Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb421190 Zea mays HOM05D000055 ORTHO05D001675 1.1e-150 536.6 269 100.0
Zm00001eb012000 Zea mays HOM05D000055 ORTHO05D001675 5.1e-111 404.8 267 80.1
Zm00001eb397860 Zea mays HOM05D000055 ORTHO05D001675 2.2e-98 362.8 247 78.9
Zm00001eb348970 Zea mays HOM05D000055 ORTHO05D001675 1.8e-92 343.2 241 76.3
Os03g0268200 Oryza sativa ssp. japonica HOM05D000055 ORTHO05D001675 2.4e-68 263.1 247 60.3
Lj2A87G48 Lonicera japonica HOM05D000055 ORTHO05D001675 2.0e-22 110.5 262 34.0
MBI14_g09004_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D001675 2.0e-22 110.5 247 36.0
DCAR_028772 Daucus carota HOM05D000055 ORTHO05D001675 6.4e-21 105.5 253 34.0
Aqoxy1G00820 Aquilegia oxysepala HOM05D000055 ORTHO05D001675 5.4e-20 102.4 247 36.0
Dinv35551 Davidia involucrata HOM05D000055 ORTHO05D001675 1.6e-19 100.9 249 34.9
Actinidia13825 Actinidia chinensis HOM05D000055 ORTHO05D001675 7.8e-19 98.6 248 34.3
Dinv37130 Davidia involucrata HOM05D000055 ORTHO05D001675 1.7e-18 97.4 252 34.5
ATR0559G304 Amborella trichopoda HOM05D000055 ORTHO05D001675 2.3e-18 97.1 124 47.6
TAR369G0359 Trochodendron aralioides HOM05D000055 ORTHO05D001675 2.3e-18 97.1 247 34.8
Lj3g0009590 Lotus japonicus HOM05D000055 ORTHO05D001675 3.9e-18 96.3 252 36.1
HPP92_019229 Vanilla planifolia HOM05D000055 ORTHO05D001675 6.6e-18 95.5 129 45.0
TAR623G1189 Trochodendron aralioides HOM05D000055 ORTHO05D001675 3.3e-17 93.2 249 34.1
GSVIVG01034089001 Vitis vinifera HOM05D000055 ORTHO05D001675 3.3e-17 93.2 252 36.1
Nn2g11263 Nelumbo nucifera HOM05D000055 ORTHO05D001675 2.1e-16 90.5 254 34.6
TPR.G32523 Trifolium pratense HOM05D000055 ORTHO05D001675 2.1e-16 90.5 249 35.3
Manes.09G096800 Manihot esculenta HOM05D000055 ORTHO05D001675 3.6e-16 89.7 251 33.9
CSS0042370 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D001675 1.1e-15 88.2 249 33.3
AT2G37840 Arabidopsis thaliana HOM05D000055 ORTHO05D001675 1.8e-15 87.4 255 34.1
Ca_20657_v3 Cicer arietinum L. HOM05D000055 ORTHO05D001675 1.8e-15 87.4 250 34.0
GSVIVG01010436001 Vitis vinifera HOM05D000055 ORTHO05D001675 1.8e-15 87.4 249 34.9
Lsat_1_v5_gn_8_84601 Lactuca sativa HOM05D000055 ORTHO05D001675 3.1e-15 86.7 253 33.2
vmacro20188 Vaccinium macrocarpon HOM05D000055 ORTHO05D001675 4.0e-15 86.3 254 31.5
Rhsim05G0196900 Rhododendron simsii HOM05D000055 ORTHO05D001675 5.2e-15 85.9 286 30.1
Atru.chr8.2076 Acer truncatum HOM05D000055 ORTHO05D001675 8.9e-15 85.1 245 31.8
Sabra16G0104000 Salix brachista HOM05D000055 ORTHO05D001675 8.9e-15 85.1 256 32.4
Aa31sc88G40 Aethionema arabicum HOM05D000055 ORTHO05D001675 1.2e-14 84.7 253 32.4
Ciclev10011177m.g Citrus clementina HOM05D000055 ORTHO05D001675 1.2e-14 84.7 249 32.5
Gohir.D04G125000 Gossypium hirsutum HOM05D000055 ORTHO05D001675 1.2e-14 84.7 253 34.0
Gohir.A04G085400 Gossypium hirsutum HOM05D000055 ORTHO05D001675 1.5e-14 84.3 253 33.6
Haze_20868 Corylus avellana HOM05D000055 ORTHO05D001675 2.6e-14 83.6 132 43.2
Glyma.03G069800 Glycine max HOM05D000055 ORTHO05D001675 2.6e-14 83.6 254 33.1
Gorai.012G108100 Gossypium raimondii HOM05D000055 ORTHO05D001675 3.4e-14 83.2 253 33.6
MD04G1136900 Malus domestica HOM05D000055 ORTHO05D001675 3.4e-14 83.2 247 33.2
GSVIVG01003801001 Vitis vinifera HOM05D000055 ORTHO05D001675 3.4e-14 83.2 137 43.1
arahy.Tifrunner.gnm1.ann1.QJW061 Arachis hypogaea HOM05D000055 ORTHO05D001675 4.4e-14 82.8 249 34.5
Oeu001845.1 Olea europaea HOM05D000055 ORTHO05D001675 4.4e-14 82.8 248 31.5
Cc06_g02180 Coffea canephora HOM05D000055 ORTHO05D001675 5.8e-14 82.4 248 33.9
HanXRQChr06g0177391 Helianthus annuus HOM05D000055 ORTHO05D001675 5.8e-14 82.4 248 32.3
CDE04G2119 Ceratophyllum demersum HOM05D000055 ORTHO05D001675 7.5e-14 82.0 122 45.1
Glyma.01G099600 Glycine max HOM05D000055 ORTHO05D001675 7.5e-14 82.0 251 32.7
ECA236G0327 Erigeron canadensis HOM05D000055 ORTHO05D001675 9.8e-14 81.6 249 33.7
THA.LOC104823411 Tarenaya hassleriana HOM05D000055 ORTHO05D001675 9.8e-14 81.6 267 31.8
Thecc.05G031200 Theobroma cacao HOM05D000055 ORTHO05D001675 1.3e-13 81.3 253 32.4
Migut.J00278 Erythranthe guttata HOM05D000055 ORTHO05D001675 1.7e-13 80.9 263 31.6
Nitab4.5_0000362g0050 Nicotiana tabacum HOM05D000055 ORTHO05D001675 2.9e-13 80.1 251 29.9
Oeu053775.1 Olea europaea HOM05D000055 ORTHO05D001675 2.9e-13 80.1 145 40.7
PSO339G0089 Papaver somniferum HOM05D000055 ORTHO05D001675 2.9e-13 80.1 145 41.4
Potri.016G104900 Populus trichocarpa HOM05D000055 ORTHO05D001675 2.9e-13 80.1 250 30.8
Sc01g0004700 Simmondsia chinensis HOM05D000055 ORTHO05D001675 2.9e-13 80.1 249 31.3
Nn2g13503 Nelumbo nucifera HOM05D000055 ORTHO05D001675 3.7e-13 79.7 255 31.4
PSO513G0088 Papaver somniferum HOM05D000055 ORTHO05D001675 3.7e-13 79.7 145 42.1
Rhsim04G0162700 Rhododendron simsii HOM05D000055 ORTHO05D001675 3.7e-13 79.7 250 30.0
AL5G34910 Arabidopsis lyrata HOM05D000055 ORTHO05D001675 4.9e-13 79.3 254 32.7
BraA04t16280Z Brassica rapa HOM05D000055 ORTHO05D001675 8.3e-13 78.6 252 31.0
A04p05830 Brassica napus HOM05D000055 ORTHO05D001675 1.1e-12 78.2 258 31.0
Carub.0005s2050 Capsella rubella HOM05D000055 ORTHO05D001675 1.4e-12 77.8 254 32.3
CsaV3_3G034550 Cucumis sativus L. HOM05D000055 ORTHO05D001675 1.4e-12 77.8 252 30.6
COL.COLO4_14715 Corchorus olitorius HOM05D000055 ORTHO05D001675 1.9e-12 77.4 122 43.4
HanXRQChr04g0124561 Helianthus annuus HOM05D000055 ORTHO05D001675 1.9e-12 77.4 140 42.1
Psat7g241920 Pisum sativum HOM05D000055 ORTHO05D001675 1.9e-12 77.4 250 35.2
BcaC02g09123 Brassica carinata HOM05D000055 ORTHO05D001675 5.4e-12 75.9 256 31.6
C04p38670 Brassica napus HOM05D000055 ORTHO05D001675 5.4e-12 75.9 256 31.6
BolC4t25445H Brassica oleracea HOM05D000055 ORTHO05D001675 5.4e-12 75.9 256 31.6
CANSAT35G1498 Cannabis sativa HOM05D000055 ORTHO05D001675 5.4e-12 75.9 258 30.2
QL07p028568 Quercus lobata HOM05D000055 ORTHO05D001675 5.4e-12 75.9 253 32.8
VMungo0331G1445 Vigna mungo HOM05D000055 ORTHO05D001675 5.4e-12 75.9 250 32.4
Potri.006G092900 Populus trichocarpa HOM05D000055 ORTHO05D001675 9.2e-12 75.1 252 31.0
BcaB02g08501 Brassica carinata HOM05D000055 ORTHO05D001675 1.2e-11 74.7 251 29.9
Nitab4.5_0006535g0020 Nicotiana tabacum HOM05D000038 ORTHO05D001675 1.6e-11 74.3 126 38.9
Lsat_1_v5_gn_5_172361 Lactuca sativa HOM05D000055 ORTHO05D001675 2.0e-11 73.9 136 39.0
Sed0006565 Sechium edule HOM05D000055 ORTHO05D001675 2.0e-11 73.9 251 29.9
FAN02G1079 Fragaria x ananassa HOM05D000055 ORTHO05D001675 2.7e-11 73.6 260 31.2
Prupe.6G262900 Prunus persica HOM05D000055 ORTHO05D001675 2.7e-11 73.6 248 29.4
RcHm_v2.0_Chr3g0465041 Rosa chinensis HOM05D000055 ORTHO05D001675 3.5e-11 73.2 254 29.1
ClCG10G021490 Citrullus lanatus HOM05D000055 ORTHO05D001675 4.6e-11 72.8 250 31.2
Sp5g08470 Schrenkiella parvula HOM05D000055 ORTHO05D001675 4.6e-11 72.8 257 30.7
AT3G53930 Arabidopsis thaliana HOM05D000055 ORTHO05D001675 6.0e-11 72.4 254 31.9
Lalb_Chr07g0193101 Lupinus albus HOM05D000055 ORTHO05D001675 1.0e-10 71.6 251 31.9
A03p20890 Brassica napus HOM05D000055 ORTHO05D001675 1.3e-10 71.2 254 31.9
CARHR163820 Cardamine hirsuta HOM05D000055 ORTHO05D001675 1.3e-10 71.2 254 31.1
PSO384G0871 Papaver somniferum HOM05D000055 ORTHO05D001675 1.3e-10 71.2 252 34.5
FvH4_6g12940 Fragaria vesca HOM05D000055 ORTHO05D001675 1.7e-10 70.9 256 31.6
FAN14G4822 Fragaria x ananassa HOM05D000055 ORTHO05D001675 1.7e-10 70.9 263 30.4
AL4G34790 Arabidopsis lyrata HOM05D000055 ORTHO05D001675 2.3e-10 70.5 255 31.8
Carub.0004s1976 Capsella rubella HOM05D000055 ORTHO05D001675 2.3e-10 70.5 250 30.4
PSO339G1793 Papaver somniferum HOM05D000055 ORTHO05D001675 2.3e-10 70.5 252 35.3
Thhalv10010160m.g Eutrema salsugineum HOM05D000055 ORTHO05D001675 3.0e-10 70.1 257 30.7
Medtr4g019410 Medicago truncatula HOM05D000055 ORTHO05D001675 3.0e-10 70.1 250 32.4
PGSC0003DMG400008887 Solanum tuberosum HOM05D000055 ORTHO05D001675 3.0e-10 70.1 252 29.4
AUR62025776 Chenopodium quinoa HOM05D000055 ORTHO05D001675 3.9e-10 69.7 253 30.0
Gorai.001G247200 Gossypium raimondii HOM05D000055 ORTHO05D001675 3.9e-10 69.7 250 30.4
TWI53G0243 Tripterygium wilfordii HOM05D000055 ORTHO05D001675 3.9e-10 69.7 131 39.7
EL10Ac5g11559 Beta vulgaris HOM05D000055 ORTHO05D001675 6.6e-10 68.9 252 31.3
AUR62043662 Chenopodium quinoa HOM05D000055 ORTHO05D001675 6.6e-10 68.9 249 30.1
Gohir.D13G095000 Gossypium hirsutum HOM05D000055 ORTHO05D001675 8.6e-10 68.6 252 30.6
Sed0012814 Sechium edule HOM05D000055 ORTHO05D001675 1.1e-09 68.2 252 28.2
Gohir.A13G099000 Gossypium hirsutum HOM05D000055 ORTHO05D001675 1.5e-09 67.8 250 29.6
MD12G1151100 Malus domestica HOM05D000055 ORTHO05D001675 1.5e-09 67.8 251 31.1
SalBow4G0517 Salvia bowleyana HOM05D000055 ORTHO05D001675 1.5e-09 67.8 259 30.1
BcaB01g03749 Brassica carinata HOM05D000055 ORTHO05D001675 1.9e-09 67.4 248 28.2
CiPaw.09G199700 Carya illinoinensis HOM05D000055 ORTHO05D001675 2.5e-09 67.0 251 30.7
FAN05G3613 Fragaria x ananassa HOM05D000055 ORTHO05D001675 2.5e-09 67.0 256 31.2
FAN09G1756 Fragaria x ananassa HOM05D000055 ORTHO05D001675 2.5e-09 67.0 256 31.2
TWI77G0832 Tripterygium wilfordii HOM05D000055 ORTHO05D001675 2.5e-09 67.0 127 37.8
PGR004G0083 Punica granatum HOM05D000055 ORTHO05D001675 3.3e-09 66.6 252 29.8
PGR107G0004 Punica granatum HOM05D000055 ORTHO05D001675 3.3e-09 66.6 252 29.8
Sopen09g006040 Solanum pennellii HOM05D000055 ORTHO05D001675 3.3e-09 66.6 250 30.0
BcaC01g05589 Brassica carinata HOM05D000055 ORTHO05D001675 7.3e-09 65.5 127 41.7
C03p24540 Brassica napus HOM05D000055 ORTHO05D001675 7.3e-09 65.5 127 41.7
BolC3t14852H Brassica oleracea HOM05D000055 ORTHO05D001675 7.3e-09 65.5 127 41.7
Lalb_Chr12g0209491 Lupinus albus HOM05D000055 ORTHO05D001675 7.3e-09 65.5 251 32.3
Solyc09g011320.3 Solanum lycopersicum HOM05D000055 ORTHO05D001675 7.3e-09 65.5 250 30.4
BraA03t11329Z Brassica rapa HOM05D000055 ORTHO05D001675 2.1e-08 63.9 127 40.9
vmacro08632 Vaccinium macrocarpon HOM05D000055 ORTHO05D001675 2.1e-08 63.9 248 28.6
unitig_8.g4425 Utricularia gibba HOM05D000055 ORTHO05D001675 2.8e-08 63.5 127 34.6
SGA_v2.0_scaffold75G24971 Striga asiatica HOM05D000055 ORTHO05D001675 3.6e-08 63.2 142 37.3
DCAR_012134 Daucus carota HOM05D000055 ORTHO05D001675 4.7e-08 62.8 258 28.3
Sabra06G0070600 Salix brachista HOM05D000055 ORTHO05D001675 4.7e-08 62.8 245 27.8
Duzib128G0746 Durio zibethinus HOM05D000055 ORTHO05D001675 1.4e-07 61.2 248 27.8
Oeu013147.1 Olea europaea HOM05D000055 ORTHO05D001675 1.8e-07 60.8 246 28.9
SEGI_24002 Sequoiadendron giganteum HOM05D000055 ORTHO05D001675 1.8e-07 60.8 127 39.4
Lsat_1_v5_gn_9_82681 Lactuca sativa HOM05D000055 ORTHO05D001675 2.3e-07 60.5 120 36.7
Peaxi162Scf00318g00323 Petunia axillaris HOM05D000055 ORTHO05D001675 5.2e-07 59.3 130 38.5
CDE03G0126 Ceratophyllum demersum HOM05D000055 ORTHO05D001675 6.8e-07 58.9 124 36.3
Ah.02g115410 Amaranthus hybridus HOM05D000055 ORTHO05D001675 1.2e-06 58.2 124 36.3
AL8G13400 Arabidopsis lyrata HOM05D001368 ORTHO05D001675 1.2e-06 58.2 124 35.5
Cfa017311 Carpinus fangiana HOM05D000055 ORTHO05D001675 2.0e-06 57.4 104 37.5
Migut.L01969 Erythranthe guttata HOM05D000055 ORTHO05D001675 2.0e-06 57.4 138 30.4
Cpa.g.sc56.42 Carica papaya HOM05D000055 ORTHO05D001675 5.8e-06 55.8 287 27.2


User provided reference genes

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