Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 3.4e-148 528.5 297 100.0
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 2.0e-140 502.7 298 96.0
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 3.4e-116 422.2 269 82.2
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 2.8e-70 269.6 249 59.0
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 1.3e-67 260.8 239 56.5
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 5.5e-66 255.4 245 57.1
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 9.4e-66 254.6 237 57.8
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 9.4e-66 254.6 208 62.5
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 9.4e-66 254.6 253 55.7
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 1.2e-65 254.2 253 55.7
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 1.2e-65 254.2 218 59.6
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 1.6e-65 253.8 269 53.2
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 2.7e-65 253.1 241 56.4
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 3.6e-65 252.7 246 56.5
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 3.6e-65 252.7 253 56.1
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 4.6e-65 252.3 243 57.2
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 4.6e-65 252.3 238 57.1
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 6.1e-65 251.9 237 57.4
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 7.9e-65 251.5 218 60.1
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 7.9e-65 251.5 259 53.3
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.0e-64 251.1 232 57.8
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.0e-64 251.1 248 56.0
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 1.4e-64 250.8 230 57.4
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 1.8e-64 250.4 258 55.8
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 2.3e-64 250.0 211 60.7
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 2.3e-64 250.0 225 58.7
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 3.0e-64 249.6 245 56.3
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 3.0e-64 249.6 231 56.3
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 3.9e-64 249.2 230 57.8
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 3.9e-64 249.2 242 55.8
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 3.9e-64 249.2 210 58.6
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 5.1e-64 248.8 225 56.9
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 5.1e-64 248.8 258 52.7
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 5.1e-64 248.8 239 57.3
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 6.7e-64 248.4 210 61.0
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 6.7e-64 248.4 245 56.3
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 8.8e-64 248.1 239 58.2
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 1.1e-63 247.7 223 57.0
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 1.5e-63 247.3 270 51.5
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 1.5e-63 247.3 235 56.6
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 1.5e-63 247.3 245 55.1
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 1.5e-63 247.3 223 56.5
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 2.0e-63 246.9 236 54.7
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.0e-63 246.9 211 60.2
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 2.0e-63 246.9 211 59.7
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 2.5e-63 246.5 239 58.2
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 2.5e-63 246.5 238 58.4
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 2.5e-63 246.5 210 59.0
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 3.3e-63 246.1 211 59.7
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 3.3e-63 246.1 207 61.4
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 3.3e-63 246.1 262 53.1
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 3.3e-63 246.1 218 60.1
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 4.3e-63 245.7 218 59.2
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 4.3e-63 245.7 230 57.4
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 4.3e-63 245.7 216 57.9
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 7.4e-63 245.0 251 53.8
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 7.4e-63 245.0 216 60.6
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 1.3e-62 244.2 237 54.9
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 1.3e-62 244.2 211 58.8
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 2.2e-62 243.4 211 58.8
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 2.2e-62 243.4 211 59.2
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 2.2e-62 243.4 263 52.9
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 6.3e-62 241.9 230 55.2
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 6.3e-62 241.9 233 55.8
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 8.2e-62 241.5 225 56.9
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.1e-61 241.1 234 53.4
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 1.1e-61 241.1 256 53.9
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 1.8e-61 240.4 218 59.2
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 1.8e-61 240.4 218 57.8
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 1.8e-61 240.4 235 56.6
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 3.1e-61 239.6 226 54.9
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 4.1e-61 239.2 207 58.5
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 5.3e-61 238.8 236 54.7
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 5.3e-61 238.8 267 50.6
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 6.9e-61 238.4 236 55.1
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 6.9e-61 238.4 243 55.1
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 9.1e-61 238.0 240 54.6
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 9.1e-61 238.0 242 54.1
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 9.1e-61 238.0 243 55.1
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 9.1e-61 238.0 243 55.1
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 9.1e-61 238.0 263 49.8
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 1.2e-60 237.7 215 58.6
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 1.5e-60 237.3 210 60.0
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 1.5e-60 237.3 242 55.0
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 2.0e-60 236.9 220 57.7
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 2.0e-60 236.9 249 51.4
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 2.6e-60 236.5 210 60.5
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 2.6e-60 236.5 212 55.2
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 3.4e-60 236.1 245 53.9
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 3.4e-60 236.1 236 54.2
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 3.4e-60 236.1 244 51.2
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 4.5e-60 235.7 211 57.3
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 7.7e-60 235.0 211 57.3
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 7.7e-60 235.0 211 57.3
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 7.7e-60 235.0 244 51.2
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 1.0e-59 234.6 220 57.3
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 1.0e-59 234.6 220 57.3
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 1.7e-59 233.8 210 58.6
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.2e-59 233.4 235 54.5
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 2.9e-59 233.0 213 57.3
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 3.8e-59 232.6 200 60.0
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.4e-58 230.7 210 56.7
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 1.4e-58 230.7 211 55.5
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 2.5e-58 229.9 207 56.0
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 2.5e-58 229.9 174 64.4
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 3.2e-58 229.6 198 59.6
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 5.5e-58 228.8 210 57.6
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 1.2e-57 227.6 175 63.4
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 1.6e-57 227.3 230 54.8
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 2.1e-57 226.9 183 61.7
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 3.6e-57 226.1 214 54.2
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 4.7e-57 225.7 185 62.2
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 7.9e-57 224.9 236 48.7
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 7.9e-57 224.9 175 64.0
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.4e-56 224.2 177 62.1
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 1.4e-56 224.2 200 57.0
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 3.3e-55 219.5 199 58.8
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 7.4e-55 218.4 175 61.7
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.8e-54 216.5 227 52.4
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 1.1e-50 204.5 170 58.8
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 3.6e-49 199.5 171 57.9
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 8.0e-49 198.4 170 57.6
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 1.8e-48 197.2 193 56.5
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 2.3e-48 196.8 181 56.4
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 3.3e-47 193.0 233 48.5
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 8.2e-46 188.3 167 59.9
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.2e-44 184.5 235 47.2
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 2.9e-43 179.9 232 48.7
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 1.2e-41 174.5 174 54.6
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 1.2e-41 174.5 174 54.6
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.3e-38 164.5 214 42.1
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 2.4e-37 160.2 125 62.4
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 1.0e-35 154.8 181 47.5
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 1.5e-34 151.0 239 42.3
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 5.5e-34 149.1 104 67.3
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 1.2e-33 147.9 183 47.0
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 8.0e-33 145.2 223 43.0
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 1.7e-30 137.5 111 60.4
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 9.5e-26 121.7 84 67.9
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 3.6e-25 119.8 111 55.9
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 1.0e-24 118.2 156 41.7
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 3.2e-21 106.7 183 38.8
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 1.3e-19 101.3 176 37.5
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 2.5e-18 97.1 235 34.5
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 4.3e-18 96.3 70 67.1
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 6.1e-17 92.4 175 36.6
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.8e-16 90.9 60 73.3
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 1.1e-13 81.6 92 50.0
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 4.1e-13 79.7 60 63.3
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 9.5e-10 68.6 88 42.0
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 3.1e-08 63.5 138 32.6
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 2.2e-06 57.4 36 66.7


User provided reference genes

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