Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 9.1e-215 750.0 379 100.0
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 1.9e-127 459.9 356 64.9
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 3.2e-127 459.1 356 63.5
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 1.2e-126 457.2 356 63.8
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 2.7e-126 456.1 356 63.2
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 6.0e-126 454.9 356 61.5
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 2.3e-125 453.0 356 62.9
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 2.3e-125 453.0 356 62.4
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 3.9e-125 452.2 352 65.1
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 3.9e-125 452.2 356 62.6
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 5.1e-125 451.8 356 63.2
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 8.7e-125 451.1 356 62.4
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 8.7e-125 451.1 356 63.2
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 1.1e-124 450.7 356 62.1
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 1.5e-124 450.3 356 61.0
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 1.5e-124 450.3 356 62.1
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 1.9e-124 449.9 356 61.2
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 2.5e-124 449.5 356 62.1
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 2.5e-124 449.5 356 62.1
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 1.6e-123 446.8 359 61.6
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 2.1e-123 446.4 356 62.6
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 2.8e-123 446.0 356 61.0
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 2.8e-123 446.0 356 60.7
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 2.8e-123 446.0 356 61.8
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 3.7e-123 445.7 357 62.7
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 4.8e-123 445.3 356 62.1
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 6.2e-123 444.9 356 63.2
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 6.2e-123 444.9 341 66.6
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 6.2e-123 444.9 356 62.4
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 8.1e-123 444.5 356 64.0
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 4.0e-122 442.2 356 62.1
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 5.3e-122 441.8 356 61.8
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 6.9e-122 441.4 356 62.1
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 9.0e-122 441.0 356 61.5
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 9.0e-122 441.0 356 59.8
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 2.0e-121 439.9 356 61.5
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 2.6e-121 439.5 356 61.0
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 3.4e-121 439.1 356 61.8
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 7.6e-121 438.0 356 61.2
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 7.6e-121 438.0 356 60.4
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 9.9e-121 437.6 356 61.8
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 9.9e-121 437.6 356 61.5
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 1.7e-120 436.8 357 60.2
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 1.7e-120 436.8 356 60.4
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 2.2e-120 436.4 356 60.7
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 2.2e-120 436.4 356 60.7
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 2.9e-120 436.0 356 61.5
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 4.9e-120 435.3 395 55.4
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 1.1e-119 434.1 356 60.1
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 1.4e-119 433.7 359 60.4
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 1.9e-119 433.3 356 60.7
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 2.4e-119 433.0 341 63.3
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 3.2e-119 432.6 356 61.8
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 4.2e-119 432.2 227 91.2
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 9.3e-119 431.0 359 60.2
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 1.2e-118 430.6 352 60.2
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 1.2e-118 430.6 370 58.4
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.2e-118 430.6 351 60.4
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 2.7e-118 429.5 356 60.7
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 3.0e-117 426.0 354 60.2
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 6.7e-117 424.9 334 64.1
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 5.6e-116 421.8 356 59.0
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 7.4e-116 421.4 407 55.0
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 1.6e-115 420.2 356 58.7
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 3.7e-115 419.1 340 61.2
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 4.8e-115 418.7 356 58.4
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 6.2e-115 418.3 356 59.3
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 1.5e-113 413.7 421 52.7
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 1.3e-112 410.6 356 58.1
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 1.1e-111 407.5 356 58.1
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 2.5e-111 406.4 356 57.9
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 2.7e-110 402.9 356 57.6
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 6.7e-109 398.3 356 59.0
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 2.2e-107 393.3 341 58.7
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 2.4e-106 389.8 356 56.2
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 3.1e-106 389.4 356 55.9
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 6.9e-106 388.3 356 55.9
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 2.0e-105 386.7 356 55.6
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 4.5e-105 385.6 356 55.6
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 7.6e-105 384.8 357 55.7
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 7.6e-105 384.8 357 55.7
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 1.1e-103 380.9 356 55.1
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 4.2e-103 379.0 356 53.4
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 7.2e-103 378.3 416 50.2
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 2.7e-102 376.3 356 54.5
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 4.6e-102 375.6 370 55.1
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 3.9e-101 372.5 341 56.0
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 6.7e-101 371.7 357 54.3
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 6.7e-101 371.7 357 54.3
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 2.0e-97 360.1 356 53.7
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 2.9e-96 356.3 375 51.5
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 6.5e-96 355.1 371 52.0
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 1.3e-91 340.9 357 49.6
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 4.8e-91 339.0 357 49.3
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 4.1e-90 335.9 364 49.2
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 5.9e-89 332.0 359 49.6
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 5.5e-87 325.5 226 65.5
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 3.6e-86 322.8 365 47.4
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 3.3e-84 316.2 248 59.3
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 2.7e-78 296.6 261 56.7
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 3.6e-70 269.6 188 67.0
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 3.5e-65 253.1 329 46.2
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 2.9e-64 250.0 176 64.2
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 1.7e-56 224.2 371 37.2
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 6.6e-56 222.2 142 71.1
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 1.9e-50 204.1 197 56.3
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 3.0e-48 196.8 139 66.2
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 7.3e-47 192.2 125 72.0
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 1.8e-45 187.6 358 36.6
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 6.0e-41 172.6 140 57.9
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 3.1e-37 160.2 100 74.0
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.1e-34 151.8 99 72.7
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 7.3e-31 139.0 161 51.6
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.7e-25 120.6 90 65.6
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 1.0e-24 118.6 90 55.6
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 1.9e-15 87.8 84 54.8
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 9.6e-15 85.5 87 56.3
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.1e-13 82.0 90 50.0
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 9.9e-12 75.5 131 37.4
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 6.7e-08 62.8 72 45.8
AagrBONN_evm.TU.Sc2ySwM_368.1566 Anthoceros agrestis HOM05D004454 ORTHO05D005462 4.3e-07 60.1 123 30.1


User provided reference genes

Program Settings