Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb419290 Zea mays HOM05D003463 ORTHO05D004206 2.0e-62 242.3 123 100.0
Zm00001eb171790 Zea mays HOM05D003463 ORTHO05D004206 2.3e-18 95.9 52 94.2
Zm00001eb413080 Zea mays HOM05D003463 ORTHO05D004206 3.9e-18 95.1 52 92.3
Nn1g06924 Nelumbo nucifera HOM05D003463 ORTHO05D004206 6.7e-10 67.8 52 57.7
TAR629G1280 Trochodendron aralioides HOM05D003463 ORTHO05D004206 6.7e-10 67.8 52 57.7
Aqoxy4G01913 Aquilegia oxysepala HOM05D003463 ORTHO05D004206 7.4e-09 64.3 58 53.4
Cfa014461 Carpinus fangiana HOM05D003463 ORTHO05D004206 7.4e-09 64.3 58 51.7
Ciclev10014009m.g Citrus clementina HOM05D003463 ORTHO05D004206 7.4e-09 64.3 58 53.4
Haze_12964 Corylus avellana HOM05D003463 ORTHO05D004206 7.4e-09 64.3 52 55.8
Nn1g03744 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.3e-08 63.5 52 55.8
PSO541G5151 Papaver somniferum HOM05D003463 ORTHO05D004206 1.3e-08 63.5 58 51.7
PSO675G4322 Papaver somniferum HOM05D003463 ORTHO05D004206 1.3e-08 63.5 58 51.7
Prupe.3G222600 Prunus persica HOM05D003463 ORTHO05D004206 1.7e-08 63.2 52 55.8
Dinv10901 Davidia involucrata HOM05D003463 ORTHO05D004206 2.2e-08 62.8 52 53.8
Solyc07g052940.4 Solanum lycopersicum HOM05D003463 ORTHO05D004206 2.2e-08 62.8 56 50.0
CAN.G86.25 Capsicum annuum HOM05D003463 ORTHO05D004206 2.8e-08 62.4 56 50.0
Nitab4.5_0001134g0130 Nicotiana tabacum HOM05D003463 ORTHO05D004206 2.8e-08 62.4 56 50.0
Nitab4.5_0003429g0030 Nicotiana tabacum HOM05D003463 ORTHO05D004206 2.8e-08 62.4 56 50.0
GSVIVG01030649001 Vitis vinifera HOM05D003463 ORTHO05D004206 2.8e-08 62.4 52 55.8
CiPaw.03G164300 Carya illinoinensis HOM05D003463 ORTHO05D004206 3.7e-08 62.0 58 50.0
CDE11G1115 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 3.7e-08 62.0 52 57.7
Lsat_1_v5_gn_8_129901 Lactuca sativa HOM05D003463 ORTHO05D004206 3.7e-08 62.0 58 48.3
MD09G1103200 Malus domestica HOM05D003463 ORTHO05D004206 3.7e-08 62.0 52 53.8
Sopen07g026490 Solanum pennellii HOM05D003463 ORTHO05D004206 3.7e-08 62.0 50 54.0
CDE05G3394 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 4.8e-08 61.6 52 57.7
Cc05_g05330 Coffea canephora HOM05D003463 ORTHO05D004206 4.8e-08 61.6 58 50.0
TAR627G1072 Trochodendron aralioides HOM05D003463 ORTHO05D004206 4.8e-08 61.6 58 50.0
Ca_20672_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 6.3e-08 61.2 58 50.0
Peaxi162Scf00007g01417 Petunia axillaris HOM05D003463 ORTHO05D004206 6.3e-08 61.2 56 50.0
CSS0042378 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 8.2e-08 60.8 52 53.8
RcHm_v2.0_Chr2g0160501 Rosa chinensis HOM05D003463 ORTHO05D004206 8.2e-08 60.8 52 53.8
Atru.chr6.3118 Acer truncatum HOM05D003463 ORTHO05D004206 1.1e-07 60.5 52 51.9
Oeu011067.1 Olea europaea HOM05D003463 ORTHO05D004206 1.1e-07 60.5 52 51.9
Duzib052G0139 Durio zibethinus HOM05D003463 ORTHO05D004206 1.8e-07 59.7 58 48.3
Psat7g193080 Pisum sativum HOM05D003463 ORTHO05D004206 1.8e-07 59.7 58 50.0
THA.LOC104808502 Tarenaya hassleriana HOM05D003463 ORTHO05D004206 1.8e-07 59.7 52 51.9
Ah.01g005040 Amaranthus hybridus HOM05D003463 ORTHO05D004206 3.1e-07 58.9 58 50.0
HanXRQChr17g0563751 Helianthus annuus HOM05D003463 ORTHO05D004206 3.1e-07 58.9 58 44.8
MD17G1091000 Malus domestica HOM05D003463 ORTHO05D004206 3.1e-07 58.9 52 50.0
Oeu035823.1 Olea europaea HOM05D003463 ORTHO05D004206 3.1e-07 58.9 58 46.6
QL08p034245 Quercus lobata HOM05D003463 ORTHO05D004206 3.1e-07 58.9 58 50.0
CSS0023493 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 4.1e-07 58.5 52 51.9
Cpa.g.sc8.254 Carica papaya HOM05D003463 ORTHO05D004206 4.1e-07 58.5 52 50.0
Phvul.005G112000 Phaseolus vulgaris HOM05D003463 ORTHO05D004206 4.1e-07 58.5 58 48.3
Potri.017G041100 Populus trichocarpa HOM05D003463 ORTHO05D004206 4.1e-07 58.5 58 48.3
Rhsim06G0155700 Rhododendron simsii HOM05D003463 ORTHO05D004206 4.1e-07 58.5 52 53.8
SalBow7G2865 Salvia bowleyana HOM05D003463 ORTHO05D004206 4.1e-07 58.5 58 50.0
TPR.G19054 Trifolium pratense HOM05D003463 ORTHO05D004206 4.1e-07 58.5 58 48.3
HPP92_004145 Vanilla planifolia HOM05D003463 ORTHO05D004206 4.1e-07 58.5 58 50.0
Duzib248G0717 Durio zibethinus HOM05D003463 ORTHO05D004206 5.3e-07 58.2 58 46.6
ECA233G2663 Erigeron canadensis HOM05D003463 ORTHO05D004206 5.3e-07 58.2 58 44.8
vmacro12241 Vaccinium macrocarpon HOM05D003463 ORTHO05D004206 5.3e-07 58.2 52 53.8
VMungo1080G1634 Vigna mungo HOM05D003463 ORTHO05D004206 5.3e-07 58.2 58 48.3
EL10Ac9g22340 Beta vulgaris HOM05D003463 ORTHO05D004206 7.0e-07 57.8 58 46.6
COL.COLO4_13026 Corchorus olitorius HOM05D003463 ORTHO05D004206 7.0e-07 57.8 58 46.6
FvH4_6g43760 Fragaria vesca HOM05D003463 ORTHO05D004206 7.0e-07 57.8 52 50.0
FAN02G4525 Fragaria x ananassa HOM05D003463 ORTHO05D004206 7.0e-07 57.8 52 50.0
FAN05G2372 Fragaria x ananassa HOM05D003463 ORTHO05D004206 7.0e-07 57.8 52 50.0
FAN09G4547 Fragaria x ananassa HOM05D003463 ORTHO05D004206 7.0e-07 57.8 52 50.0
FAN14G1979 Fragaria x ananassa HOM05D003463 ORTHO05D004206 7.0e-07 57.8 52 50.0
PGR042G2093 Punica granatum HOM05D003463 ORTHO05D004206 7.0e-07 57.8 58 46.6
Lalb_Chr14g0375591 Lupinus albus HOM05D003463 ORTHO05D004206 9.1e-07 57.4 58 46.6
Potri.007G119300 Populus trichocarpa HOM05D003463 ORTHO05D004206 9.1e-07 57.4 58 50.0
Sabra17G0027900 Salix brachista HOM05D003463 ORTHO05D004206 9.1e-07 57.4 58 46.6
CiPaw.04G119100 Carya illinoinensis HOM05D003463 ORTHO05D004206 1.2e-06 57.0 52 48.1
Thecc.02G164300 Theobroma cacao HOM05D003463 ORTHO05D004206 1.2e-06 57.0 58 46.6
Medtr4g045743 Medicago truncatula HOM05D003463 ORTHO05D004206 1.5e-06 56.6 58 44.8
Actinidia12489 Actinidia chinensis HOM05D003463 ORTHO05D004206 2.0e-06 56.2 58 48.3
Ca_01564_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 2.0e-06 56.2 52 48.1
Glyma.12G102400 Glycine max HOM05D003463 ORTHO05D004206 2.0e-06 56.2 52 50.0
Dinv18548 Davidia involucrata HOM05D003463 ORTHO05D004206 2.6e-06 55.8 52 50.0
Lj3g0003812 Lotus japonicus HOM05D003463 ORTHO05D004206 2.6e-06 55.8 52 48.1
Manes.13G074400 Manihot esculenta HOM05D003463 ORTHO05D004206 2.6e-06 55.8 58 44.8
Medtr2g089080 Medicago truncatula HOM05D003463 ORTHO05D004206 2.6e-06 55.8 58 44.8
Sc21g0001820 Simmondsia chinensis HOM05D003463 ORTHO05D004206 2.6e-06 55.8 52 48.1
TPR.G30794 Trifolium pratense HOM05D003463 ORTHO05D004206 2.6e-06 55.8 58 44.8
Lalb_Chr19g0135651 Lupinus albus HOM05D003463 ORTHO05D004206 3.4e-06 55.5 50 52.0
CANSAT64G0087 Cannabis sativa HOM05D003463 ORTHO05D004206 4.5e-06 55.1 50 48.0
Migut.M00384 Erythranthe guttata HOM05D003463 ORTHO05D004206 4.5e-06 55.1 56 46.4
Gohir.A03G162950 Gossypium hirsutum HOM05D003463 ORTHO05D004206 4.5e-06 55.1 56 46.4
Gohir.D02G186400 Gossypium hirsutum HOM05D003463 ORTHO05D004206 4.5e-06 55.1 56 46.4
Gorai.005G208600 Gossypium raimondii HOM05D003463 ORTHO05D004206 4.5e-06 55.1 56 46.4
Lj1C753T3 Lonicera japonica HOM05D003463 ORTHO05D004206 5.9e-06 54.7 52 46.2
Psat0s3330g0040 Pisum sativum HOM05D003463 ORTHO05D004206 5.9e-06 54.7 52 50.0
Glyma.06G301900 Glycine max HOM05D003463 ORTHO05D004206 7.7e-06 54.3 58 44.8
Sed0025509 Sechium edule HOM05D003463 ORTHO05D004206 7.7e-06 54.3 52 48.1
TWI18G0507 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 7.7e-06 54.3 52 46.2


User provided reference genes

Program Settings