Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb413810 Zea mays HOM05D005342 ORTHO05D006925 7.6e-86 320.9 212 100.0
Zm00001eb171110 Zea mays HOM05D005342 ORTHO05D006925 3.5e-67 258.8 200 92.0
Os08g0207600 Oryza sativa ssp. japonica HOM05D005342 ORTHO05D006925 2.4e-47 193.0 203 72.9
Nn2g13664 Nelumbo nucifera HOM05D005342 ORTHO05D006925 3.6e-27 125.9 133 57.9
TAR626G0514 Trochodendron aralioides HOM05D005342 ORTHO05D006925 4.7e-27 125.6 120 63.3
Thecc.02G004100 Theobroma cacao HOM05D005342 ORTHO05D006925 4.0e-26 122.5 109 63.3
AT1G30960 Arabidopsis thaliana HOM05D005342 ORTHO05D006925 5.2e-26 122.1 127 59.1
Sabra01G0131500 Salix brachista HOM05D005342 ORTHO05D006925 5.2e-26 122.1 116 62.1
vmacro21284 Vaccinium macrocarpon HOM05D005342 ORTHO05D006925 6.8e-26 121.7 115 63.5
Cpa.g.sc30.113 Carica papaya HOM05D005342 ORTHO05D006925 8.8e-26 121.3 116 63.8
Gohir.D01G176400 Gossypium hirsutum HOM05D005342 ORTHO05D006925 1.2e-25 120.9 82 80.5
Gorai.002G218700 Gossypium raimondii HOM05D005342 ORTHO05D006925 1.2e-25 120.9 82 80.5
AL1G45370 Arabidopsis lyrata HOM05D005342 ORTHO05D006925 3.4e-25 119.4 128 59.4
Carub.0001s2937 Capsella rubella HOM05D005342 ORTHO05D006925 3.4e-25 119.4 138 55.8
Dinv11757 Davidia involucrata HOM05D005342 ORTHO05D006925 3.4e-25 119.4 123 58.5
PSO017G0115 Papaver somniferum HOM05D005342 ORTHO05D006925 3.4e-25 119.4 116 60.3
THA.LOC104814325 Tarenaya hassleriana HOM05D005342 ORTHO05D006925 3.4e-25 119.4 143 53.1
GSVIVG01012146001 Vitis vinifera HOM05D005342 ORTHO05D006925 3.4e-25 119.4 114 64.9
Lsat_1_v5_gn_6_95820 Lactuca sativa HOM05D005342 ORTHO05D006925 4.4e-25 119.0 90 71.1
BcaC05g27129 Brassica carinata HOM05D005342 ORTHO05D006925 5.7e-25 118.6 115 62.6
C05p30140 Brassica napus HOM05D005342 ORTHO05D006925 5.7e-25 118.6 115 62.6
BolC5t31751H Brassica oleracea HOM05D005342 ORTHO05D006925 5.7e-25 118.6 115 62.6
Aa31LG9G16230 Aethionema arabicum HOM05D005342 ORTHO05D006925 7.5e-25 118.2 131 52.7
PSO063G2198 Papaver somniferum HOM05D005342 ORTHO05D006925 7.5e-25 118.2 116 59.5
arahy.Tifrunner.gnm1.ann1.T4IDLE Arachis hypogaea HOM05D005342 ORTHO05D006925 9.8e-25 117.9 121 61.2
CARHR030500 Cardamine hirsuta HOM05D005342 ORTHO05D006925 9.8e-25 117.9 124 56.5
Dinv36886 Davidia involucrata HOM05D005342 ORTHO05D006925 1.3e-24 117.5 119 59.7
HPP92_001898 Vanilla planifolia HOM05D005342 ORTHO05D006925 1.3e-24 117.5 83 79.5
CsaV3_6G052760 Cucumis sativus L. HOM05D005342 ORTHO05D006925 1.7e-24 117.1 118 60.2
Ah.11g044120 Amaranthus hybridus HOM05D005342 ORTHO05D006925 2.2e-24 116.7 134 56.0
PGR004G0306 Punica granatum HOM05D005342 ORTHO05D006925 4.8e-24 115.5 93 69.9
A09p35250 Brassica napus HOM05D005342 ORTHO05D006925 6.3e-24 115.2 120 58.3
Cc09_g05200 Coffea canephora HOM05D005342 ORTHO05D006925 8.3e-24 114.8 132 52.3
Thhalv10007654m.g Eutrema salsugineum HOM05D005342 ORTHO05D006925 1.1e-23 114.4 126 56.3
Sopen02g026270 Solanum pennellii HOM05D005342 ORTHO05D006925 1.8e-23 113.6 83 75.9
SGA_v2.0_scaffold298G47707 Striga asiatica HOM05D005342 ORTHO05D006925 1.8e-23 113.6 119 54.6
C07p14720 Brassica napus HOM05D005342 ORTHO05D006925 2.4e-23 113.2 128 55.5
BraA07t28750Z Brassica rapa HOM05D005342 ORTHO05D006925 2.4e-23 113.2 113 58.4
Migut.M02010 Erythranthe guttata HOM05D005342 ORTHO05D006925 2.4e-23 113.2 120 53.3
Lalb_Chr10g0095551 Lupinus albus HOM05D005342 ORTHO05D006925 2.4e-23 113.2 115 60.0
BolC7t41974H Brassica oleracea HOM05D005342 ORTHO05D006925 3.1e-23 112.8 129 55.0
Medtr5g020440 Medicago truncatula HOM05D005342 ORTHO05D006925 3.1e-23 112.8 123 57.7
Medtr6g024095 Medicago truncatula HOM05D005342 ORTHO05D006925 3.1e-23 112.8 123 57.7
SHI17083 Sapria himalayana HOM05D005342 ORTHO05D006925 3.1e-23 112.8 114 57.9
HPP92_001866 Vanilla planifolia HOM05D005342 ORTHO05D006925 3.1e-23 112.8 116 59.5
BraA09t39052Z Brassica rapa HOM05D005342 ORTHO05D006925 4.1e-23 112.5 121 57.9
Sp1g26820 Schrenkiella parvula HOM05D005342 ORTHO05D006925 4.1e-23 112.5 124 56.5
PGSC0003DMG400017735 Solanum tuberosum HOM05D005342 ORTHO05D006925 5.4e-23 112.1 83 74.7
SalBow8G1060 Salvia bowleyana HOM05D005342 ORTHO05D006925 7.0e-23 111.7 116 53.4
Solyc02g081660.3 Solanum lycopersicum HOM05D005342 ORTHO05D006925 7.0e-23 111.7 136 54.4
Potri.001G160800 Populus trichocarpa HOM05D005342 ORTHO05D006925 1.6e-22 110.5 131 55.0
MSTRG.16371 Avicennia marina HOM05D005342 ORTHO05D006925 2.7e-22 109.8 127 50.4
A07p09560 Brassica napus HOM05D005342 ORTHO05D006925 2.7e-22 109.8 113 57.5
AUR62038720 Chenopodium quinoa HOM05D005342 ORTHO05D006925 2.7e-22 109.8 79 78.5
Duzib132G0347 Durio zibethinus HOM05D005342 ORTHO05D006925 3.5e-22 109.4 113 55.8
TWI53G1312 Tripterygium wilfordii HOM05D005342 ORTHO05D006925 4.5e-22 109.0 122 56.6
ATR0763G223 Amborella trichopoda HOM05D005342 ORTHO05D006925 1.3e-21 107.5 101 60.4
Cfa001127 Carpinus fangiana HOM05D005342 ORTHO05D006925 1.7e-21 107.1 118 55.9
unitig_749.g13576 Utricularia gibba HOM05D005342 ORTHO05D006925 1.7e-21 107.1 116 55.2
Glyma.07G173800 Glycine max HOM05D005342 ORTHO05D006925 2.9e-21 106.3 122 57.4
Nitab4.5_0013176g0020 Nicotiana tabacum HOM05D005342 ORTHO05D006925 6.5e-21 105.1 82 72.0
EL10Ac2g03680 Beta vulgaris HOM05D005342 ORTHO05D006925 8.5e-21 104.8 125 54.4
arahy.Tifrunner.gnm1.ann1.EGN9M7 Arachis hypogaea HOM05D005342 ORTHO05D006925 4.2e-20 102.4 65 83.1
CDE03G0515 Ceratophyllum demersum HOM05D005342 ORTHO05D006925 5.5e-20 102.1 124 51.6
Ca_26328_v3 Cicer arietinum L. HOM05D005342 ORTHO05D006925 7.2e-20 101.7 63 82.5
Oeu016702.1 Olea europaea HOM05D005342 ORTHO05D006925 9.4e-20 101.3 75 72.0
Psat6g050320 Pisum sativum HOM05D005342 ORTHO05D006925 9.4e-20 101.3 63 82.5
DCAR_001275 Daucus carota HOM05D005342 ORTHO05D006925 1.6e-19 100.5 121 52.9
Actinidia37827 Actinidia chinensis HOM05D005342 ORTHO05D006925 2.1e-19 100.1 58 87.9
BcaB07g32756 Brassica carinata HOM05D005342 ORTHO05D006925 2.1e-19 100.1 66 78.8
CANSAT35G0196 Cannabis sativa HOM05D005342 ORTHO05D006925 2.1e-19 100.1 58 91.4
Aqoxy1G01397 Aquilegia oxysepala HOM05D005342 ORTHO05D006925 4.7e-19 99.0 71 73.2
HanXRQChr05g0148741 Helianthus annuus HOM05D005342 ORTHO05D006925 4.7e-19 99.0 138 47.8
ECA246G2798 Erigeron canadensis HOM05D005342 ORTHO05D006925 1.0e-18 97.8 58 86.2
Nitab4.5_0006794g0030 Nicotiana tabacum HOM05D005342 ORTHO05D006925 1.0e-18 97.8 58 86.2
MD10G1227500 Malus domestica HOM05D005342 ORTHO05D006925 1.4e-18 97.4 58 84.5
Lj2g0003117 Lotus japonicus HOM05D005342 ORTHO05D006925 2.3e-18 96.7 60 83.3
Peaxi162Scf00520g00219 Petunia axillaris HOM05D005342 ORTHO05D006925 3.0e-18 96.3 55 89.1
MD05G1246900 Malus domestica HOM05D005342 ORTHO05D006925 4.0e-18 95.9 57 84.2
CiPaw.09G137700 Carya illinoinensis HOM05D005342 ORTHO05D006925 6.8e-18 95.1 56 87.5
Phvul.003G015000 Phaseolus vulgaris HOM05D005342 ORTHO05D006925 6.8e-18 95.1 122 50.8
CSS0011520 Camellia sinensis var. sinensis HOM05D005342 ORTHO05D006925 8.8e-18 94.7 54 88.9
CSS0036835 Camellia sinensis var. sinensis HOM05D005342 ORTHO05D006925 8.8e-18 94.7 54 88.9
MELO3C007034.2 Cucumis melo HOM05D005342 ORTHO05D006925 8.8e-18 94.7 117 50.4
Sc17g0004080 Simmondsia chinensis HOM05D005342 ORTHO05D006925 1.5e-17 94.0 62 80.6
TPR.G34568 Trifolium pratense HOM05D005342 ORTHO05D006925 1.5e-17 94.0 55 87.3
FAN21G1494 Fragaria x ananassa HOM05D005342 ORTHO05D006925 2.0e-17 93.6 58 79.3
Hund19384 Selenicereus undatus HOM05D005342 ORTHO05D006925 2.0e-17 93.6 123 51.2
ClCG01G025520 Citrullus lanatus HOM05D005342 ORTHO05D006925 2.6e-17 93.2 54 85.2
Atru.chr10.317 Acer truncatum HOM05D005342 ORTHO05D006925 7.5e-17 91.7 55 83.6
Atru.chr10.349 Acer truncatum HOM05D005342 ORTHO05D006925 7.5e-17 91.7 55 83.6
Haze_05265 Corylus avellana HOM05D005342 ORTHO05D006925 7.5e-17 91.7 54 85.2
Mapoly0029s0109 Marchantia polymorpha HOM05D005342 ORTHO05D006925 7.5e-17 91.7 98 56.1
Prupe.4G117500 Prunus persica HOM05D005342 ORTHO05D006925 7.5e-17 91.7 54 85.2
QL11p012260 Quercus lobata HOM05D005342 ORTHO05D006925 7.5e-17 91.7 54 87.0
Manes.03G075200 Manihot esculenta HOM05D005342 ORTHO05D006925 1.3e-16 90.9 68 70.6
Sed0018199 Sechium edule HOM05D005342 ORTHO05D006925 2.2e-16 90.1 54 83.3
RcHm_v2.0_Chr5g0021061 Rosa chinensis HOM05D005342 ORTHO05D006925 4.9e-16 89.0 54 81.5
Pp3c8_14960 Physcomitrium patens HOM05D005342 ORTHO05D006925 6.3e-16 88.6 93 55.9
CAN.G809.68 Capsicum annuum HOM05D005342 ORTHO05D006925 8.3e-16 88.2 157 43.3
Atru.chr10.358 Acer truncatum HOM05D002757 ORTHO05D003252 1.8e-15 87.0 55 80.0
FvH4_3g12950 Fragaria vesca HOM05D005342 ORTHO05D006925 2.4e-15 86.7 54 77.8
FAN11G0369 Fragaria x ananassa HOM05D005342 ORTHO05D006925 2.4e-15 86.7 54 77.8
FAN16G1572 Fragaria x ananassa HOM05D005342 ORTHO05D006925 2.4e-15 86.7 54 77.8
SMO347G0253 Selaginella moellendorffii HOM05D005342 ORTHO05D006925 4.1e-15 85.9 73 64.4
Ciclev10015344m.g Citrus clementina HOM05D005342 ORTHO05D006925 1.2e-14 84.3 125 44.0
TPR.G641 Trifolium pratense HOM05D005342 ORTHO05D006925 1.6e-14 84.0 105 54.3
Lj2A343T76 Lonicera japonica HOM05D005342 ORTHO05D006925 2.3e-13 80.1 79 60.8
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 1.2e-11 74.3 89 50.6
AagrBONN_evm.TU.Sc2ySwM_368.2515 Anthoceros agrestis HOM05D005342 ORTHO05D006925 2.8e-11 73.2 111 48.6
MCO16G643 Micromonas commoda HOM05D005342 ORTHO05D006925 4.4e-09 65.9 57 57.9
Zm00001eb285440 Zea mays HOM05D000915 ORTHO05D001662 2.4e-07 60.1 66 56.1
vmacro07644 Vaccinium macrocarpon HOM05D005342 ORTHO05D006925 9.2e-07 58.2 87 46.0
FAN09G0512 Fragaria x ananassa HOM05D005342 ORTHO05D006925 2.7e-06 56.6 56 57.1
Medtr1g033240 Medicago truncatula HOM05D005342 ORTHO05D006925 5.9e-06 55.5 30 90.0
Gohir.A01G185820 Gossypium hirsutum HOM05D005342 ORTHO05D006925 7.8e-06 55.1 31 87.1


User provided reference genes

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