Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 1.4e-87 326.2 159 100.0
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 6.4e-45 184.5 150 65.3
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 1.2e-43 180.3 128 73.4
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 4.9e-37 158.3 227 45.8
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 4.3e-33 145.2 129 62.8
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 1.1e-31 140.6 134 58.2
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 1.8e-31 139.8 129 61.2
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 8.6e-26 120.9 80 76.2
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 1.5e-25 120.2 80 77.5
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 6.8e-23 111.3 80 68.8
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 7.6e-22 107.8 80 67.5
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 2.9e-21 105.9 105 60.0
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 2.5e-17 92.8 80 60.0
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 5.6e-17 91.7 122 46.7
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 9.6e-17 90.9 68 66.2
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 1.6e-16 90.1 80 58.8
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 3.6e-16 89.0 68 66.2
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 8.1e-16 87.8 68 61.8
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 8.1e-16 87.8 68 61.8
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 8.1e-16 87.8 68 61.8
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 1.1e-15 87.4 68 64.7
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 1.4e-15 87.0 68 64.7
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 1.4e-15 87.0 68 64.7
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 1.4e-15 87.0 68 64.7
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 1.8e-15 86.7 68 61.8
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 1.8e-15 86.7 68 61.8
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 1.8e-15 86.7 68 61.8
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 1.8e-15 86.7 68 61.8
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 1.8e-15 86.7 68 63.2
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 1.8e-15 86.7 80 56.2
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 2.4e-15 86.3 68 63.2
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 2.4e-15 86.3 80 57.5
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 3.1e-15 85.9 68 60.3
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 3.1e-15 85.9 68 61.8
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 3.1e-15 85.9 114 46.5
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 4.0e-15 85.5 80 57.5
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 4.0e-15 85.5 80 57.5
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 4.0e-15 85.5 68 60.3
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 5.3e-15 85.1 68 60.3
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 5.3e-15 85.1 68 60.3
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 5.3e-15 85.1 68 60.3
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 5.3e-15 85.1 68 61.8
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 5.3e-15 85.1 68 61.8
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 5.3e-15 85.1 68 61.8
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 5.3e-15 85.1 68 61.8
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 6.9e-15 84.7 68 61.8
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 6.9e-15 84.7 76 55.3
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 6.9e-15 84.7 80 55.0
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 6.9e-15 84.7 68 58.8
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 9.0e-15 84.3 68 60.3
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 1.2e-14 84.0 68 58.8
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.2e-14 84.0 68 57.4
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 1.2e-14 84.0 68 60.3
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 1.2e-14 84.0 68 63.2
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 1.2e-14 84.0 68 58.8
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 1.2e-14 84.0 80 55.0
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.5e-14 83.6 68 58.8
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 1.5e-14 83.6 68 58.8
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 1.5e-14 83.6 68 58.8
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 1.5e-14 83.6 68 60.3
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.5e-14 83.6 68 58.8
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 2.0e-14 83.2 68 61.8
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 2.6e-14 82.8 68 58.8
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 2.6e-14 82.8 68 60.3
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 2.6e-14 82.8 68 60.3
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 2.6e-14 82.8 68 60.3
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 3.4e-14 82.4 76 52.6
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 3.4e-14 82.4 76 52.6
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 3.4e-14 82.4 68 57.4
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 3.4e-14 82.4 68 61.8
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 3.4e-14 82.4 80 55.0
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 4.4e-14 82.0 68 57.4
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 4.4e-14 82.0 68 58.8
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 4.4e-14 82.0 80 53.8
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 5.8e-14 81.6 68 58.8
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 5.8e-14 81.6 68 54.4
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 5.8e-14 81.6 68 58.8
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 5.8e-14 81.6 68 58.8
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 5.8e-14 81.6 68 58.8
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 5.8e-14 81.6 68 58.8
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 5.8e-14 81.6 68 58.8
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 5.8e-14 81.6 68 60.3
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 5.8e-14 81.6 68 60.3
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 7.6e-14 81.3 68 58.8
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 7.6e-14 81.3 80 55.0
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 7.6e-14 81.3 68 61.8
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 7.6e-14 81.3 68 61.8
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 7.6e-14 81.3 68 61.8
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 9.9e-14 80.9 68 60.3
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 9.9e-14 80.9 68 58.8
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 9.9e-14 80.9 68 58.8
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.3e-13 80.5 68 57.4
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 1.3e-13 80.5 68 58.8
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 1.3e-13 80.5 68 58.8
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 1.3e-13 80.5 68 58.8
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 1.3e-13 80.5 80 53.8
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 1.3e-13 80.5 68 57.4
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 1.3e-13 80.5 68 60.3
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 1.7e-13 80.1 68 57.4
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 1.7e-13 80.1 68 55.9
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 1.7e-13 80.1 68 58.8
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 1.7e-13 80.1 56 71.4
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 2.2e-13 79.7 68 57.4
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 2.2e-13 79.7 68 58.8
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 2.2e-13 79.7 68 60.3
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 2.9e-13 79.3 68 57.4
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 2.9e-13 79.3 80 53.8
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 2.9e-13 79.3 68 57.4
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 2.9e-13 79.3 68 55.9
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 3.8e-13 79.0 68 57.4
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 6.4e-13 78.2 68 57.4
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 8.4e-13 77.8 68 57.4
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.1e-12 77.4 80 51.2
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 1.4e-12 77.0 68 55.9
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 1.9e-12 76.6 68 54.4
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.9e-12 76.6 80 51.2
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 1.9e-12 76.6 80 51.2
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 2.4e-12 76.3 80 52.5
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 2.4e-12 76.3 67 59.7
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 4.2e-12 75.5 68 54.4
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 7.1e-12 74.7 68 55.9
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 1.2e-11 73.9 62 59.7
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 2.1e-11 73.2 62 56.5
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 3.5e-11 72.4 68 52.9
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 3.5e-11 72.4 60 58.3
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 4.6e-11 72.0 77 48.1
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 4.6e-11 72.0 79 49.4
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 7.9e-11 71.2 59 59.3
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.0e-10 70.9 79 48.1
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 1.0e-10 70.9 68 51.5
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 2.3e-10 69.7 80 48.8
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 5.1e-10 68.6 59 57.6
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 6.6e-10 68.2 60 58.3
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 2.5e-09 66.2 81 48.1
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 2.1e-08 63.2 53 60.4
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 3.1e-07 59.3 68 42.6
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 5.8e-06 55.1 48 56.2


User provided reference genes

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