Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 3.3e-200 701.4 341 100.0
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 2.0e-160 569.3 346 83.2
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 9.5e-139 497.3 347 70.0
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 5.2e-137 491.5 347 68.9
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.3e-132 476.9 345 68.7
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 6.6e-132 474.6 343 68.8
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 3.3e-131 472.2 340 66.8
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 4.3e-131 471.9 346 66.8
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 2.8e-130 469.2 345 67.5
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 6.2e-130 468.0 343 66.2
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 6.2e-130 468.0 340 66.8
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 1.1e-129 467.2 343 66.8
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 1.4e-129 466.8 345 64.9
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 1.4e-129 466.8 344 66.9
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 2.3e-129 466.1 339 66.7
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 4.0e-129 465.3 343 65.9
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 5.2e-129 464.9 342 64.9
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 5.2e-129 464.9 346 65.3
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 8.9e-129 464.2 344 66.0
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 8.9e-129 464.2 343 66.2
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 8.9e-129 464.2 328 67.7
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 1.5e-128 463.4 348 64.9
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 1.5e-128 463.4 348 67.0
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 2.0e-128 463.0 340 65.9
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 2.0e-128 463.0 349 66.8
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 5.8e-128 461.5 337 67.1
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 5.8e-128 461.5 337 66.8
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 7.6e-128 461.1 349 65.3
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 9.9e-128 460.7 344 65.4
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 2.9e-127 459.1 348 64.9
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 3.7e-127 458.8 343 65.3
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 4.9e-127 458.4 340 66.5
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 4.9e-127 458.4 344 65.1
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 1.4e-126 456.8 333 67.6
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 1.4e-126 456.8 342 66.4
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 1.4e-126 456.8 347 64.6
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 1.9e-126 456.4 336 67.9
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 1.9e-126 456.4 346 64.5
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.9e-126 456.4 344 64.8
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 2.4e-126 456.1 338 65.4
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 2.4e-126 456.1 344 64.8
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 4.1e-126 455.3 345 64.3
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 5.4e-126 454.9 344 64.0
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 7.1e-126 454.5 347 64.8
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 9.2e-126 454.1 345 63.2
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 9.2e-126 454.1 343 65.3
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 1.6e-125 453.4 331 67.4
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 1.6e-125 453.4 331 67.4
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 2.1e-125 453.0 327 67.9
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 2.7e-125 452.6 346 64.2
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 3.5e-125 452.2 331 67.4
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 6.0e-125 451.4 334 65.9
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 6.0e-125 451.4 342 65.5
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 1.0e-124 450.7 342 64.6
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.0e-124 450.7 375 60.3
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 1.3e-124 450.3 338 67.5
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 1.3e-124 450.3 350 66.0
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 5.1e-124 448.4 348 65.2
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 1.1e-123 447.2 349 61.9
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 1.1e-123 447.2 349 61.9
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 1.1e-123 447.2 375 60.0
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 1.5e-123 446.8 345 62.9
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 2.5e-123 446.0 341 66.0
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 2.5e-123 446.0 350 64.0
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 3.3e-123 445.7 347 63.1
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 4.3e-123 445.3 345 62.9
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 1.2e-122 443.7 350 63.4
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.2e-122 443.7 345 62.3
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 1.6e-122 443.4 345 62.0
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 1.6e-122 443.4 327 65.7
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 2.1e-122 443.0 341 65.4
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 4.7e-122 441.8 338 63.6
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 6.2e-122 441.4 345 62.3
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 1.1e-121 440.7 341 63.9
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 1.1e-121 440.7 348 64.7
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.4e-121 440.3 345 62.0
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 1.8e-121 439.9 337 63.5
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 3.1e-121 439.1 343 61.2
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 3.1e-121 439.1 347 62.2
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 4.0e-121 438.7 337 63.2
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 1.5e-120 436.8 360 60.6
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 3.4e-120 435.6 407 55.8
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 4.4e-120 435.3 337 62.3
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 1.7e-119 433.3 334 62.6
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 2.2e-119 433.0 349 62.2
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 3.8e-119 432.2 347 62.8
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 4.9e-119 431.8 320 66.2
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 8.4e-119 431.0 348 60.9
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 1.2e-117 427.2 341 62.8
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 1.6e-117 426.8 320 64.7
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 3.5e-117 425.6 298 68.8
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 7.8e-117 424.5 341 61.9
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 7.8e-117 424.5 341 63.0
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 2.3e-116 422.9 332 61.4
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 5.1e-116 421.8 290 68.6
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 1.1e-115 420.6 336 62.8
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 7.3e-115 417.9 321 62.6
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 7.3e-115 417.9 351 61.5
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 1.2e-112 410.6 279 69.5
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 9.3e-110 401.0 329 60.2
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 1.7e-108 396.7 244 73.0
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 9.6e-107 391.0 340 60.0
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 2.1e-106 389.8 244 71.7
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 9.0e-105 384.4 321 60.4
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 5.8e-104 381.7 246 71.1
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 6.4e-103 378.3 298 61.7
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 1.4e-102 377.1 232 73.7
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 1.8e-100 370.2 333 56.8
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 1.3e-95 354.0 329 55.9
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 3.3e-91 339.3 321 56.7
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 1.0e-87 327.8 252 66.3
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 2.2e-87 326.6 332 53.6
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 3.8e-87 325.9 232 67.2
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 3.9e-84 315.8 243 61.7
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 5.0e-79 298.9 241 63.5
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 1.1e-78 297.7 235 65.5
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 2.4e-73 280.0 238 63.0
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.4e-70 270.8 241 57.7
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.9e-70 270.4 241 57.7
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 1.8e-68 263.8 173 72.8
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 1.8e-60 237.3 350 41.1
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 1.0e-55 221.5 165 63.0
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 1.9e-54 217.2 200 56.5
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 5.5e-54 215.7 199 56.8
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 7.5e-51 205.3 180 57.8
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 2.2e-50 203.8 203 50.7
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 4.2e-46 189.5 160 61.9
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 1.1e-25 121.7 79 69.6
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 1.4e-25 121.3 73 76.7
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 2.2e-18 97.4 56 71.4
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 7.6e-11 72.4 92 44.6


User provided reference genes

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