Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 2.3e-193 678.7 344 100.0
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 7.9e-141 504.2 320 79.1
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 7.9e-141 504.2 319 78.1
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 2.3e-140 502.7 318 77.7
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 3.3e-139 498.8 307 81.1
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 6.2e-138 494.6 307 78.2
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 6.2e-138 494.6 314 76.8
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 8.1e-138 494.2 306 78.1
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 2.4e-137 492.7 320 76.6
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 3.1e-137 492.3 299 81.3
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 6.9e-137 491.1 327 74.0
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 6.9e-137 491.1 325 75.1
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 9.0e-137 490.7 305 78.4
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 1.2e-136 490.3 324 75.0
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 4.5e-136 488.4 317 76.0
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 9.9e-136 487.3 323 75.2
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 9.9e-136 487.3 312 76.0
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 1.3e-135 486.9 319 75.2
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 3.8e-135 485.3 312 76.0
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 3.8e-135 485.3 315 76.8
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 4.9e-135 485.0 301 78.4
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.1e-134 483.8 316 74.4
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.4e-134 483.4 335 72.2
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 1.4e-134 483.4 328 73.5
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 1.4e-134 483.4 335 71.9
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 1.9e-134 483.0 295 79.7
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 1.9e-134 483.0 357 69.2
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 2.4e-134 482.6 316 75.9
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 2.4e-134 482.6 309 76.1
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 3.2e-134 482.3 315 75.6
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 3.2e-134 482.3 322 75.8
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 4.2e-134 481.9 308 76.0
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 7.1e-134 481.1 314 74.8
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 9.3e-134 480.7 322 73.9
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 9.3e-134 480.7 322 75.2
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 9.3e-134 480.7 312 74.4
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 9.3e-134 480.7 315 75.2
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 9.3e-134 480.7 309 75.4
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 1.2e-133 480.3 304 75.7
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 2.1e-133 479.6 312 76.9
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 2.1e-133 479.6 320 73.4
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 3.5e-133 478.8 313 74.1
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 3.5e-133 478.8 321 74.1
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 4.6e-133 478.4 325 72.6
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 6.0e-133 478.0 309 75.7
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 6.0e-133 478.0 323 72.1
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 6.0e-133 478.0 309 74.8
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 7.9e-133 477.6 303 78.5
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 1.8e-132 476.5 314 75.2
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 3.9e-132 475.3 316 75.9
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 5.1e-132 474.9 301 77.4
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 8.7e-132 474.2 297 76.8
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 8.7e-132 474.2 326 71.8
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 8.7e-132 474.2 327 73.1
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 1.5e-131 473.4 319 72.7
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 1.5e-131 473.4 301 76.4
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 1.9e-131 473.0 323 72.8
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 2.1e-130 469.5 302 75.8
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 3.7e-130 468.8 362 66.9
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 4.8e-130 468.4 315 73.7
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 6.2e-130 468.0 333 71.8
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 1.4e-129 466.8 305 74.4
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 2.4e-129 466.1 300 76.3
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 3.1e-129 465.7 311 75.6
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 9.0e-129 464.2 305 75.1
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 1.5e-128 463.4 360 66.7
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 2.0e-128 463.0 333 71.5
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 3.4e-128 462.2 335 71.0
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 7.6e-128 461.1 287 77.4
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 3.8e-127 458.8 308 72.4
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 1.2e-125 453.8 322 72.4
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 1.6e-125 453.4 301 74.4
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 2.1e-125 453.0 323 70.6
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 2.1e-125 453.0 343 69.1
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 2.7e-125 452.6 331 71.3
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 1.8e-124 449.9 309 71.8
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 2.3e-124 449.5 351 66.1
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 2.3e-124 449.5 351 66.1
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 4.3e-123 445.3 307 72.0
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 8.4e-119 431.0 344 66.6
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 1.1e-118 430.6 370 63.0
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 4.6e-117 425.2 289 73.4
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 3.0e-116 422.5 342 64.9
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.3e-114 417.2 301 69.4
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 2.2e-114 416.4 288 71.2
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 1.2e-112 410.6 323 64.7
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 1.2e-112 410.6 272 74.3
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 1.7e-111 406.8 328 62.5
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 6.7e-108 394.8 267 72.7
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 7.4e-107 391.3 281 68.7
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 3.4e-104 382.5 238 78.2
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 3.8e-103 379.0 268 72.4
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 1.9e-102 376.7 264 71.2
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 1.2e-101 374.0 298 60.1
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 1.4e-100 370.5 258 72.1
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 3.9e-100 369.0 326 57.1
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 8.8e-92 341.3 299 61.2
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 1.5e-91 340.5 200 80.5
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 8.2e-90 334.7 229 72.5
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 1.4e-89 334.0 229 72.1
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 4.1e-89 332.4 302 59.6
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 1.6e-88 330.5 205 78.5
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 4.7e-85 318.9 260 64.2
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 3.0e-84 316.2 352 50.6
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 1.3e-82 310.8 307 56.7
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 2.8e-82 309.7 200 75.5
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.6e-80 303.9 196 77.6
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 1.7e-79 300.4 320 54.4
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 2.0e-72 276.9 220 62.3
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 1.8e-68 263.8 137 94.9
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 2.0e-67 260.4 181 74.6
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 2.7e-64 250.0 286 48.6
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 2.8e-61 240.0 148 79.1
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 1.1e-57 228.0 131 82.4
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 4.7e-53 212.6 243 49.8
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 5.2e-52 209.1 160 64.4
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 5.8e-51 205.7 118 83.1
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 3.9e-47 193.0 120 79.2
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 1.1e-46 191.4 323 36.2
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 4.7e-45 186.0 120 76.7
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 2.3e-44 183.7 126 72.2
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 2.3e-44 183.7 126 72.2
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 2.4e-41 173.7 122 69.7
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 2.4e-41 173.7 196 52.6
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 1.1e-36 158.3 153 60.1
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 6.8e-36 155.6 160 57.5
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 2.2e-34 150.6 86 81.4
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 1.1e-20 105.1 115 52.2
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 2.0e-19 100.9 81 59.3
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 8.4e-18 95.5 96 55.2
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 1.3e-15 88.2 53 73.6
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 1.9e-14 84.3 80 53.8
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 1.9e-14 84.3 110 43.6
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 4.3e-14 83.2 55 70.9
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 2.1e-13 80.9 57 64.9
Lj1E297T0 Lonicera japonica HOM05D005534 ORTHO05D006642 2.5e-09 67.4 65 58.5
BraA07t29177Z Brassica rapa HOM05D005534 ORTHO05D006642 3.2e-09 67.0 140 34.3
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 3.2e-09 67.0 76 53.9
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 5.5e-09 66.2 140 32.9
Lj1A290T43 Lonicera japonica HOM05D005534 ORTHO05D006642 5.5e-09 66.2 35 82.9
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 7.1e-09 65.9 56 55.4
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 1.1e-06 58.5 36 77.8
TPR.G30727 Trifolium pratense HOM05D005534 ORTHO05D006642 7.4e-06 55.8 40 62.5


User provided reference genes

Program Settings