Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb409580 Zea mays HOM05D007388 ORTHO05D009421 7.4e-122 440.7 238 100.0
Os12g0498500 Oryza sativa ssp. japonica HOM05D007388 ORTHO05D009421 1.3e-81 307.0 245 73.9
QL02p016663 Quercus lobata HOM05D007388 ORTHO05D009421 1.6e-44 183.7 148 63.5
PGR044G0912 Punica granatum HOM05D007388 ORTHO05D009421 2.1e-44 183.3 172 57.0
Nn8g38703 Nelumbo nucifera HOM05D007388 ORTHO05D009421 3.6e-44 182.6 174 56.9
ATR0598G070 Amborella trichopoda HOM05D007388 ORTHO05D009421 8.1e-44 181.4 148 62.2
AUR62020582 Chenopodium quinoa HOM05D007388 ORTHO05D009421 1.8e-43 180.3 148 62.8
Sabra06G0171500 Salix brachista HOM05D007388 ORTHO05D009421 2.3e-43 179.9 176 55.1
Eucgr.C03150 Eucalyptus grandis HOM05D007388 ORTHO05D009421 8.9e-43 177.9 145 62.8
Potri.006G221900 Populus trichocarpa HOM05D007388 ORTHO05D009421 1.2e-42 177.6 176 55.1
MSTRG.25983 Avicennia marina HOM05D007388 ORTHO05D009421 2.6e-42 176.4 212 51.4
Lalb_Chr11g0063321 Lupinus albus HOM05D007388 ORTHO05D009421 2.6e-42 176.4 148 60.1
Peaxi162Scf00596g00105 Petunia axillaris HOM05D007388 ORTHO05D009421 4.4e-42 175.6 148 62.2
Carub.0006s1952 Capsella rubella HOM05D007388 ORTHO05D009421 5.8e-42 175.3 174 54.6
MBI19_g11844_MAGBIO Magnolia biondii HOM05D007388 ORTHO05D009421 7.5e-42 174.9 149 61.7
TAR383G1008 Trochodendron aralioides HOM05D007388 ORTHO05D009421 1.7e-41 173.7 177 53.7
AUR62009088 Chenopodium quinoa HOM05D007388 ORTHO05D009421 2.2e-41 173.3 148 60.8
Nitab4.5_0001705g0020 Nicotiana tabacum HOM05D007388 ORTHO05D009421 2.9e-41 172.9 147 60.5
Atru.chr7.1857 Acer truncatum HOM05D007388 ORTHO05D009421 3.7e-41 172.6 168 57.1
Ciclev10009451m.g Citrus clementina HOM05D007388 ORTHO05D009421 1.1e-40 171.0 166 56.6
COL.COLO4_21128 Corchorus olitorius HOM05D007388 ORTHO05D009421 1.1e-40 171.0 147 61.9
BcaC04g19512 Brassica carinata HOM05D007388 ORTHO05D009421 2.4e-40 169.9 174 52.9
A10p18840 Brassica napus HOM05D007388 ORTHO05D009421 2.4e-40 169.9 174 52.9
C09p54850 Brassica napus HOM05D007388 ORTHO05D009421 2.4e-40 169.9 174 52.9
BolC9t58346H Brassica oleracea HOM05D007388 ORTHO05D009421 2.4e-40 169.9 174 52.9
BraA10t43964Z Brassica rapa HOM05D007388 ORTHO05D009421 2.4e-40 169.9 174 52.9
MELO3C016910.2 Cucumis melo HOM05D007388 ORTHO05D009421 2.4e-40 169.9 143 60.1
MD15G1051600 Malus domestica HOM05D007388 ORTHO05D009421 3.2e-40 169.5 156 57.1
GSVIVG01035454001 Vitis vinifera HOM05D007388 ORTHO05D009421 3.2e-40 169.5 147 61.2
Sed0027665 Sechium edule HOM05D007388 ORTHO05D009421 4.1e-40 169.1 161 55.3
CARHR191660 Cardamine hirsuta HOM05D007388 ORTHO05D009421 5.4e-40 168.7 163 54.6
AL6G32850 Arabidopsis lyrata HOM05D007388 ORTHO05D009421 7.1e-40 168.3 173 52.6
CSS0004113 Camellia sinensis var. sinensis HOM05D007388 ORTHO05D009421 1.6e-39 167.2 145 57.2
Dinv41838 Davidia involucrata HOM05D007388 ORTHO05D009421 1.6e-39 167.2 151 59.6
ECA240G1505 Erigeron canadensis HOM05D007388 ORTHO05D009421 1.6e-39 167.2 179 52.0
AT5G21430 Arabidopsis thaliana HOM05D007388 ORTHO05D009421 2.1e-39 166.8 177 53.7
CDE06G1148 Ceratophyllum demersum HOM05D007388 ORTHO05D009421 2.1e-39 166.8 151 57.6
Migut.A00083 Erythranthe guttata HOM05D007388 ORTHO05D009421 2.1e-39 166.8 147 59.9
THA.LOC104799581 Tarenaya hassleriana HOM05D007388 ORTHO05D009421 3.5e-39 166.0 164 55.5
BcaB08g36472 Brassica carinata HOM05D007388 ORTHO05D009421 4.6e-39 165.6 166 53.6
Aa31LG1G13520 Aethionema arabicum HOM05D007388 ORTHO05D009421 6.0e-39 165.2 182 52.7
Cfa018015 Carpinus fangiana HOM05D007388 ORTHO05D009421 6.0e-39 165.2 173 53.8
Manes.16G084900 Manihot esculenta HOM05D007388 ORTHO05D009421 6.0e-39 165.2 147 56.5
ClCG05G015710 Citrullus lanatus HOM05D007388 ORTHO05D009421 1.3e-38 164.1 161 55.9
FvH4_2g31130 Fragaria vesca HOM05D007388 ORTHO05D009421 2.3e-38 163.3 145 57.2
Gohir.A05G039100 Gossypium hirsutum HOM05D007388 ORTHO05D009421 2.3e-38 163.3 164 53.7
Thhalv10014636m.g Eutrema salsugineum HOM05D007388 ORTHO05D009421 3.0e-38 162.9 174 50.6
RcHm_v2.0_Chr6g0311651 Rosa chinensis HOM05D007388 ORTHO05D009421 3.0e-38 162.9 149 56.4
Solyc06g082970.3 Solanum lycopersicum HOM05D007388 ORTHO05D009421 3.0e-38 162.9 145 59.3
PGSC0003DMG400027673 Solanum tuberosum HOM05D007388 ORTHO05D009421 3.0e-38 162.9 164 55.5
Duzib168G1804 Durio zibethinus HOM05D007388 ORTHO05D009421 3.9e-38 162.5 147 57.8
CsaV3_4G036020 Cucumis sativus L. HOM05D007388 ORTHO05D009421 5.1e-38 162.2 224 46.4
Sopen06g034360 Solanum pennellii HOM05D007388 ORTHO05D009421 5.1e-38 162.2 145 59.3
Psat5g102720 Pisum sativum HOM05D007388 ORTHO05D009421 6.6e-38 161.8 143 55.9
FAN24G3326 Fragaria x ananassa HOM05D007388 ORTHO05D009421 1.5e-37 160.6 145 56.6
HanXRQChr04g0097861 Helianthus annuus HOM05D007388 ORTHO05D009421 1.5e-37 160.6 181 53.0
CAN.G246.5 Capsicum annuum HOM05D007388 ORTHO05D009421 1.9e-37 160.2 175 53.1
Gohir.D05G040600 Gossypium hirsutum HOM05D007388 ORTHO05D009421 1.9e-37 160.2 164 53.0
Sp6g23310 Schrenkiella parvula HOM05D007388 ORTHO05D009421 2.5e-37 159.8 191 49.2
TWI63G1062 Tripterygium wilfordii HOM05D007388 ORTHO05D009421 3.3e-37 159.5 161 53.4
CANSAT25G2576 Cannabis sativa HOM05D007388 ORTHO05D009421 5.6e-37 158.7 149 58.4
Glyma.06G055600 Glycine max HOM05D007388 ORTHO05D009421 5.6e-37 158.7 145 58.6
Glyma.04G055400 Glycine max HOM05D007388 ORTHO05D009421 9.5e-37 157.9 174 54.0
Atru.BG.20.p Acer truncatum HOM05D007388 ORTHO05D009421 1.2e-36 157.5 128 62.5
CiPaw.16G070200 Carya illinoinensis HOM05D007388 ORTHO05D009421 1.2e-36 157.5 174 49.4
VMungo1309G3057 Vigna mungo HOM05D007388 ORTHO05D009421 2.1e-36 156.8 148 57.4
Lj1g0010451 Lotus japonicus HOM05D007388 ORTHO05D009421 2.8e-36 156.4 158 52.5
FAN20G0472 Fragaria x ananassa HOM05D007388 ORTHO05D009421 3.6e-36 156.0 219 44.7
PSO421G0687 Papaver somniferum HOM05D007388 ORTHO05D009421 4.7e-36 155.6 164 50.6
Medtr3g104980 Medicago truncatula HOM05D007388 ORTHO05D009421 1.1e-35 154.5 143 55.9
DCAR_003716 Daucus carota HOM05D007388 ORTHO05D009421 1.4e-35 154.1 147 55.8
TPR.G3529 Trifolium pratense HOM05D007388 ORTHO05D009421 2.4e-35 153.3 143 53.1
Actinidia25694 Actinidia chinensis HOM05D007388 ORTHO05D009421 1.5e-34 150.6 146 52.7
Rhsim10G0152000 Rhododendron simsii HOM05D007388 ORTHO05D009421 2.0e-34 150.2 137 53.3
Phvul.009G081500 Phaseolus vulgaris HOM05D007388 ORTHO05D009421 3.4e-34 149.4 148 54.7
EL10Ac2g03792 Beta vulgaris HOM05D007388 ORTHO05D009421 4.4e-34 149.1 151 53.6
FAN27G0155 Fragaria x ananassa HOM05D007388 ORTHO05D009421 2.2e-33 146.7 238 40.8
Lj7C227T7 Lonicera japonica HOM05D007388 ORTHO05D009421 2.9e-33 146.4 147 53.1
CDE07G0202 Ceratophyllum demersum HOM05D007388 ORTHO05D001048 5.4e-32 142.1 151 50.3
Oeu000765.1 Olea europaea HOM05D007388 ORTHO05D009421 4.6e-31 139.0 251 38.6
Thecc.09G062100 Theobroma cacao HOM05D007388 ORTHO05D009421 4.6e-31 139.0 208 44.2
arahy.Tifrunner.gnm1.ann1.P6UV73 Arachis hypogaea HOM05D007388 ORTHO05D009421 6.0e-31 138.7 187 42.8
Aqoxy7G01075 Aquilegia oxysepala HOM05D007388 ORTHO05D009421 1.3e-30 137.5 113 62.8
Lj7C225T7 Lonicera japonica HOM05D007388 ORTHO05D009421 7.3e-29 131.7 147 49.7
arahy.Tifrunner.gnm1.ann1.044LWD Arachis hypogaea HOM05D000560 ORTHO05D000417 2.1e-28 130.2 173 45.7
Gorai.009G041100 Gossypium raimondii HOM05D007388 ORTHO05D009421 2.8e-28 129.8 137 51.8
Nitab4.5_0000268g0090 Nicotiana tabacum HOM05D007388 ORTHO05D009421 3.6e-28 129.4 172 45.3
Cc08_g01260 Coffea canephora HOM05D007388 ORTHO05D009421 5.3e-27 125.6 141 53.2
Lsat_1_v5_gn_7_58400 Lactuca sativa HOM05D007388 ORTHO05D009421 5.3e-27 125.6 142 50.0
Prupe.1G405600 Prunus persica HOM05D007388 ORTHO05D009421 4.4e-26 122.5 144 50.0
vmacro12914 Vaccinium macrocarpon HOM05D007388 ORTHO05D009421 7.6e-26 121.7 146 43.8
Ca_15836_v3 Cicer arietinum L. HOM05D007388 ORTHO05D009421 1.4e-24 117.5 113 53.1
AagrBONN_evm.TU.Sc2ySwM_368.3296 Anthoceros agrestis HOM05D007388 ORTHO05D009421 4.0e-19 99.4 200 36.0
Pp3c4_14700 Physcomitrium patens HOM05D007388 ORTHO05D009421 4.5e-18 95.9 208 35.6
Pp3c12_9640 Physcomitrium patens HOM05D007388 ORTHO05D009421 2.2e-17 93.6 211 34.6
unitig_4.g30329 Utricularia gibba HOM05D007388 ORTHO05D009421 6.7e-14 82.0 147 41.5
Mapoly0129s0003 Marchantia polymorpha HOM05D007388 ORTHO05D009421 4.0e-11 72.8 149 35.6
SMO223G0044 Selaginella moellendorffii HOM05D007480 ORTHO05D009460 6.4e-09 65.5 104 37.5
BNapus_Darmor_BZH_scaffold_38p01020 Brassica napus HOM05D007388 ORTHO05D009421 8.4e-09 65.1 63 50.8
Hma1.2p1_0231F.1_g097390 Hydrangea macrophylla HOM05D007388 ORTHO05D009421 5.5e-08 62.4 103 42.7


User provided reference genes

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