvia bowleyana HOM05D006840 ORTHO05D008588 4.6e-15 85.1 65 61.5
EL10Ac4g09995 Beta vulgaris HOM05D006840 ORTHO05D008588 7.9e-15 84.3 61 62.3
ClCG03G011690 Citrullus lanatus HOM05D006840 ORTHO05D008588 7.9e-15 84.3 65 61.5
MELO3C010008.2 Cucumis melo HOM05D006840 ORTHO05D008588 7.9e-15 84.3 65 61.5
CsaV3_1G044150 Cucumis sativus L. HOM05D006840 ORTHO05D008588 7.9e-15 84.3 65 61.5
VMungo1383G2163 Vigna mungo HOM05D006840 ORTHO05D008588 7.9e-15 84.3 75 56.0
CANSAT54G1191 Cannabis sativa HOM05D006840 ORTHO05D008588 1.0e-14 84.0 57 66.7
Lsat_1_v5_gn_0_18400 Lactuca sativa HOM05D006840 ORTHO05D008588 1.0e-14 84.0 61 62.3
MSTRG.27397 Avicennia marina HOM05D006840 ORTHO05D008588 1.3e-14 83.6 65 60.0
Dinv29090 Davidia involucrata HOM05D006840 ORTHO05D008588 1.3e-14 83.6 64 60.9
MBI19_g03256_MAGBIO Magnolia biondii HOM05D006840 ORTHO05D008588 1.3e-14 83.6 60 63.3
MD04G1245900 Malus domestica HOM05D006840 ORTHO05D008588 1.3e-14 83.6 67 58.2
PSO170G0121 Papaver somniferum HOM05D006840 ORTHO05D008588 1.3e-14 83.6 65 60.0
SEGI_35940 Sequoiadendron giganteum HOM05D006840 ORTHO05D008588 1.3e-14 83.6 66 56.1
PSO357G0633 Papaver somniferum HOM05D006840 ORTHO05D008588 1.8e-14 83.2 64 59.4
Sed0002286 Sechium edule HOM05D006840 ORTHO05D008588 1.8e-14 83.2 62 62.9
Lj1g0027213 Lotus japonicus HOM05D006840 ORTHO05D008588 2.3e-14 82.8 60 63.3
Lalb_Chr03g0038681 Lupinus albus HOM05D006840 ORTHO05D008588 2.3e-14 82.8 60 63.3
Sabra13G0078300 Salix brachista HOM05D006840 ORTHO05D008588 2.3e-14 82.8 64 59.4
FAN05G5535 Fragaria x ananassa HOM05D006840 ORTHO05D008588 3.0e-14 82.4 71 56.3
Solyc04g056580.3 Solanum lycopersicum HOM05D006840 ORTHO05D008588 3.0e-14 82.4 57 66.7
Sopen04g025500 Solanum pennellii HOM05D006840 ORTHO05D008588 3.0e-14 82.4 57 66.7
Nitab4.5_0009290g0020 Nicotiana tabacum HOM05D006840 ORTHO05D008588 3.9e-14 82.0 60 61.7
PGSC0003DMG400010521 Solanum tuberosum HOM05D006840 ORTHO05D008588 3.9e-14 82.0 62 61.3
CAN.G642.5 Capsicum annuum HOM05D006840 ORTHO05D008588 6.7e-14 81.3 65 58.5
AUR62006644 Chenopodium quinoa HOM05D006840 ORTHO05D008588 6.7e-14 81.3 71 56.3
FvH4_6g00410 Fragaria vesca HOM05D006840 ORTHO05D008588 6.7e-14 81.3 71 54.9
FAN02G1048 Fragaria x ananassa HOM05D006840 ORTHO05D008588 6.7e-14 81.3 71 54.9
FAN14G4782 Fragaria x ananassa HOM05D006840 ORTHO05D008588 6.7e-14 81.3 71 54.9
Medtr7g080220 Medicago truncatula HOM05D006840 ORTHO05D008588 6.7e-14 81.3 57 68.4
Potri.013G085300 Populus trichocarpa HOM05D006840 ORTHO05D008588 8.7e-14 80.9 64 56.2
Mapoly0031s0189 Marchantia polymorpha HOM05D006840 ORTHO05D008588 1.1e-13 80.5 87 49.4
TPR.G23771 Trifolium pratense HOM05D006840 ORTHO05D008588 1.1e-13 80.5 60 61.7
AUR62000298 Chenopodium quinoa HOM05D006840 ORTHO05D008588 1.5e-13 80.1 61 60.7
Migut.F02113 Erythranthe guttata HOM05D006840 ORTHO05D008588 1.5e-13 80.1 60 61.7
Prupe.6G362300 Prunus persica HOM05D006840 ORTHO05D008588 1.9e-13 79.7 64 56.2
HPP92_000447 Vanilla planifolia HOM05D006840 ORTHO05D008588 1.9e-13 79.7 62 58.1
FAN09G3232 Fragaria x ananassa HOM05D006840 ORTHO05D008588 2.5e-13 79.3 71 53.5
RcHm_v2.0_Chr3g0447741 Rosa chinensis HOM05D006840 ORTHO05D008588 2.5e-13 79.3 61 57.4
Ca_07995_v3 Cicer arietinum L. HOM05D006840 ORTHO05D008588 3.3e-13 79.0 60 63.3
SMO353G0271 Selaginella moellendorffii HOM05D006840 ORTHO05D008588 9.6e-13 77.4 62 58.1
Psat3g102720 Pisum sativum HOM05D006840 ORTHO05D008588 1.3e-12 77.0 60 60.0
AagrBONN_evm.TU.Sc2ySwM_228.2548 Anthoceros agrestis HOM05D006840 ORTHO05D008588 8.2e-12 74.3 76 44.7
Pp3c15_10950 Physcomitrium patens HOM05D006840 ORTHO05D008588 1.4e-11 73.6 72 43.1
Oeu020467.1 Olea europaea HOM05D006840 ORTHO05D008588 2.4e-11 72.8 51 64.7
Pp3c9_3810 Physcomitrium patens HOM05D006840 ORTHO05D008588 6.9e-11 71.2 70 42.9
CSS0032443 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 1.0e-09 67.4 56 57.1
Cpa.g.sc39.39 Carica papaya HOM05D006840 ORTHO05D008588 1.3e-09 67.0 47 63.8
CBR_g8822 Chara braunii HOM05D006840 ORTHO05D008588 5.0e-09 65.1 61 52.5
unitig_22.g5732 Utricularia gibba HOM05D006840 ORTHO05D008588 3.9e-06 55.5 51 51.0
MCO02G353 Micromonas commoda HOM05D006840 ORTHO05D008588 5.1e-06 55.1 45 53.3


User provided reference genes

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