Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 0.0e+00 2255.7 1166 100.0
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 8.0e-278 961.1 1215 47.2
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 4.1e-266 922.2 1202 46.3
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 1.1e-258 897.5 1212 45.0
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 1.1e-258 897.5 1223 44.8
Os08g0152900 Oryza sativa ssp. japonica HOM05D000087 ORTHO05D005735 5.0e-248 862.1 561 79.3
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 1.2e-246 857.4 1203 43.6
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 6.1e-246 855.1 1217 43.6
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 2.2e-243 846.7 1192 43.0
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 1.1e-242 844.3 1215 43.3
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 1.4e-242 844.0 1214 43.4
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 3.2e-242 842.8 1223 42.4
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 5.4e-242 842.0 1174 43.4
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 6.0e-241 838.6 1200 43.2
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 1.0e-240 837.8 1220 42.7
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 3.0e-240 836.3 1191 43.1
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 3.0e-240 836.3 1201 42.5
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 5.2e-237 825.5 1195 41.7
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 6.8e-237 825.1 1198 42.2
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 9.8e-236 821.2 1193 42.2
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 1.3e-235 820.8 1169 43.9
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 1.7e-235 820.5 1185 43.1
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 2.9e-235 819.7 1212 42.2
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 1.1e-234 817.8 1203 41.7
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.4e-234 817.4 1192 42.2
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 1.0e-232 811.2 1143 43.4
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 1.7e-232 810.4 1202 42.3
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 2.5e-231 806.6 1157 43.0
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 3.3e-231 806.2 1193 42.1
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 3.6e-230 802.7 1117 43.7
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 6.8e-229 798.5 1195 41.8
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 6.8e-229 798.5 1192 42.3
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 8.9e-229 798.1 1226 41.8
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 1.2e-228 797.7 1214 40.9
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 7.5e-228 795.0 1216 41.0
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 9.9e-228 794.7 1208 41.5
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 4.9e-227 792.3 1185 41.9
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 8.3e-227 791.6 1193 41.3
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 3.2e-226 789.6 1193 42.0
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 5.1e-224 782.3 1200 40.7
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 2.1e-222 776.9 1212 40.0
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 1.7e-219 767.3 1200 41.0
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 2.9e-219 766.5 1034 44.3
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 1.9e-218 763.8 1204 40.3
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 1.2e-217 761.1 1073 43.3
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 4.6e-217 759.2 1162 41.8
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 4.6e-217 759.2 1162 41.8
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 1.6e-214 750.7 1148 41.7
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 4.7e-214 749.2 1035 43.8
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 1.4e-213 747.7 1155 41.6
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 1.8e-213 747.3 1144 41.5
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 6.9e-213 745.3 1127 42.1
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 1.3e-211 741.1 1199 40.1
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 1.4e-210 737.6 1034 44.2
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 1.4e-210 737.6 1184 39.9
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 2.7e-209 733.4 1204 39.7
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 1.3e-208 731.1 1333 37.7
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 1.7e-208 730.7 1172 40.8
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 3.9e-208 729.6 1188 40.0
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 6.6e-208 728.8 1177 40.3
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 6.6e-208 728.8 1340 37.0
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 6.6e-208 728.8 988 43.2
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 3.3e-207 726.5 1230 38.1
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 7.3e-207 725.3 1143 40.2
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 2.4e-205 720.3 1165 39.1
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 2.5e-199 700.3 1340 36.8
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 6.2e-198 695.7 1037 42.5
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 1.8e-197 694.1 1102 40.5
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 4.0e-197 693.0 1150 39.4
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 2.6e-196 690.3 864 45.7
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 6.4e-195 685.6 1151 38.8
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 1.2e-188 664.8 1227 38.4
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 1.7e-187 661.0 1154 39.4
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 7.9e-185 652.1 1072 40.4
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 1.0e-171 608.6 1056 38.2
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 1.2e-169 601.7 1167 37.0
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 7.9e-169 599.0 1164 35.8
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 1.1e-165 588.6 871 42.9
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 1.1e-165 588.6 839 42.2
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 1.1e-159 568.5 1195 36.2
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 3.3e-159 567.0 905 39.4
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 1.7e-158 564.7 938 38.1
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 1.0e-155 555.4 1117 33.8
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 2.7e-153 547.4 833 40.9
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 1.4e-152 545.0 752 43.5
HPP92_008913 Vanilla planifolia HOM05D000087 ORTHO05D005735 2.5e-146 524.2 678 44.1
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 5.6e-130 469.9 667 40.5
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.4e-125 455.3 994 35.5
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 4.7e-121 440.3 573 43.6
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 5.2e-120 436.8 493 48.7
CARHR143600 Cardamine hirsuta HOM05D000087 ORTHO05D005735 8.3e-110 402.9 443 49.2
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 4.1e-109 400.6 592 42.6
MD14G1143100 Malus domestica HOM05D000087 ORTHO05D005735 4.3e-106 390.6 577 42.6
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 8.9e-104 382.9 779 36.5
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 2.1e-100 371.7 613 42.1
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 8.4e-86 323.2 589 39.0
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 1.5e-82 312.4 484 41.5
SEGI_15816 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 5.6e-82 310.5 390 45.9
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 3.4e-79 301.2 537 39.7
MCO07G377 Micromonas commoda HOM05D000087 ORTHO05D005735 1.3e-67 262.7 1195 26.2
MD14G1142900 Malus domestica HOM05D000087 ORTHO05D005735 3.4e-55 221.5 247 53.8
vmacro08520 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 3.8e-46 191.4 412 33.5
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 1.6e-44 186.0 1163 22.6
SEGI_26992 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 3.7e-41 174.9 258 39.5
Cpa.g.sc363.3 Carica papaya HOM05D000087 ORTHO05D005735 7.7e-39 167.2 178 53.9
Duzib084G0823 Durio zibethinus HOM05D000087 ORTHO05D005735 1.5e-37 162.9 175 50.9
CSS0029196 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 5.5e-37 161.0 175 53.1
AL8G10020 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 2.7e-36 158.7 251 39.8
Duzib084G1107 Durio zibethinus HOM05D000087 ORTHO05D005735 4.7e-36 157.9 413 30.3
HPP92_028197 Vanilla planifolia HOM05D000087 ORTHO05D005735 8.0e-36 157.1 177 49.2
Cre03.g166600 Chlamydomonas reinhardtii HOM05D000087 ORTHO05D005735 3.0e-35 155.2 1145 21.0
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 1.6e-31 142.9 529 28.4
CARHR293880 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.7e-31 142.1 123 56.9
SEGI_26806 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 8.8e-27 127.1 338 29.6
CSS0034403 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.5e-26 126.3 194 40.2
CSS0007327 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.8e-25 122.1 204 37.3
SalBow4G1355 Salvia bowleyana HOM05D000087 ORTHO05D005735 9.2e-24 117.1 350 28.3
FAN13G3301 Fragaria x ananassa HOM05D000087 ORTHO05D005735 2.0e-23 115.9 140 45.0
Oeu053260.1 Olea europaea HOM05D000087 ORTHO05D010194 6.6e-22 110.9 124 50.8
CARHR293870 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.8e-20 105.5 107 46.7
CARHR291390 Cardamine hirsuta HOM05D000087 ORTHO05D005735 5.7e-18 97.8 63 68.3
MBI04_g04804_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.2e-17 95.9 98 49.0
RcHm_v2.0_Chr7g0188121 Rosa chinensis HOM05D000087 ORTHO05D005735 5.4e-16 91.3 71 69.0
SEGI_26704 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 4.6e-15 88.2 81 50.6
MD14G1142800 Malus domestica HOM05D000087 ORTHO05D005735 5.0e-14 84.7 246 30.1
MBI17_g33112_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 6.6e-14 84.3 57 66.7
CiPaw.11G106300 Carya illinoinensis HOM05D000087 ORTHO05D005735 6.2e-12 77.8 258 27.9
Medtr3g080660 Medicago truncatula HOM05D000087 ORTHO05D005735 2.0e-10 72.8 97 44.3
CSS0050207 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 4.4e-10 71.6 96 41.7
CSS0025060 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 5.8e-10 71.2 121 42.1
CARHR046160 Cardamine hirsuta HOM05D000087 ORTHO05D005735 3.7e-09 68.6 61 55.7
Hma1.2p1_0198F.1_g085360 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 1.9e-08 66.2 96 40.6
MBI04_g04802_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 9.2e-08 63.9 68 58.8
MBI04_g04803_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.0e-07 62.8 61 59.0
Rhsim02G0255800 Rhododendron simsii HOM05D000087 ORTHO05D005735 1.0e-06 60.5 101 36.6
VMungo1127G1440 Vigna mungo HOM05D000087 ORTHO05D005735 2.3e-06 59.3 152 31.6


User provided reference genes

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