Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb414470 Zea mays HOM05D006200 ORTHO05D007569 2.7e-32 141.4 69 100.0
Zm00001eb181090 Zea mays HOM05D006200 ORTHO05D007569 1.1e-30 136.0 69 95.7
Zm00001eb057520 Zea mays HOM05D006200 ORTHO05D007569 7.3e-30 133.3 69 95.7
Os03g0751000 Oryza sativa ssp. japonica HOM05D006200 ORTHO05D007569 2.1e-29 131.7 69 92.8
arahy.Tifrunner.gnm1.ann1.GBED9Y Arachis hypogaea HOM05D006200 ORTHO05D007569 6.4e-26 120.2 69 81.2
Lalb_Chr04g0250001 Lupinus albus HOM05D006200 ORTHO05D007569 8.4e-26 119.8 69 81.2
AUR62029092 Chenopodium quinoa HOM05D006200 ORTHO05D007569 1.4e-25 119.0 69 79.7
SGA_v2.0_scaffold181G39681 Striga asiatica HOM05D006200 ORTHO05D007569 1.9e-25 118.6 69 79.7
Ciclev10017136m.g Citrus clementina HOM05D006200 ORTHO05D007569 2.4e-25 118.2 69 79.7
Dinv05360 Davidia involucrata HOM05D006200 ORTHO05D007569 2.4e-25 118.2 69 81.2
Lj8A134G80 Lonicera japonica HOM05D006200 ORTHO05D007569 2.4e-25 118.2 69 79.7
QL08p028355 Quercus lobata HOM05D006200 ORTHO05D007569 2.4e-25 118.2 68 80.9
TAR626G0047 Trochodendron aralioides HOM05D006200 ORTHO05D007569 2.4e-25 118.2 69 81.2
Actinidia09782 Actinidia chinensis HOM05D006200 ORTHO05D007569 3.2e-25 117.9 69 78.3
Hma1.2p1_2053F.1_g312740 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 3.2e-25 117.9 69 79.7
LjContig00029g0002447 Lotus japonicus HOM05D006200 ORTHO05D007569 3.2e-25 117.9 69 81.2
Glyma.02G268700 Glycine max HOM05D006200 ORTHO05D007569 4.1e-25 117.5 69 79.7
Glyma.14G048700 Glycine max HOM05D006200 ORTHO05D007569 4.1e-25 117.5 69 79.7
MD09G1123700 Malus domestica HOM05D006200 ORTHO05D007569 4.1e-25 117.5 69 79.7
Zm00001eb025380 Zea mays HOM05D006200 ORTHO05D007569 4.1e-25 117.5 88 70.5
Medtr5g085420 Medicago truncatula HOM05D006200 ORTHO05D007569 5.4e-25 117.1 69 79.7
Nn1g07469 Nelumbo nucifera HOM05D006200 ORTHO05D007569 5.4e-25 117.1 69 78.3
Psat2g026360 Pisum sativum HOM05D006200 ORTHO05D007569 5.4e-25 117.1 69 79.7
Rhsim04G0037800 Rhododendron simsii HOM05D006200 ORTHO05D007569 5.4e-25 117.1 69 78.3
Haze_12649 Corylus avellana HOM05D006200 ORTHO05D007569 7.1e-25 116.7 69 79.7
CsaV3_7G002590 Cucumis sativus L. HOM05D006200 ORTHO05D007569 7.1e-25 116.7 69 81.2
Peaxi162Scf00776g00024 Petunia axillaris HOM05D006200 ORTHO05D007569 7.1e-25 116.7 69 79.7
Prupe.3G200400 Prunus persica HOM05D006200 ORTHO05D007569 7.1e-25 116.7 69 79.7
Thecc.01G190500 Theobroma cacao HOM05D006200 ORTHO05D007569 7.1e-25 116.7 69 76.8
TPR.G25628 Trifolium pratense HOM05D006200 ORTHO05D007569 7.1e-25 116.7 69 81.2
Cfa014235 Carpinus fangiana HOM05D000160 ORTHO05D000496 9.2e-25 116.3 69 78.3
CDE07G1212 Ceratophyllum demersum HOM05D006200 ORTHO05D007569 9.2e-25 116.3 69 76.8
Migut.M00041 Erythranthe guttata HOM05D006200 ORTHO05D007569 9.2e-25 116.3 69 79.7
Potri.014G164500 Populus trichocarpa HOM05D006200 ORTHO05D007569 9.2e-25 116.3 69 79.7
Sed0012997 Sechium edule HOM05D006200 ORTHO05D007569 9.2e-25 116.3 69 79.7
Atru.chr6.3355 Acer truncatum HOM05D006200 ORTHO05D007569 1.2e-24 115.9 69 78.3
CAN.G1036.6 Capsicum annuum HOM05D006200 ORTHO05D007569 1.2e-24 115.9 69 79.7
Manes.13G063700 Manihot esculenta HOM05D006200 ORTHO05D007569 1.2e-24 115.9 69 79.7
PSO541G4622 Papaver somniferum HOM05D006200 ORTHO05D007569 1.2e-24 115.9 69 81.2
Solyc07g047700.4 Solanum lycopersicum HOM05D006200 ORTHO05D007569 1.2e-24 115.9 69 79.7
PGSC0003DMG400006126 Solanum tuberosum HOM05D006200 ORTHO05D007569 1.2e-24 115.9 69 79.7
CANSAT64G0383 Cannabis sativa HOM05D006200 ORTHO05D007569 1.6e-24 115.5 69 79.7
ClCG02G002790 Citrullus lanatus HOM05D006200 ORTHO05D007569 1.6e-24 115.5 69 79.7
MD17G1114500 Malus domestica HOM05D006200 ORTHO05D007569 1.6e-24 115.5 69 79.7
Nitab4.5_0001774g0080 Nicotiana tabacum HOM05D006200 ORTHO05D007569 1.6e-24 115.5 69 78.3
Sed0007295 Sechium edule HOM05D006200 ORTHO05D007569 1.6e-24 115.5 69 81.2
Sopen07g024150 Solanum pennellii HOM05D006200 ORTHO05D007569 1.6e-24 115.5 69 79.7
CiPaw.04G196600 Carya illinoinensis HOM05D006200 ORTHO05D007569 2.1e-24 115.2 69 76.8
Hma1.2p1_0545F.1_g176060 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 2.1e-24 115.2 69 78.3
CSS0018696 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 2.7e-24 114.8 69 75.4
CSS0021565 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 2.7e-24 114.8 69 75.4
Cc05_g02100 Coffea canephora HOM05D006200 ORTHO05D007569 3.5e-24 114.4 69 76.8
MSTRG.14921 Avicennia marina HOM05D006200 ORTHO05D007569 4.6e-24 114.0 69 76.8
PSO675G7132 Papaver somniferum HOM05D006200 ORTHO05D007569 4.6e-24 114.0 69 79.7
TWI36G1668 Tripterygium wilfordii HOM05D006200 ORTHO05D007569 6.0e-24 113.6 69 78.3
HanXRQChr10g0306841 Helianthus annuus HOM05D006200 ORTHO05D007569 7.8e-24 113.2 69 75.4
Oeu040457.1 Olea europaea HOM05D006200 ORTHO05D007569 7.8e-24 113.2 69 75.4
Lsat_1_v5_gn_5_121761 Lactuca sativa HOM05D006200 ORTHO05D007569 1.0e-23 112.8 69 75.4
ATR0624G019 Amborella trichopoda HOM05D006200 ORTHO05D007569 1.3e-23 112.5 69 78.3
MSTRG.6639 Avicennia marina HOM05D006200 ORTHO05D007569 1.3e-23 112.5 69 76.8
Carub.0003s2650 Capsella rubella HOM05D006200 ORTHO05D007569 1.3e-23 112.5 69 78.3
RcHm_v2.0_Chr2g0156461 Rosa chinensis HOM05D006200 ORTHO05D007569 1.3e-23 112.5 69 76.8
Aqoxy4G02230 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 1.7e-23 112.1 69 78.3
Cc02_g04700 Coffea canephora HOM05D006200 ORTHO05D007569 1.7e-23 112.1 69 75.4
Duzib138G0810 Durio zibethinus HOM05D006200 ORTHO05D007569 1.7e-23 112.1 69 76.8
Gohir.A07G167000 Gossypium hirsutum HOM05D006200 ORTHO05D007569 1.7e-23 112.1 68 76.5
Gohir.D07G172300 Gossypium hirsutum HOM05D006200 ORTHO05D007569 1.7e-23 112.1 68 76.5
Gorai.001G192600 Gossypium raimondii HOM05D006200 ORTHO05D007569 1.7e-23 112.1 68 76.5
MBI16_g28733_MAGBIO Magnolia biondii HOM05D006200 ORTHO05D007569 1.7e-23 112.1 69 76.8
Sp3g23500 Schrenkiella parvula HOM05D006200 ORTHO05D007569 1.7e-23 112.1 69 78.3
HPP92_012226 Vanilla planifolia HOM05D006200 ORTHO05D007569 1.7e-23 112.1 69 75.4
AL3G42530 Arabidopsis lyrata HOM05D006200 ORTHO05D007569 2.3e-23 111.7 69 78.3
AT2G04900 Arabidopsis thaliana HOM05D006200 ORTHO05D007569 2.3e-23 111.7 69 78.3
BcaB06g26789 Brassica carinata HOM05D006200 ORTHO05D007569 2.3e-23 111.7 69 78.3
C07p10040 Brassica napus HOM05D006200 ORTHO05D007569 2.3e-23 111.7 69 78.3
BraA07t28456Z Brassica rapa HOM05D006200 ORTHO05D007569 2.3e-23 111.7 69 78.3
Thhalv10002727m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 2.3e-23 111.7 69 78.3
SalBow7G0450 Salvia bowleyana HOM05D006200 ORTHO05D007569 2.3e-23 111.7 69 75.4
Manes.12G061800 Manihot esculenta HOM05D006200 ORTHO05D007569 3.0e-23 111.3 69 78.3
THA.LOC104815354 Tarenaya hassleriana HOM05D006200 ORTHO05D007569 3.0e-23 111.3 69 76.8
GSVIVG01030518001 Vitis vinifera HOM05D006200 ORTHO05D007569 3.0e-23 111.3 69 73.9
GSVIVG01030523001 Vitis vinifera HOM05D006200 ORTHO05D007569 3.0e-23 111.3 69 73.9
Cpa.g.sc136.18 Carica papaya HOM05D006200 ORTHO05D007569 3.9e-23 110.9 69 72.5
ECA234G3013 Erigeron canadensis HOM05D006200 ORTHO05D007569 3.9e-23 110.9 69 72.5
MELO3C024201.2 Cucumis melo HOM05D006200 ORTHO05D007569 5.1e-23 110.5 74 75.7
FvH4_6g40890 Fragaria vesca HOM05D006200 ORTHO05D007569 5.1e-23 110.5 69 75.4
FAN02G1931 Fragaria x ananassa HOM05D006200 ORTHO05D007569 5.1e-23 110.5 69 75.4
BcaC06g35887 Brassica carinata HOM05D006200 ORTHO05D007569 6.6e-23 110.2 69 76.8
BolC7t41451H Brassica oleracea HOM05D006200 ORTHO05D007569 6.6e-23 110.2 69 76.8
CARHR102920 Cardamine hirsuta HOM05D006200 ORTHO05D007569 6.6e-23 110.2 69 76.8
A07p06630 Brassica napus HOM05D006200 ORTHO05D007569 8.6e-23 109.8 69 76.8
Rhsim02G0017500 Rhododendron simsii HOM05D006200 ORTHO05D007569 8.6e-23 109.8 69 72.5
Eucgr.A01040 Eucalyptus grandis HOM05D006200 ORTHO05D007569 1.9e-22 108.6 69 73.9
SEGI_07661 Sequoiadendron giganteum HOM05D006200 ORTHO05D007569 1.9e-22 108.6 69 73.9
Mapoly0007s0279 Marchantia polymorpha HOM05D006200 ORTHO05D007569 3.3e-22 107.8 68 70.6
Pp3c6_18900 Physcomitrium patens HOM05D006200 ORTHO05D007569 7.3e-22 106.7 69 72.5
FAN05G3226 Fragaria x ananassa HOM05D006200 ORTHO05D007569 5.2e-20 100.5 84 61.9
FAN09G2038 Fragaria x ananassa HOM05D006200 ORTHO05D007569 5.2e-20 100.5 84 61.9
FAN14G5749 Fragaria x ananassa HOM05D006200 ORTHO05D007569 5.2e-20 100.5 84 61.9
Sabra14G0125300 Salix brachista HOM05D006200 ORTHO05D007569 1.2e-19 99.4 96 55.2
Pp3c6_18880 Physcomitrium patens HOM05D006200 ORTHO05D007569 2.0e-19 98.6 69 65.2
vmacro09406 Vaccinium macrocarpon HOM05D006200 ORTHO05D007569 2.6e-19 98.2 102 52.0
Zm00001eb093000 Zea mays HOM05D006200 ORTHO05D007569 2.2e-18 95.1 56 83.9
Zm00001eb125940 Zea mays HOM05D000001 ORTHO05D007569 8.4e-18 93.2 56 83.9
COL.COLO4_33018 Corchorus olitorius HOM05D006200 ORTHO05D007569 1.1e-17 92.8 112 45.5
Zm00001eb402120 Zea mays HOM05D006200 ORTHO05D007569 2.4e-17 91.7 45 97.8
Aa31sc107G30 Aethionema arabicum HOM05D006200 ORTHO05D007569 1.6e-16 89.0 98 50.0
SMO356G0472 Selaginella moellendorffii HOM05D006200 ORTHO05D007569 1.4e-12 75.9 49 67.3
Cre12.g543050 Chlamydomonas reinhardtii HOM05D006200 ORTHO05D007569 1.5e-11 72.4 68 48.5
arahy.Tifrunner.gnm1.ann1.HJ95Y2 Arachis hypogaea HOM05D006200 ORTHO05D007569 8.4e-10 66.6 36 80.6
Phvul.008G213600 Phaseolus vulgaris HOM05D006200 ORTHO05D007569 9.3e-09 63.2 36 80.6
Ah.01g013830 Amaranthus hybridus HOM05D004982 ORTHO05D007569 2.7e-08 61.6 36 75.0
Hund21568 Selenicereus undatus HOM05D006200 ORTHO05D007569 1.0e-07 59.7 89 43.8
C03p34670 Brassica napus HOM05D006200 ORTHO05D007569 1.3e-07 59.3 50 68.0
BolC3t15778H Brassica oleracea HOM05D006200 ORTHO05D007569 1.3e-07 59.3 50 68.0
DCAR_021101 Daucus carota HOM05D006200 ORTHO05D007569 6.7e-07 57.0 36 66.7


User provided reference genes

Program Settings