Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb413560 Zea mays HOM05D026208 ORTHO05D030341 1.8e-244 849.7 824 100.0
Zm00001eb140410 Zea mays HOM05D026208 ORTHO05D030341 6.6e-178 628.6 822 88.3
Os02g0644600 Oryza sativa ssp. japonica HOM05D026208 ORTHO05D030341 1.0e-24 119.8 71 80.3
Os11g0659400 Oryza sativa ssp. japonica HOM05D026208 ORTHO05D030341 1.0e-24 119.8 71 80.3
HPP92_026390 Vanilla planifolia HOM05D004824 ORTHO05D003903 3.3e-20 104.8 272 28.7
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 2.2e-19 102.1 295 26.8
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 1.8e-18 99.0 292 26.4
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 5.3e-18 97.4 292 25.7
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 7.7e-17 93.6 277 22.4
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 1.0e-16 93.2 315 21.3
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 1.3e-16 92.8 288 24.7
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 1.7e-16 92.4 286 22.4
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 2.9e-16 91.7 286 22.4
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 1.1e-15 89.7 335 24.2
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 1.2e-14 86.3 329 23.1
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 4.6e-14 84.3 282 25.9
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 4.6e-14 84.3 274 22.6
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 4.6e-14 84.3 148 31.8
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 1.8e-13 82.4 315 21.0
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 3.9e-13 81.3 285 23.9
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 8.8e-13 80.1 275 22.9
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 8.8e-13 80.1 232 26.7
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 1.1e-12 79.7 182 34.1
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 3.3e-12 78.2 210 27.1
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 5.7e-12 77.4 147 30.6
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 9.7e-12 76.6 192 31.2
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 2.8e-11 75.1 153 28.1
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 3.7e-11 74.7 274 23.7
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 1.1e-10 73.2 158 30.4
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 1.4e-10 72.8 144 34.0
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 1.4e-10 72.8 196 25.5
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 1.8e-10 72.4 151 31.1
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 3.1e-10 71.6 185 28.1
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 3.1e-10 71.6 152 28.3
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 4.1e-10 71.2 189 27.5
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 5.3e-10 70.9 274 23.7
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 5.3e-10 70.9 274 24.1
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 5.3e-10 70.9 188 28.2
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 6.9e-10 70.5 299 22.1
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 6.9e-10 70.5 322 23.6
SHI35543 Sapria himalayana HOM05D008459 ORTHO05D003903 6.9e-10 70.5 98 40.8
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 1.2e-09 69.7 160 28.1
MSTRG.23210 Avicennia marina HOM05D007893 ORTHO05D010042 1.5e-09 69.3 221 19.0
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 1.5e-09 69.3 175 24.0
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 2.0e-09 68.9 146 30.1
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 2.6e-09 68.6 153 26.1
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 3.4e-09 68.2 157 26.1
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 5.9e-09 67.4 161 31.7
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 7.7e-09 67.0 168 25.6
SGA_v2.0_scaffold8G04573 Striga asiatica HOM05D000424 ORTHO05D002854 7.7e-09 67.0 257 23.3
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 1.0e-08 66.6 174 30.5
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 1.3e-08 66.2 290 22.8
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 1.3e-08 66.2 182 28.6
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 1.7e-08 65.9 148 30.4
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 1.7e-08 65.9 167 26.9
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 2.2e-08 65.5 240 25.0
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 2.9e-08 65.1 197 26.9
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 3.8e-08 64.7 174 25.3
SHI32541 Sapria himalayana HOM05D008459 ORTHO05D003903 3.8e-08 64.7 102 39.2
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 8.5e-08 63.5 175 28.6
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 8.5e-08 63.5 183 26.2
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 8.5e-08 63.5 176 27.3
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 1.1e-07 63.2 203 24.6
Haze_23854 Corylus avellana HOM05D006694 ORTHO05D008240 1.1e-07 63.2 148 26.4
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 1.1e-07 63.2 184 24.5
arahy.Tifrunner.gnm1.ann1.H4NKJU Arachis hypogaea HOM05D000104 ORTHO05D009920 1.4e-07 62.8 238 22.3
Nn5g26955 Nelumbo nucifera HOM05D000104 ORTHO05D009920 1.4e-07 62.8 221 23.5
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 1.9e-07 62.4 162 29.6
CiPaw.04G079400 Carya illinoinensis HOM05D005973 ORTHO05D007285 3.2e-07 61.6 160 25.0
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 3.2e-07 61.6 155 25.8
Nitab4.5_0000310g0140 Nicotiana tabacum HOM05D000891 ORTHO05D000761 3.2e-07 61.6 316 20.6
QL07p026858 Quercus lobata HOM05D006596 ORTHO05D008497 3.2e-07 61.6 174 21.3
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 4.2e-07 61.2 148 24.3
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 4.2e-07 61.2 148 24.3
vmacro13717 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 4.2e-07 61.2 189 20.1
Atru.BG.296.p Acer truncatum HOM05D005973 ORTHO05D007285 5.5e-07 60.8 183 27.3
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 5.5e-07 60.8 204 25.5
Nitab4.5_0005203g0030 Nicotiana tabacum HOM05D007893 ORTHO05D010042 5.5e-07 60.8 201 21.4
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 5.5e-07 60.8 152 25.0
BcaC05g25091 Brassica carinata HOM05D007686 ORTHO05D009709 7.2e-07 60.5 87 31.0
CAN.G805.2 Capsicum annuum HOM05D005764 ORTHO05D006600 7.2e-07 60.5 177 26.0
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 7.2e-07 60.5 164 26.2
GSVIVG01000864001 Vitis vinifera HOM05D005973 ORTHO05D007285 7.2e-07 60.5 179 25.7
arahy.Tifrunner.gnm1.ann1.JWX42Q Arachis hypogaea HOM05D000104 ORTHO05D009920 9.4e-07 60.1 238 21.8
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 9.4e-07 60.1 164 26.8
CANSAT80G1108 Cannabis sativa HOM05D002825 ORTHO05D003824 9.4e-07 60.1 125 30.4
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 1.2e-06 59.7 189 24.3
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 1.2e-06 59.7 221 26.2
SHI42089 Sapria himalayana HOM05D008459 ORTHO05D003903 1.2e-06 59.7 108 32.4
CiPaw.01G031400 Carya illinoinensis HOM05D006999 ORTHO05D008936 1.6e-06 59.3 263 25.1
Manes.01G252300 Manihot esculenta HOM05D003900 ORTHO05D005009 1.6e-06 59.3 99 34.3
vmacro13799 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 1.6e-06 59.3 121 28.1
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 2.1e-06 58.9 174 26.4
AUR62000309 Chenopodium quinoa HOM05D006174 ORTHO05D007987 2.1e-06 58.9 106 39.6
Gohir.D02G157000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 2.7e-06 58.5 86 31.4
QL06p044626 Quercus lobata HOM05D006999 ORTHO05D008936 2.7e-06 58.5 139 25.2
Aqoxy3G04282 Aquilegia oxysepala HOM05D000891 ORTHO05D000761 3.6e-06 58.2 143 26.6
Migut.I00174 Erythranthe guttata HOM05D002453 ORTHO05D002107 3.6e-06 58.2 164 24.4
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 3.6e-06 58.2 176 26.7
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 3.6e-06 58.2 173 26.6
Psat2g190400 Pisum sativum HOM05D000424 ORTHO05D000355 3.6e-06 58.2 144 20.1
Psat7g241480 Pisum sativum HOM05D005973 ORTHO05D007285 3.6e-06 58.2 179 25.7
QL09p040247 Quercus lobata HOM05D005973 ORTHO05D007285 3.6e-06 58.2 179 25.1
Carub.0001s1352 Capsella rubella HOM05D004824 ORTHO05D017526 4.7e-06 57.8 320 20.3
Cpa.g.sc211.34 Carica papaya HOM05D005764 ORTHO05D006600 4.7e-06 57.8 171 24.6
Medtr3g023180 Medicago truncatula HOM05D005973 ORTHO05D007285 6.1e-06 57.4 182 24.2
Nitab4.5_0013032g0040 Nicotiana tabacum HOM05D000891 ORTHO05D000761 6.1e-06 57.4 166 21.7
Phvul.005G033500 Phaseolus vulgaris HOM05D005973 ORTHO05D007285 6.1e-06 57.4 179 25.1
QL10p041196 Quercus lobata HOM05D005973 ORTHO05D007285 6.1e-06 57.4 179 25.1
Solyc02g067200.4 Solanum lycopersicum HOM05D006569 ORTHO05D007515 6.1e-06 57.4 104 26.9
arahy.Tifrunner.gnm1.ann1.UTK222 Arachis hypogaea HOM05D000104 ORTHO05D009920 7.9e-06 57.0 238 21.4
Ca_17359_v3 Cicer arietinum L. HOM05D002825 ORTHO05D003824 7.9e-06 57.0 121 30.6
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 7.9e-06 57.0 150 22.7
Prupe.2G122500 Prunus persica HOM05D000104 ORTHO05D009920 7.9e-06 57.0 222 23.0
Solyc01g068180.3 Solanum lycopersicum HOM05D005973 ORTHO05D007285 7.9e-06 57.0 175 24.0
Sopen02g016380 Solanum pennellii HOM05D006569 ORTHO05D007515 7.9e-06 57.0 104 26.9
PGSC0003DMG400025133 Solanum tuberosum HOM05D006569 ORTHO05D007515 7.9e-06 57.0 104 27.9


User provided reference genes

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