Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb417470 Zea mays HOM05D005773 ORTHO05D006930 2.1e-122 443.0 342 100.0
Os05g0137300 Oryza sativa ssp. japonica HOM05D005773 ORTHO05D006930 2.0e-59 233.8 352 54.8
CSS0030034 Camellia sinensis var. sinensis HOM05D005773 ORTHO05D006930 1.7e-23 114.4 93 61.3
Sabra10G0002700 Salix brachista HOM05D005773 ORTHO05D006930 3.9e-23 113.2 87 67.8
Potri.010G003200 Populus trichocarpa HOM05D005773 ORTHO05D006930 5.1e-23 112.8 91 64.8
CiPaw.01G128000 Carya illinoinensis HOM05D005773 ORTHO05D006930 6.6e-23 112.5 94 62.8
Aqoxy2G02493 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 1.5e-22 111.3 96 58.3
Dinv24720 Davidia involucrata HOM05D005773 ORTHO05D006930 3.3e-22 110.2 86 61.6
PGR004G1534 Punica granatum HOM05D005773 ORTHO05D006930 3.3e-22 110.2 104 53.8
Lalb_Chr13g0299011 Lupinus albus HOM05D005773 ORTHO05D006930 4.3e-22 109.8 103 60.2
MBI19_g30285_MAGBIO Magnolia biondii HOM05D005773 ORTHO05D006930 7.3e-22 109.0 94 58.5
Nn3g21943 Nelumbo nucifera HOM05D005773 ORTHO05D006930 7.3e-22 109.0 97 58.8
Cpa.g.sc146.13 Carica papaya HOM05D005773 ORTHO05D006930 1.6e-21 107.8 84 61.9
RcHm_v2.0_Chr4g0427881 Rosa chinensis HOM05D005773 ORTHO05D006930 1.6e-21 107.8 107 54.2
VMungo1215G1523 Vigna mungo HOM05D005773 ORTHO05D006930 2.1e-21 107.5 104 59.6
ECA246G2714 Erigeron canadensis HOM05D005773 ORTHO05D006930 2.8e-21 107.1 86 60.5
ATR0796G282 Amborella trichopoda HOM05D005773 ORTHO05D006930 3.6e-21 106.7 89 59.6
MSTRG.14719 Avicennia marina HOM05D005773 ORTHO05D006930 1.1e-20 105.1 92 57.6
CANSAT78G1256 Cannabis sativa HOM05D005773 ORTHO05D006930 1.1e-20 105.1 90 60.0
PSO210G3229 Papaver somniferum HOM05D005773 ORTHO05D006930 1.1e-20 105.1 95 60.0
Sed0009476 Sechium edule HOM05D005773 ORTHO05D006930 1.1e-20 105.1 87 56.3
Lj4g0014107 Lotus japonicus HOM05D005773 ORTHO05D006930 1.4e-20 104.8 104 55.8
Rhsim04G0249100 Rhododendron simsii HOM05D005773 ORTHO05D006930 1.4e-20 104.8 94 55.3
Phvul.003G123000 Phaseolus vulgaris HOM05D005773 ORTHO05D006930 1.8e-20 104.4 104 57.7
TWI53G0973 Tripterygium wilfordii HOM05D005773 ORTHO05D006930 1.8e-20 104.4 100 53.0
ClCG05G006890 Citrullus lanatus HOM05D005773 ORTHO05D006930 2.4e-20 104.0 87 57.5
Manes.03G212700 Manihot esculenta HOM05D005773 ORTHO05D006930 2.4e-20 104.0 173 40.5
Psat0s1206g0160 Pisum sativum HOM05D005773 ORTHO05D006930 2.4e-20 104.0 92 59.8
Cc03_g00040 Coffea canephora HOM05D005773 ORTHO05D006930 4.0e-20 103.2 82 63.4
Manes.01G234700 Manihot esculenta HOM05D005773 ORTHO05D006930 4.0e-20 103.2 90 60.0
Sed0002380 Sechium edule HOM05D005773 ORTHO05D006930 4.0e-20 103.2 88 55.7
Ca_21368_v3 Cicer arietinum L. HOM05D005773 ORTHO05D006930 6.8e-20 102.4 93 60.2
TPR.G12556 Trifolium pratense HOM05D005773 ORTHO05D006930 6.8e-20 102.4 100 58.0
Medtr4g124080 Medicago truncatula HOM05D005773 ORTHO05D006930 8.9e-20 102.1 100 58.0
Prupe.1G103600 Prunus persica HOM05D005773 ORTHO05D006930 8.9e-20 102.1 100 55.0
TAR633G1051 Trochodendron aralioides HOM05D005773 ORTHO05D006930 8.9e-20 102.1 189 42.9
QL06p014502 Quercus lobata HOM05D005773 ORTHO05D006930 1.2e-19 101.7 102 56.9
arahy.Tifrunner.gnm1.ann1.9W2SDJ Arachis hypogaea HOM05D005773 ORTHO05D006930 2.0e-19 100.9 100 56.0
arahy.Tifrunner.gnm1.ann1.RWG9MN Arachis hypogaea HOM05D005773 ORTHO05D006930 2.0e-19 100.9 100 56.0
Hma1.2p1_1449F.1_g284070 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 2.0e-19 100.9 105 55.2
Nn4g25353 Nelumbo nucifera HOM05D005773 ORTHO05D006930 2.6e-19 100.5 91 59.3
AUR62023652 Chenopodium quinoa HOM05D005773 ORTHO05D006930 3.4e-19 100.1 86 59.3
Duzib138G1928 Durio zibethinus HOM05D005773 ORTHO05D006930 3.4e-19 100.1 96 55.2
FvH4_4g21650 Fragaria vesca HOM05D005773 ORTHO05D006930 3.4e-19 100.1 105 52.4
FAN07G0153 Fragaria x ananassa HOM05D005773 ORTHO05D006930 3.4e-19 100.1 105 52.4
Ah.07g203560 Amaranthus hybridus HOM05D005773 ORTHO05D006930 4.4e-19 99.8 88 55.7
Glyma.17G041600 Glycine max HOM05D005773 ORTHO05D006930 4.4e-19 99.8 100 55.0
HanXRQChr05g0148961 Helianthus annuus HOM05D005773 ORTHO05D006930 4.4e-19 99.8 89 58.4
arahy.Tifrunner.gnm1.ann1.YBC12K Arachis hypogaea HOM05D005773 ORTHO05D006930 5.8e-19 99.4 96 54.2
Ciclev10005574m.g Citrus clementina HOM05D005773 ORTHO05D006930 9.9e-19 98.6 164 40.2
Peaxi162Scf00323g00817 Petunia axillaris HOM05D005773 ORTHO05D006930 9.9e-19 98.6 105 46.7
Atru.chr5.865 Acer truncatum HOM05D005773 ORTHO05D006930 1.3e-18 98.2 199 37.7
Haze_00756 Corylus avellana HOM05D005773 ORTHO05D006930 1.3e-18 98.2 90 60.0
MELO3C006755.2 Cucumis melo HOM05D005773 ORTHO05D006930 1.3e-18 98.2 87 55.2
FAN17G1594 Fragaria x ananassa HOM05D005773 ORTHO05D006930 1.3e-18 98.2 105 51.4
COL.COLO4_23133 Corchorus olitorius HOM05D005773 ORTHO05D006930 1.7e-18 97.8 88 53.4
CsaV3_3G015560 Cucumis sativus L. HOM05D005773 ORTHO05D006930 1.7e-18 97.8 88 53.4
Lsat_1_v5_gn_6_118320 Lactuca sativa HOM05D005773 ORTHO05D006930 1.7e-18 97.8 86 58.1
Oeu012285.1 Olea europaea HOM05D005773 ORTHO05D006930 2.2e-18 97.4 96 51.0
Migut.H01460 Erythranthe guttata HOM05D005773 ORTHO05D006930 2.9e-18 97.1 92 52.2
Sc25g0002150 Simmondsia chinensis HOM05D005773 ORTHO05D006930 2.9e-18 97.1 89 56.2
Thecc.01G324900 Theobroma cacao HOM05D005773 ORTHO05D006930 2.9e-18 97.1 96 53.1
Actinidia01071 Actinidia chinensis HOM05D005773 ORTHO05D006930 3.8e-18 96.7 84 59.5
Cfa015740 Carpinus fangiana HOM05D005773 ORTHO05D006930 3.8e-18 96.7 90 57.8
unitig_26.g9353 Utricularia gibba HOM05D005773 ORTHO05D006930 3.8e-18 96.7 84 56.0
Actinidia18514 Actinidia chinensis HOM05D005773 ORTHO05D006930 4.9e-18 96.3 84 59.5
arahy.Tifrunner.gnm1.ann1.F7JGYB Arachis hypogaea HOM05D005773 ORTHO05D006930 4.9e-18 96.3 101 53.5
AUR62002540 Chenopodium quinoa HOM05D005773 ORTHO05D006930 4.9e-18 96.3 86 58.1
Glyma.13G118300 Glycine max HOM05D005773 ORTHO05D006930 4.9e-18 96.3 99 53.5
MD13G1156700 Malus domestica HOM05D005773 ORTHO05D006930 4.9e-18 96.3 93 54.8
Aqoxy2G02494 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 6.4e-18 95.9 94 50.0
EL10Ac3g06235 Beta vulgaris HOM05D005773 ORTHO05D006930 8.4e-18 95.5 90 53.3
CDE09G0185 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 1.1e-17 95.1 91 50.5
Gohir.A11G104400 Gossypium hirsutum HOM05D005773 ORTHO05D006930 1.1e-17 95.1 96 52.1
Gohir.D11G109200 Gossypium hirsutum HOM05D005773 ORTHO05D006930 1.1e-17 95.1 96 51.0
Gorai.007G116800 Gossypium raimondii HOM05D005773 ORTHO05D006930 1.1e-17 95.1 96 51.0
Nitab4.5_0012375g0020 Nicotiana tabacum HOM05D005773 ORTHO05D006930 1.1e-17 95.1 99 49.5
PGSC0003DMG400004596 Solanum tuberosum HOM05D005773 ORTHO05D006930 1.1e-17 95.1 99 52.5
Nitab4.5_0000978g0060 Nicotiana tabacum HOM05D005773 ORTHO05D006930 1.4e-17 94.7 101 49.5
arahy.Tifrunner.gnm1.ann1.AWA2M3 Arachis hypogaea HOM05D000254 ORTHO05D000165 1.9e-17 94.4 180 36.7
MSTRG.13210 Avicennia marina HOM05D005773 ORTHO05D006930 1.9e-17 94.4 88 54.5
CAN.G484.97 Capsicum annuum HOM05D005773 ORTHO05D006930 3.2e-17 93.6 113 47.8
MD16G1134300 Malus domestica HOM05D005773 ORTHO05D006930 5.4e-17 92.8 93 54.8
Solyc12g098850.2 Solanum lycopersicum HOM05D005773 ORTHO05D006930 5.4e-17 92.8 99 49.5
Duzib133G1161 Durio zibethinus HOM05D005773 ORTHO05D006930 7.1e-17 92.4 96 50.0
SalBow7G0248 Salvia bowleyana HOM05D005773 ORTHO05D006930 7.1e-17 92.4 80 57.5
SalBow7G4520 Salvia bowleyana HOM05D005773 ORTHO05D006930 7.1e-17 92.4 80 57.5
Potri.002G187300 Populus trichocarpa HOM05D005773 ORTHO05D006930 1.2e-16 91.7 90 54.4
Sopen12g033600 Solanum pennellii HOM05D005773 ORTHO05D006930 1.6e-16 91.3 100 50.0
Ciclev10020833m.g Citrus clementina HOM05D005773 ORTHO05D006930 2.1e-16 90.9 95 55.8
CDE02G3050 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 2.7e-16 90.5 91 47.3
Nn3g21941 Nelumbo nucifera HOM05D005773 ORTHO05D006930 2.7e-16 90.5 96 49.0
A08p04910 Brassica napus HOM05D005773 ORTHO05D006930 7.8e-16 89.0 89 50.6
BraA08t32517Z Brassica rapa HOM05D005773 ORTHO05D006930 7.8e-16 89.0 89 50.6
Sp1g35250 Schrenkiella parvula HOM05D005773 ORTHO05D006930 7.8e-16 89.0 87 51.7
C08p05240 Brassica napus HOM05D005773 ORTHO05D006930 1.0e-15 88.6 87 51.7
GSVIVG01017699001 Vitis vinifera HOM05D005773 ORTHO05D006930 1.3e-15 88.2 66 65.2
BcaB04g17451 Brassica carinata HOM05D005773 ORTHO05D006930 1.7e-15 87.8 90 52.2
Hund12260 Selenicereus undatus HOM05D005773 ORTHO05D006930 5.1e-15 86.3 190 33.7
SGA_v2.0_scaffold109G31080 Striga asiatica HOM05D005773 ORTHO05D006930 1.9e-14 84.3 176 35.2
Thhalv10011577m.g Eutrema salsugineum HOM05D005773 ORTHO05D006930 2.5e-14 84.0 88 48.9
BolC8t47338H Brassica oleracea HOM05D005773 ORTHO05D006930 3.3e-14 83.6 87 49.4
THA.LOC104802618 Tarenaya hassleriana HOM05D005773 ORTHO05D006930 3.3e-14 83.6 94 50.0
Eucgr.H04131 Eucalyptus grandis HOM05D005773 ORTHO05D006930 7.3e-14 82.4 100 52.0
AT1G48300 Arabidopsis thaliana HOM05D005773 ORTHO05D006930 9.6e-14 82.0 87 48.3
CARHR037910 Cardamine hirsuta HOM05D005773 ORTHO05D006930 1.2e-13 81.6 87 50.6
AL1G54900 Arabidopsis lyrata HOM05D005773 ORTHO05D006930 2.1e-13 80.9 86 48.8
Aa31LG10G5470 Aethionema arabicum HOM05D005773 ORTHO05D006930 3.6e-13 80.1 88 47.7
arahy.Tifrunner.gnm1.ann1.EN1MLR Arachis hypogaea HOM05D005773 ORTHO05D006930 3.6e-13 80.1 71 56.3
Carub.0001s3743 Capsella rubella HOM05D005773 ORTHO05D006930 4.7e-13 79.7 86 47.7
HPP92_012765 Vanilla planifolia HOM05D005773 ORTHO05D006930 2.0e-11 74.3 47 74.5
BcaC07g37153 Brassica carinata HOM05D005773 ORTHO05D006930 5.8e-11 72.8 50 66.0
Atru.chr4.3177 Acer truncatum HOM05D005773 ORTHO05D006930 1.3e-10 71.6 64 57.8
SEGI_38196 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 1.2e-08 65.1 87 41.4
TAR625G0572 Trochodendron aralioides HOM05D005773 ORTHO05D006930 2.7e-08 63.9 48 66.7
SEGI_24223 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 6.0e-08 62.8 87 41.4
SMO356G0556 Selaginella moellendorffii HOM05D005773 ORTHO05D006930 7.8e-08 62.4 84 38.1
CARHR041400 Cardamine hirsuta HOM05D005773 ORTHO05D006930 3.0e-07 60.5 48 56.2
Hma1.2p1_1067F.1_g253800 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 8.7e-07 58.9 74 50.0
Cpa.g.sc57.12 Carica papaya HOM05D005773 ORTHO05D006930 2.5e-06 57.4 44 61.4


User provided reference genes

Program Settings