Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 4.2e-142 508.1 265 100.0
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 1.0e-103 380.6 266 76.7
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 3.5e-48 196.1 244 46.7
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 7.3e-46 188.3 262 44.7
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 4.8e-45 185.7 254 43.7
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 6.2e-45 185.3 252 44.8
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 1.4e-44 184.1 252 43.7
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 1.4e-44 184.1 261 42.9
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.8e-44 183.7 254 43.3
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.1e-44 183.0 248 44.0
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 3.1e-44 183.0 248 44.0
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 6.9e-44 181.8 255 43.5
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.9e-44 181.8 254 42.9
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 9.0e-44 181.4 250 41.6
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.2e-43 181.0 254 42.9
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 1.5e-43 180.6 252 42.5
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.6e-43 179.9 255 43.1
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 2.6e-43 179.9 255 42.4
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 5.8e-43 178.7 269 42.4
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 7.6e-43 178.3 263 40.3
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 9.9e-43 177.9 261 41.4
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 1.7e-42 177.2 259 41.3
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 3.8e-42 176.0 262 40.8
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 3.8e-42 176.0 257 41.6
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 3.8e-42 176.0 254 42.9
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 6.4e-42 175.3 258 40.7
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 6.4e-42 175.3 248 42.3
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 6.4e-42 175.3 253 41.9
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 8.4e-42 174.9 211 46.0
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.4e-41 173.3 211 45.0
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 2.4e-41 173.3 253 40.7
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.2e-41 172.9 254 40.2
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 4.2e-41 172.6 258 40.3
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 4.2e-41 172.6 252 39.7
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 9.3e-41 171.4 257 39.7
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 1.2e-40 171.0 258 39.1
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 1.6e-40 170.6 251 41.4
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 1.6e-40 170.6 273 37.4
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 2.7e-40 169.9 251 41.0
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 3.5e-40 169.5 244 40.6
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 4.6e-40 169.1 250 42.4
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 4.6e-40 169.1 270 38.1
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 6.0e-40 168.7 247 42.1
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 6.0e-40 168.7 254 39.4
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 7.9e-40 168.3 249 41.0
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 1.0e-39 167.9 233 43.8
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 1.3e-39 167.5 265 39.2
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 1.8e-39 167.2 262 39.7
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 5.1e-39 165.6 253 41.1
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 5.1e-39 165.6 262 40.8
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 5.1e-39 165.6 253 40.7
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 1.1e-38 164.5 261 37.9
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 1.1e-38 164.5 260 37.3
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 1.5e-38 164.1 246 40.7
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 2.5e-38 163.3 246 39.4
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 4.3e-38 162.5 250 39.6
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 5.6e-38 162.2 261 40.6
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 7.4e-38 161.8 256 40.6
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 7.4e-38 161.8 252 39.7
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 9.6e-38 161.4 241 42.3
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 9.6e-38 161.4 251 40.2
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 1.3e-37 161.0 257 38.5
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 1.3e-37 161.0 253 36.8
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 1.6e-37 160.6 255 39.6
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 2.1e-37 160.2 258 36.0
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 2.8e-37 159.8 270 37.0
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 3.7e-37 159.5 257 38.5
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 6.2e-37 158.7 257 36.2
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 8.1e-37 158.3 252 39.3
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 1.1e-36 157.9 122 66.4
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 1.8e-36 157.1 255 36.5
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 1.8e-36 157.1 257 35.8
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 2.4e-36 156.8 270 38.5
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 4.0e-36 156.0 247 38.1
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 4.0e-36 156.0 250 40.4
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 5.3e-36 155.6 196 43.9
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 6.9e-36 155.2 253 39.9
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 1.2e-35 154.5 259 38.6
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 1.2e-35 154.5 243 38.7
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 1.5e-35 154.1 263 36.1
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 2.6e-35 153.3 257 37.0
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 4.5e-35 152.5 253 39.5
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 5.8e-35 152.1 252 37.3
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 5.8e-35 152.1 256 35.2
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 1.0e-34 151.4 245 38.8
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 1.0e-34 151.4 245 38.8
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 1.3e-34 151.0 176 44.9
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 1.3e-34 151.0 243 38.3
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.7e-34 150.6 257 35.0
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 2.2e-34 150.2 250 36.8
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 2.2e-34 150.2 263 38.4
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 2.9e-34 149.8 248 40.7
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 2.9e-34 149.8 251 39.0
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 2.9e-34 149.8 249 37.8
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 3.8e-34 149.4 249 37.8
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 3.8e-34 149.4 243 39.9
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 1.1e-33 147.9 250 36.8
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.4e-33 147.5 247 38.9
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.4e-33 147.5 247 38.9
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 1.4e-33 147.5 256 37.5
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 1.4e-33 147.5 258 37.2
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 1.4e-33 147.5 247 37.2
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 1.9e-33 147.1 241 40.7
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 4.2e-33 146.0 243 37.4
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 5.5e-33 145.6 243 37.9
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 1.6e-32 144.1 244 38.1
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.7e-32 143.3 204 38.7
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 2.7e-32 143.3 161 46.0
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 6.0e-32 142.1 248 35.9
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 6.0e-32 142.1 248 37.5
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 6.0e-32 142.1 197 40.6
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 7.9e-32 141.7 243 38.7
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 7.9e-32 141.7 159 45.9
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 3.9e-31 139.4 159 45.3
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 3.9e-31 139.4 159 45.3
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 6.7e-31 138.7 194 39.2
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 2.5e-30 136.7 248 36.3
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 2.5e-30 136.7 244 33.2
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 5.7e-30 135.6 181 40.3
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 9.6e-30 134.8 203 40.4
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 9.6e-30 134.8 246 33.7
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.3e-29 134.4 241 34.9
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 1.3e-29 134.4 252 36.1
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 6.9e-28 128.6 237 36.3
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 2.6e-27 126.7 242 33.9
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 2.6e-27 126.7 155 43.9
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 2.6e-27 126.7 160 41.2
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 4.5e-27 125.9 160 39.4
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 4.5e-27 125.9 160 39.4
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 1.0e-26 124.8 246 34.6
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.9e-26 123.2 160 40.0
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 1.4e-25 120.9 250 34.0
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 1.9e-25 120.6 176 38.1
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 3.2e-25 119.8 241 34.0
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 9.3e-25 118.2 240 33.3
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 2.1e-24 117.1 197 36.5
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 2.7e-24 116.7 114 46.5
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 3.5e-24 116.3 248 28.6
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 7.9e-24 115.2 237 32.9
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.8e-23 114.0 102 53.9
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 2.3e-23 113.6 118 46.6
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 8.7e-23 111.7 154 36.4
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 8.7e-23 111.7 114 44.7
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 2.5e-22 110.2 138 42.0
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 4.3e-22 109.4 200 36.0
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 5.7e-22 109.0 154 39.6
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 1.3e-21 107.8 254 35.0
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.1e-17 94.7 113 38.1
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 5.5e-17 92.4 249 32.5
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 2.7e-16 90.1 102 39.2
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 3.3e-14 83.2 197 31.5
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 7.4e-14 82.0 90 42.2
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 6.9e-12 75.5 166 31.3
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 9.1e-12 75.1 72 47.2
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.2e-11 74.7 77 46.8
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 1.0e-10 71.6 158 34.2
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 2.2e-10 70.5 278 25.5


User provided reference genes

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