Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 9.9e-149 530.0 254 100.0
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 9.9e-149 530.0 254 100.0
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 6.4e-148 527.3 254 99.6
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 1.7e-145 519.2 254 98.8
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 1.7e-137 492.7 254 92.9
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 2.6e-109 399.1 256 73.8
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 2.2e-108 396.0 259 74.1
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 2.7e-106 389.0 254 72.0
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 3.5e-106 388.7 258 72.1
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 4.6e-106 388.3 261 72.0
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 1.0e-105 387.1 254 71.7
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 3.0e-105 385.6 255 71.0
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 5.1e-105 384.8 260 70.4
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 5.1e-105 384.8 260 70.4
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 5.1e-105 384.8 259 70.7
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 6.7e-105 384.4 255 72.2
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 8.7e-105 384.0 257 72.0
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 8.7e-105 384.0 259 70.7
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.1e-104 383.6 255 73.7
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 1.5e-104 383.3 260 71.9
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 1.9e-104 382.9 259 72.2
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 2.5e-104 382.5 255 71.8
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 2.5e-104 382.5 257 71.6
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 2.5e-104 382.5 260 71.5
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 3.3e-104 382.1 255 71.4
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 3.3e-104 382.1 257 72.0
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 4.3e-104 381.7 255 71.8
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 4.3e-104 381.7 257 70.4
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 7.4e-104 380.9 257 71.2
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 7.4e-104 380.9 257 71.2
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 7.4e-104 380.9 261 70.1
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 7.4e-104 380.9 259 69.5
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 9.7e-104 380.6 260 71.2
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 9.7e-104 380.6 257 71.2
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 9.7e-104 380.6 255 71.4
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 1.3e-103 380.2 257 70.4
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 1.3e-103 380.2 256 70.3
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 1.6e-103 379.8 258 69.4
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 1.6e-103 379.8 259 72.6
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 1.6e-103 379.8 259 72.6
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 1.6e-103 379.8 255 72.2
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 1.6e-103 379.8 255 71.0
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 1.6e-103 379.8 255 71.8
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 2.2e-103 379.4 260 70.8
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 2.2e-103 379.4 260 71.2
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 3.7e-103 378.6 261 69.7
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 4.8e-103 378.3 255 69.4
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 6.3e-103 377.9 258 69.8
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 6.3e-103 377.9 260 70.8
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 6.3e-103 377.9 260 70.8
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 6.3e-103 377.9 257 69.3
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 6.3e-103 377.9 259 69.1
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 8.2e-103 377.5 259 70.3
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 8.2e-103 377.5 259 69.5
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.1e-102 377.1 257 69.6
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 1.4e-102 376.7 260 70.8
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 1.4e-102 376.7 260 70.4
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 1.4e-102 376.7 259 70.7
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 1.4e-102 376.7 255 71.4
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 1.4e-102 376.7 257 70.0
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 1.4e-102 376.7 257 70.0
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 1.8e-102 376.3 255 69.4
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 1.8e-102 376.3 255 69.8
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 2.4e-102 375.9 255 70.2
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 3.1e-102 375.6 255 70.2
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 3.1e-102 375.6 255 71.4
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 4.1e-102 375.2 259 68.7
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 4.1e-102 375.2 255 69.4
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 4.1e-102 375.2 258 69.8
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 4.1e-102 375.2 255 69.4
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 5.3e-102 374.8 255 69.4
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 9.0e-102 374.0 256 70.7
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 9.0e-102 374.0 260 70.0
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 9.0e-102 374.0 255 69.0
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 9.0e-102 374.0 258 69.8
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 9.0e-102 374.0 260 70.4
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 1.2e-101 373.6 260 70.0
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 1.2e-101 373.6 257 69.6
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 1.2e-101 373.6 257 69.6
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 2.0e-101 372.9 257 70.0
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 2.6e-101 372.5 258 67.4
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 3.4e-101 372.1 256 70.3
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 4.5e-101 371.7 258 69.4
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 4.5e-101 371.7 260 69.6
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 4.5e-101 371.7 260 70.0
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 5.9e-101 371.3 259 69.1
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 7.7e-101 370.9 260 69.6
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 1.0e-100 370.5 257 69.6
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 1.3e-100 370.2 258 68.6
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 1.7e-100 369.8 258 69.0
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 3.8e-100 368.6 273 65.9
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 8.5e-100 367.5 258 69.0
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 1.4e-99 366.7 256 67.6
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 2.5e-99 365.9 259 68.0
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 4.2e-99 365.2 262 67.6
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 4.2e-99 365.2 255 69.0
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 7.2e-99 364.4 260 68.1
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 9.4e-99 364.0 258 66.7
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 1.2e-98 363.6 258 67.4
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 2.1e-98 362.8 257 67.7
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 2.7e-98 362.5 254 68.9
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 4.6e-98 361.7 258 68.2
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 1.0e-97 360.5 254 67.3
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 1.8e-97 359.8 258 67.4
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 2.3e-97 359.4 258 67.1
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 2.3e-97 359.4 258 67.1
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 3.0e-97 359.0 258 67.1
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 1.1e-96 357.1 258 67.4
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 1.1e-96 357.1 258 66.7
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 1.1e-96 357.1 259 66.8
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 1.5e-96 356.7 257 66.9
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 2.0e-96 356.3 260 66.2
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 5.7e-96 354.8 255 65.9
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 5.7e-96 354.8 258 65.9
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 2.8e-95 352.4 257 68.1
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 1.2e-93 347.1 254 66.5
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 2.6e-93 345.9 261 66.3
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 7.9e-90 334.3 260 65.4
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 1.4e-89 333.6 260 61.9
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 5.1e-89 331.6 258 64.7
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 2.0e-88 329.7 259 64.9
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 1.8e-86 323.2 256 61.7
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 5.3e-86 321.6 254 63.8
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 9.1e-86 320.9 259 63.3
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 2.2e-84 316.2 256 59.4
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 5.0e-84 315.1 259 59.8
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 1.9e-83 313.2 255 58.4
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 5.7e-80 301.6 268 56.0
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 2.2e-79 299.7 254 56.3
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 8.2e-79 297.7 258 60.1
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 1.4e-73 280.4 173 75.7
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 7.5e-72 274.6 300 49.3
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 1.4e-70 270.4 245 56.7
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 4.5e-69 265.4 201 65.2
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 1.4e-41 174.1 272 34.6
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.6e-29 134.0 78 82.1
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 4.7e-26 122.5 86 68.6
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 6.0e-21 105.5 93 58.1
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 9.9e-08 61.6 56 53.6
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 2.4e-06 57.0 69 43.5


User provided reference genes

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