Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 6.1e-161 571.2 402 100.0
Zm00001eb085220 Zea mays HOM05D004645 ORTHO05D005693 2.0e-50 204.1 307 57.3
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 6.1e-28 129.4 133 54.1
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 7.5e-26 122.5 134 53.0
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 2.5e-21 107.5 130 43.8
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 3.3e-21 107.1 155 39.4
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 7.3e-21 105.9 130 41.5
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 9.5e-21 105.5 128 41.4
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 9.5e-21 105.5 139 40.3
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 2.1e-20 104.4 128 41.4
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 2.1e-20 104.4 128 41.4
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 2.1e-20 104.4 126 42.1
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 2.8e-20 104.0 136 39.7
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 2.8e-20 104.0 128 40.6
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 3.6e-20 103.6 132 40.2
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 4.7e-20 103.2 132 40.2
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 4.7e-20 103.2 132 40.2
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 4.7e-20 103.2 130 40.8
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 4.7e-20 103.2 124 44.4
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 4.7e-20 103.2 126 41.3
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 4.7e-20 103.2 130 39.2
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 6.2e-20 102.8 128 40.6
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 6.2e-20 102.8 126 41.3
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 6.2e-20 102.8 126 41.3
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 6.2e-20 102.8 126 41.3
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 8.0e-20 102.4 128 40.6
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 1.1e-19 102.1 130 40.8
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 1.1e-19 102.1 130 40.8
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.1e-19 102.1 130 39.2
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 1.4e-19 101.7 130 40.0
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 1.4e-19 101.7 148 37.8
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 1.4e-19 101.7 130 40.8
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 1.8e-19 101.3 128 40.6
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 1.8e-19 101.3 130 40.0
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 1.8e-19 101.3 121 42.1
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 1.8e-19 101.3 128 39.1
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 1.8e-19 101.3 127 40.9
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 1.8e-19 101.3 132 40.2
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 1.8e-19 101.3 123 41.5
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 1.8e-19 101.3 130 40.0
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 1.8e-19 101.3 132 39.4
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 1.8e-19 101.3 132 39.4
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 1.8e-19 101.3 130 40.0
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 1.8e-19 101.3 129 41.1
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 1.8e-19 101.3 129 41.1
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 2.3e-19 100.9 132 37.9
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 2.3e-19 100.9 130 39.2
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 2.3e-19 100.9 132 38.6
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 2.3e-19 100.9 132 38.6
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 3.1e-19 100.5 125 42.4
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 3.1e-19 100.5 132 38.6
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 3.1e-19 100.5 128 39.8
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 3.1e-19 100.5 128 39.1
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 4.0e-19 100.1 136 40.4
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 4.0e-19 100.1 130 39.2
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 4.0e-19 100.1 130 39.2
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 4.0e-19 100.1 131 37.4
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 5.2e-19 99.8 130 39.2
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 5.2e-19 99.8 130 39.2
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 5.2e-19 99.8 130 39.2
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 5.2e-19 99.8 130 39.2
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 5.2e-19 99.8 130 39.2
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 5.2e-19 99.8 132 37.1
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 5.2e-19 99.8 130 39.2
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 5.2e-19 99.8 139 41.0
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 5.2e-19 99.8 131 41.2
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 6.8e-19 99.4 125 40.0
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 6.8e-19 99.4 130 39.2
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 6.8e-19 99.4 132 38.6
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 8.9e-19 99.0 130 39.2
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 8.9e-19 99.0 130 39.2
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 1.2e-18 98.6 147 35.4
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 1.2e-18 98.6 130 39.2
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.2e-18 98.6 132 39.4
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 1.2e-18 98.6 127 40.2
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 1.2e-18 98.6 126 40.5
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 1.2e-18 98.6 130 38.5
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.2e-18 98.6 128 38.3
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 1.5e-18 98.2 131 38.2
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 1.5e-18 98.2 131 38.2
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 1.5e-18 98.2 119 41.2
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 1.5e-18 98.2 125 41.6
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 2.0e-18 97.8 141 37.6
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 2.0e-18 97.8 156 36.5
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 2.0e-18 97.8 130 38.5
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 2.0e-18 97.8 128 38.3
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 2.6e-18 97.4 130 37.7
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 2.6e-18 97.4 130 38.5
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 2.6e-18 97.4 132 39.4
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 2.6e-18 97.4 130 38.5
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 2.6e-18 97.4 132 39.4
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 2.6e-18 97.4 129 40.3
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 2.6e-18 97.4 126 40.5
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 2.6e-18 97.4 127 38.6
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 3.4e-18 97.1 125 40.8
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 3.4e-18 97.1 132 38.6
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 4.4e-18 96.7 131 37.4
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 5.8e-18 96.3 128 37.5
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 5.8e-18 96.3 119 41.2
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 5.8e-18 96.3 130 38.5
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 7.5e-18 95.9 129 38.0
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 7.5e-18 95.9 130 37.7
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 1.3e-17 95.1 125 40.0
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 1.7e-17 94.7 123 37.4
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 2.2e-17 94.4 128 38.3
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 2.2e-17 94.4 129 39.5
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 8.3e-17 92.4 121 39.7
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 1.1e-16 92.0 130 36.9
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 1.1e-16 92.0 109 42.2
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 2.4e-16 90.9 113 40.7
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 3.2e-16 90.5 131 35.1
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 3.2e-16 90.5 150 34.7
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.2e-15 88.6 120 40.0
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 1.2e-15 88.6 120 38.3
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 3.5e-15 87.0 126 38.9
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 7.8e-15 85.9 127 38.6
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.0e-14 85.5 126 38.9
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 1.7e-14 84.7 126 38.9
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 5.0e-14 83.2 130 34.6
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 5.6e-13 79.7 135 35.6
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 1.6e-12 78.2 127 35.4
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 3.6e-12 77.0 201 28.4
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 1.1e-11 75.5 170 29.4
Os04g0392300 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 3.4e-10 70.5 133 38.3
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 1.3e-09 68.6 151 32.5
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 2.2e-09 67.8 155 27.7
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 3.7e-09 67.0 116 33.6
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 1.1e-08 65.5 100 39.0
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 1.4e-08 65.1 103 35.0
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.9e-08 64.7 101 35.6
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 1.9e-08 64.7 71 45.1
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 7.1e-08 62.8 101 34.7
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 9.2e-08 62.4 100 34.0
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 1.6e-07 61.6 98 35.7
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 2.1e-07 61.2 100 34.0


User provided reference genes

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