Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 1.9e-130 469.2 239 100.0
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 4.0e-59 232.3 214 62.1
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 3.2e-40 169.5 209 48.8
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 8.7e-38 161.4 209 47.8
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 1.9e-37 160.2 209 46.9
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 1.9e-37 160.2 209 47.8
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 4.3e-37 159.1 209 47.8
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 2.8e-36 156.4 210 47.6
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 8.1e-36 154.8 209 46.9
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 1.1e-35 154.5 210 46.2
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 1.4e-35 154.1 209 46.4
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 3.1e-35 152.9 209 46.4
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 6.9e-35 151.8 209 45.5
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 9.0e-35 151.4 209 45.5
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 1.5e-34 150.6 209 45.5
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 1.5e-34 150.6 209 45.9
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 2.0e-34 150.2 214 46.3
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 2.6e-34 149.8 208 45.7
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 5.8e-34 148.7 209 45.0
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 5.8e-34 148.7 209 46.9
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 7.6e-34 148.3 209 45.9
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 1.3e-33 147.5 209 45.5
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 1.7e-33 147.1 210 48.1
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.2e-33 146.7 186 47.8
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 2.2e-33 146.7 209 45.5
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 2.9e-33 146.4 215 44.7
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 3.8e-33 146.0 209 46.4
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 3.8e-33 146.0 242 42.1
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 4.9e-33 145.6 211 45.5
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 6.4e-33 145.2 210 43.8
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 6.4e-33 145.2 209 45.9
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 8.4e-33 144.8 210 45.2
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 8.4e-33 144.8 209 45.5
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.1e-32 144.4 211 44.5
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 1.4e-32 144.1 209 45.9
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 1.9e-32 143.7 209 44.5
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 2.4e-32 143.3 206 47.6
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.4e-32 143.3 209 45.0
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 3.2e-32 142.9 208 44.2
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 4.2e-32 142.5 209 45.0
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 4.2e-32 142.5 214 43.9
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 7.1e-32 141.7 205 44.4
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 9.3e-32 141.4 209 44.0
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.2e-31 141.0 209 44.5
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.2e-31 141.0 209 44.0
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 1.6e-31 140.6 208 43.3
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 1.6e-31 140.6 209 43.1
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 2.1e-31 140.2 204 44.1
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 2.1e-31 140.2 209 45.5
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 3.5e-31 139.4 210 44.3
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 6.0e-31 138.7 215 45.6
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.0e-31 138.7 214 43.0
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 6.0e-31 138.7 213 42.7
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 6.0e-31 138.7 214 46.3
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 6.0e-31 138.7 209 43.1
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 1.0e-30 137.9 152 50.0
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 1.0e-30 137.9 210 43.8
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 1.8e-30 137.1 209 44.5
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 1.8e-30 137.1 212 42.5
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 2.3e-30 136.7 209 44.0
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 2.3e-30 136.7 151 49.7
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 2.3e-30 136.7 211 44.1
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.3e-30 136.7 216 43.5
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 3.0e-30 136.3 149 49.7
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.0e-30 136.3 213 42.3
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 3.9e-30 136.0 214 43.0
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 5.1e-30 135.6 156 51.3
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 5.1e-30 135.6 209 42.6
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 6.7e-30 135.2 154 50.0
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 8.7e-30 134.8 218 41.7
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.1e-29 134.4 215 43.3
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.1e-29 134.4 211 42.2
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.1e-29 134.4 149 49.0
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.5e-29 134.0 208 44.2
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 1.5e-29 134.0 208 43.8
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 1.5e-29 134.0 215 46.0
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 1.5e-29 134.0 149 48.3
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 1.9e-29 133.7 214 41.1
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 2.5e-29 133.3 215 40.5
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 4.3e-29 132.5 215 40.5
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 4.3e-29 132.5 209 43.1
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 7.4e-29 131.7 214 42.1
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 9.6e-29 131.3 149 48.3
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.3e-28 131.0 215 41.4
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 2.8e-28 129.8 210 39.5
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 2.8e-28 129.8 210 39.5
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 2.8e-28 129.8 210 39.5
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 8.1e-28 128.3 215 41.9
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 3.1e-27 126.3 209 44.5
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 4.0e-27 125.9 215 38.6
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 4.0e-27 125.9 216 40.7
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 5.3e-27 125.6 209 41.1
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 5.3e-27 125.6 209 41.6
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 1.2e-26 124.4 152 47.4
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.5e-26 124.0 209 41.6
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 1.5e-26 124.0 210 45.2
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 1.5e-26 124.0 209 39.7
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 2.6e-26 123.2 215 40.0
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 5.8e-26 122.1 220 37.7
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 5.8e-26 122.1 220 37.7
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 7.6e-26 121.7 208 39.4
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 9.9e-26 121.3 211 39.3
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 1.7e-25 120.6 241 36.1
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 2.2e-25 120.2 210 43.3
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 2.2e-25 120.2 215 38.1
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 2.9e-25 119.8 208 40.4
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 8.4e-25 118.2 208 38.0
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 8.4e-25 118.2 208 38.0
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 1.1e-24 117.9 208 39.9
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 1.9e-24 117.1 161 44.1
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 3.2e-24 116.3 211 37.4
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 3.2e-24 116.3 165 45.5
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 5.5e-24 115.5 183 44.3
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 1.2e-23 114.4 151 43.7
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 1.6e-23 114.0 209 40.7
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 2.1e-23 113.6 162 46.3
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 2.7e-23 113.2 209 38.3
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 3.5e-23 112.8 216 39.8
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 1.0e-22 111.3 212 37.7
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 1.0e-22 111.3 212 40.6
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 1.8e-22 110.5 209 37.8
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 1.8e-22 110.5 208 37.0
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 3.9e-22 109.4 212 37.7
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 5.1e-22 109.0 181 41.4
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 6.7e-22 108.6 134 48.5
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 1.1e-21 107.8 115 48.7
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 1.5e-21 107.5 208 37.5
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 1.5e-21 107.5 209 36.4
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 1.9e-21 107.1 215 37.7
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 1.9e-21 107.1 149 45.0
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 2.5e-21 106.7 208 37.0
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 2.5e-21 106.7 210 36.7
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 5.6e-21 105.5 208 37.0
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 2.1e-20 103.6 208 35.1
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 4.8e-20 102.4 210 35.2
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 4.8e-20 102.4 210 35.7
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.4e-19 100.9 135 43.0
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 2.4e-19 100.1 185 41.1
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 6.9e-19 98.6 214 36.0
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 6.9e-19 98.6 85 62.4
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 6.9e-19 98.6 211 38.9
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 9.0e-19 98.2 160 38.8
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 9.0e-19 98.2 216 36.6
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 1.2e-18 97.8 146 40.4
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.3e-17 94.4 211 37.0
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 3.2e-16 89.7 162 39.5
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 9.3e-16 88.2 150 40.7
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 6.0e-15 85.5 211 36.5
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 2.3e-14 83.6 107 45.8
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 3.9e-14 82.8 160 36.2
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 5.1e-14 82.4 208 36.5
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 8.2e-12 75.1 103 39.8
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 1.3e-09 67.8 212 34.4
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 7.2e-08 62.0 54 61.1
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 2.1e-07 60.5 60 53.3


User provided reference genes

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