Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb423040 Zea mays HOM05D006686 ORTHO05D008463 3.3e-286 987.6 481 100.0
Os04g0442200 Oryza sativa ssp. japonica HOM05D006686 ORTHO05D008463 7.4e-238 827.0 481 83.6
MBI03_g20875_MAGBIO Magnolia biondii HOM05D006686 ORTHO05D008463 9.5e-177 624.0 462 66.2
CSS0008654 Camellia sinensis var. sinensis HOM05D006686 ORTHO05D008463 1.2e-176 623.6 431 68.4
TAR381G1724 Trochodendron aralioides HOM05D006686 ORTHO05D008463 1.6e-176 623.2 470 64.7
GSVIVG01023154001 Vitis vinifera HOM05D006686 ORTHO05D008463 2.1e-176 622.9 472 64.6
Dinv29673 Davidia involucrata HOM05D006686 ORTHO05D008463 2.3e-175 619.4 471 64.8
Nn5g27352 Nelumbo nucifera HOM05D006686 ORTHO05D008463 3.1e-175 619.0 443 66.8
HanXRQChr01g0013991 Helianthus annuus HOM05D006686 ORTHO05D008463 9.8e-174 614.0 471 64.1
Cfa004450 Carpinus fangiana HOM05D006686 ORTHO05D008463 4.9e-173 611.7 468 64.7
ATR1089G117 Amborella trichopoda HOM05D006686 ORTHO05D008463 6.4e-173 611.3 444 66.7
Gorai.011G003800 Gossypium raimondii HOM05D006686 ORTHO05D008463 6.4e-173 611.3 462 64.5
ECA236G4971 Erigeron canadensis HOM05D006686 ORTHO05D008463 1.9e-172 609.8 474 63.1
Gohir.D10G003400 Gossypium hirsutum HOM05D006686 ORTHO05D008463 2.4e-172 609.4 462 64.3
MD08G1247400 Malus domestica HOM05D006686 ORTHO05D008463 4.1e-172 608.6 474 63.1
Manes.07G028500 Manihot esculenta HOM05D006686 ORTHO05D008463 4.1e-172 608.6 462 64.3
HPP92_005637 Vanilla planifolia HOM05D006686 ORTHO05D008463 4.1e-172 608.6 465 63.4
Gohir.A10G003400 Gossypium hirsutum HOM05D006686 ORTHO05D008463 9.2e-172 607.4 468 63.5
vmacro19835 Vaccinium macrocarpon HOM05D006686 ORTHO05D008463 9.2e-172 607.4 433 66.7
DCAR_022282 Daucus carota HOM05D006686 ORTHO05D008463 1.2e-171 607.1 467 64.0
Migut.B00728 Erythranthe guttata HOM05D006686 ORTHO05D008463 2.1e-171 606.3 451 64.7
Sabra01G0173400 Salix brachista HOM05D006686 ORTHO05D008463 2.1e-171 606.3 462 64.3
FvH4_5g27990 Fragaria vesca HOM05D006686 ORTHO05D008463 2.7e-171 605.9 461 64.9
PSO210G5299 Papaver somniferum HOM05D006686 ORTHO05D008463 3.5e-171 605.5 393 72.5
Prupe.1G584700 Prunus persica HOM05D006686 ORTHO05D008463 7.8e-171 604.4 482 63.5
MELO3C016473.2 Cucumis melo HOM05D006686 ORTHO05D008463 3.9e-170 602.1 449 64.6
Thecc.06G000500 Theobroma cacao HOM05D006686 ORTHO05D008463 3.9e-170 602.1 471 63.5
Lsat_1_v5_gn_7_75180 Lactuca sativa HOM05D006686 ORTHO05D008463 1.1e-169 600.5 434 66.1
ClCG10G007390 Citrullus lanatus HOM05D006686 ORTHO05D008463 1.5e-169 600.1 431 65.2
COL.COLO4_26876 Corchorus olitorius HOM05D006686 ORTHO05D008463 1.5e-169 600.1 480 61.9
Duzib235G0699 Durio zibethinus HOM05D006686 ORTHO05D008463 1.9e-169 599.7 475 63.4
HPP92_005643 Vanilla planifolia HOM05D006686 ORTHO05D008463 1.9e-169 599.7 465 63.2
CANSAT01G1449 Cannabis sativa HOM05D006686 ORTHO05D008463 2.5e-169 599.4 431 66.8
FAN18G1657 Fragaria x ananassa HOM05D006686 ORTHO05D008463 2.5e-169 599.4 466 64.2
FAN04G2541 Fragaria x ananassa HOM05D006686 ORTHO05D008463 3.3e-169 599.0 460 63.5
Potri.004G228500 Populus trichocarpa HOM05D006686 ORTHO05D008463 5.6e-169 598.2 460 63.5
VMungo1215G3175 Vigna mungo HOM05D006686 ORTHO05D008463 5.6e-169 598.2 452 64.6
CsaV3_3G006630 Cucumis sativus L. HOM05D006686 ORTHO05D008463 7.3e-169 597.8 449 63.9
QL02p103152 Quercus lobata HOM05D006686 ORTHO05D008463 7.3e-169 597.8 437 65.9
CDE04G2622 Ceratophyllum demersum HOM05D006686 ORTHO05D008463 1.2e-168 597.0 459 63.0
Nitab4.5_0001129g0010 Nicotiana tabacum HOM05D006686 ORTHO05D008463 3.6e-168 595.5 430 67.0
Glyma.07G273000 Glycine max HOM05D006686 ORTHO05D008463 1.4e-167 593.6 434 66.6
AL4G13300 Arabidopsis lyrata HOM05D006686 ORTHO05D008463 2.3e-167 592.8 450 63.6
Phvul.003G075600 Phaseolus vulgaris HOM05D006686 ORTHO05D008463 3.1e-167 592.4 443 65.2
PGSC0003DMG402024871 Solanum tuberosum HOM05D006686 ORTHO05D008463 3.1e-167 592.4 460 63.5
unitig_22.g6102 Utricularia gibba HOM05D006686 ORTHO05D008463 3.1e-167 592.4 410 67.3
Carub.0004s0259 Capsella rubella HOM05D006686 ORTHO05D008463 6.8e-167 591.3 451 62.7
Nitab4.5_0001057g0120 Nicotiana tabacum HOM05D006686 ORTHO05D008463 1.5e-166 590.1 468 62.8
MSTRG.16472 Avicennia marina HOM05D006686 ORTHO05D008463 2.6e-166 589.3 471 61.4
Sp4g17050 Schrenkiella parvula HOM05D006686 ORTHO05D008463 2.6e-166 589.3 426 64.8
Solyc01g103110.3 Solanum lycopersicum HOM05D006686 ORTHO05D008463 4.4e-166 588.6 460 63.3
Lj4g0021342 Lotus japonicus HOM05D006686 ORTHO05D008463 5.8e-166 588.2 388 70.4
Peaxi162Scf00011g01843 Petunia axillaris HOM05D006686 ORTHO05D008463 5.8e-166 588.2 470 62.1
BcaB01g02944 Brassica carinata HOM05D006686 ORTHO05D008463 1.3e-165 587.0 450 62.7
BcaC01g04848 Brassica carinata HOM05D006686 ORTHO05D008463 1.7e-165 586.6 434 64.1
BolC3t15644H Brassica oleracea HOM05D006686 ORTHO05D008463 1.7e-165 586.6 434 64.1
Sp6g11350 Schrenkiella parvula HOM05D006686 ORTHO05D008463 1.7e-165 586.6 426 64.3
BraA03t11965Z Brassica rapa HOM05D006686 ORTHO05D008463 2.2e-165 586.3 435 64.4
CAN.G855.45 Capsicum annuum HOM05D006686 ORTHO05D008463 2.2e-165 586.3 463 62.6
PGR042G1861 Punica granatum HOM05D006686 ORTHO05D008463 2.2e-165 586.3 446 62.8
Thhalv10013635m.g Eutrema salsugineum HOM05D006686 ORTHO05D008463 2.9e-165 585.9 413 66.1
SGA_v2.0_scaffold254G45251 Striga asiatica HOM05D006686 ORTHO05D008463 4.9e-165 585.1 440 63.6
C03p33220 Brassica napus HOM05D006686 ORTHO05D008463 6.4e-165 584.7 434 64.1
Sopen01g045530 Solanum pennellii HOM05D006686 ORTHO05D008463 6.4e-165 584.7 460 62.6
Ah.03g136810 Amaranthus hybridus HOM05D006686 ORTHO05D008463 8.3e-165 584.3 435 62.8
Cc02_g23500 Coffea canephora HOM05D006686 ORTHO05D008463 1.1e-164 583.9 466 62.2
Eucgr.G00081 Eucalyptus grandis HOM05D006686 ORTHO05D008463 4.1e-164 582.0 478 60.5
AT2G23390 Arabidopsis thaliana HOM05D006686 ORTHO05D008463 5.4e-164 581.6 451 61.6
THA.LOC104809035 Tarenaya hassleriana HOM05D006686 ORTHO05D008463 2.7e-163 579.3 450 62.0
Aa31LG3G6890 Aethionema arabicum HOM05D006686 ORTHO05D008463 7.8e-163 577.8 430 63.0
arahy.Tifrunner.gnm1.ann1.KKPS0T Arachis hypogaea HOM05D006686 ORTHO05D003399 4.3e-161 572.0 389 68.9
arahy.Tifrunner.gnm1.ann1.A5H9W7 Arachis hypogaea HOM05D006686 ORTHO05D008463 1.2e-160 570.5 390 68.7
A03p27520 Brassica napus HOM05D006686 ORTHO05D008463 1.6e-160 570.1 466 60.1
Ca_13532_v3 Cicer arietinum L. HOM05D006686 ORTHO05D008463 1.6e-160 570.1 389 69.7
RcHm_v2.0_Chr7g0220181 Rosa chinensis HOM05D006686 ORTHO05D008463 3.6e-160 568.9 365 72.6
SEGI_40259 Sequoiadendron giganteum HOM05D006686 ORTHO05D008463 6.2e-160 568.2 434 64.3
Lalb_Chr07g0176791 Lupinus albus HOM05D006686 ORTHO05D008463 1.8e-159 566.6 444 62.8
EL10Ac6g14006 Beta vulgaris HOM05D006686 ORTHO05D008463 7.6e-158 561.2 498 56.4
TWI59G1206 Tripterygium wilfordii HOM05D006686 ORTHO05D008463 7.6e-158 561.2 430 63.0
Sed0016336 Sechium edule HOM05D006686 ORTHO05D008463 6.4e-157 558.1 364 70.6
Lj9C281G9 Lonicera japonica HOM05D006686 ORTHO05D008463 1.9e-156 556.6 444 61.5
Psat4g001080 Pisum sativum HOM05D006686 ORTHO05D008463 2.1e-155 553.1 387 66.9
Medtr4g134670 Medicago truncatula HOM05D006686 ORTHO05D008463 1.7e-154 550.1 395 66.3
TPR.G5968 Trifolium pratense HOM05D006686 ORTHO05D008463 5.1e-154 548.5 385 67.5
Cpa.g.sc113.25 Carica papaya HOM05D006686 ORTHO05D008463 1.4e-148 530.4 466 57.5
Mapoly0007s0219 Marchantia polymorpha HOM05D006686 ORTHO05D008463 4.2e-148 528.9 421 60.1
Pp3c21_14930 Physcomitrium patens HOM05D006686 ORTHO05D008463 4.2e-148 528.9 434 59.4
Rhsim05G0116000 Rhododendron simsii HOM05D006686 ORTHO05D008463 6.6e-146 521.5 441 59.9
AagrBONN_evm.TU.Sc2ySwM_362.840 Anthoceros agrestis HOM05D006686 ORTHO05D008463 4.3e-145 518.8 397 61.5
Aqoxy5G01865 Aquilegia oxysepala HOM05D006686 ORTHO05D008463 4.3e-137 492.3 435 56.3
Ciclev10001220m.g Citrus clementina HOM05D006686 ORTHO05D008463 4.3e-137 492.3 472 55.1
CiPaw.06G176300 Carya illinoinensis HOM05D006686 ORTHO05D008463 9.6e-137 491.1 333 69.4
SMO364G0094 Selaginella moellendorffii HOM05D006686 ORTHO05D008463 9.6e-137 491.1 411 58.4
Atru.chr6.339 Acer truncatum HOM05D006686 ORTHO05D008463 3.7e-136 489.2 356 65.2
Sc03g0004960 Simmondsia chinensis HOM05D006686 ORTHO05D008463 5.7e-121 438.7 430 52.6
PSO447G0166 Papaver somniferum HOM05D006686 ORTHO05D008463 1.9e-116 423.7 393 55.2
Cre09.g399626 Chlamydomonas reinhardtii HOM05D006686 ORTHO05D008463 8.0e-99 365.2 461 42.1
Haze_27211 Corylus avellana HOM05D006686 ORTHO05D008463 4.1e-95 352.8 387 45.0
Haze_09995 Corylus avellana HOM05D006686 ORTHO05D008463 5.3e-95 352.4 213 77.0
Actinidia01629 Actinidia chinensis HOM05D006686 ORTHO05D008463 5.9e-94 349.0 288 60.4
PRCOL_00000210 Prasinoderma coloniale HOM05D006686 ORTHO05D008463 4.7e-91 339.3 438 42.9
Glyma.17G001600 Glycine max HOM05D006686 ORTHO05D008463 1.8e-90 337.4 259 66.4
RcHm_v2.0_Chr7g0220471 Rosa chinensis HOM05D006686 ORTHO05D008463 9.1e-79 298.5 228 64.5
FAN08G3117 Fragaria x ananassa HOM05D006686 ORTHO05D008463 6.4e-72 275.8 190 65.8
Oeu000154.1 Olea europaea HOM05D006686 ORTHO05D008463 1.6e-70 271.2 320 47.8
CARHR293020 Cardamine hirsuta HOM05D006686 ORTHO05D008463 2.3e-61 240.7 159 68.6
Eucgr.A00755 Eucalyptus grandis HOM05D006686 ORTHO05D008463 2.4e-55 220.7 161 64.6
AUR62032459 Chenopodium quinoa HOM05D006686 ORTHO05D008463 9.9e-49 198.7 232 44.4
Nitab4.5_0004668g0030 Nicotiana tabacum HOM05D006686 ORTHO05D008463 1.6e-38 164.9 128 60.2
CBR_g48698 Chara braunii HOM05D006686 ORTHO05D008463 6.6e-29 132.9 123 55.3
Haze_09994 Corylus avellana HOM05D006686 ORTHO05D008463 1.1e-28 132.1 257 37.4
Actinidia26190 Actinidia chinensis HOM05D006686 ORTHO05D008463 1.1e-23 115.5 70 71.4
Hund15396 Selenicereus undatus HOM05D006686 ORTHO05D008463 8.7e-21 105.9 78 65.4
MELO3C032221.2 Cucumis melo HOM05D006686 ORTHO05D008463 4.3e-20 103.6 80 65.0
CBR_g48699 Chara braunii HOM05D006686 ORTHO05D008463 2.6e-17 94.4 79 50.6
Haze_05751 Corylus avellana HOM05D006686 ORTHO05D008463 7.6e-17 92.8 88 53.4
CiPaw.06G176500 Carya illinoinensis HOM05D006686 ORTHO05D008463 1.1e-15 89.0 97 49.5
Peaxi162Scf00011g01844 Petunia axillaris HOM05D006686 ORTHO05D008463 1.6e-14 85.1 135 40.7


User provided reference genes

Program Settings