Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb408770 Zea mays HOM05D004023 ORTHO05D004681 1.0e-66 256.5 122 100.0
Zm00001eb401920 Zea mays HOM05D004023 ORTHO05D004681 2.2e-53 212.2 106 96.2
Zm00001eb401960 Zea mays HOM05D004023 ORTHO05D004681 2.2e-53 212.2 106 96.2
Os03g0177000 Oryza sativa ssp. japonica HOM05D004023 ORTHO05D004681 3.5e-43 178.3 105 78.1
CDE05G3056 Ceratophyllum demersum HOM05D004023 ORTHO05D004681 7.6e-30 134.0 106 57.5
Atru.chr7.1700 Acer truncatum HOM05D004023 ORTHO05D004681 3.2e-28 128.6 114 54.4
Thecc.09G077600 Theobroma cacao HOM05D004023 ORTHO05D004681 9.3e-28 127.1 106 57.5
CiPaw.03G206900 Carya illinoinensis HOM05D004023 ORTHO05D004681 2.1e-27 125.9 106 58.5
Cfa002993 Carpinus fangiana HOM05D004023 ORTHO05D004681 2.7e-27 125.6 102 57.8
MELO3C015518.2 Cucumis melo HOM05D004023 ORTHO05D004681 2.7e-27 125.6 104 56.7
CsaV3_1G041000 Cucumis sativus L. HOM05D004023 ORTHO05D004681 3.5e-27 125.2 102 57.8
ATR0598G151 Amborella trichopoda HOM05D004023 ORTHO05D004681 1.0e-26 123.6 119 50.4
CSS0012197 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 1.0e-26 123.6 111 53.2
Haze_26009 Corylus avellana HOM05D004023 ORTHO05D004681 1.3e-26 123.2 102 56.9
Gohir.A06G076200 Gossypium hirsutum HOM05D004023 ORTHO05D004681 1.3e-26 123.2 102 56.9
Gohir.D06G075200 Gossypium hirsutum HOM05D004023 ORTHO05D004681 1.3e-26 123.2 102 56.9
Gorai.010G088100 Gossypium raimondii HOM05D004023 ORTHO05D004681 1.3e-26 123.2 102 56.9
ATR1096G005 Amborella trichopoda HOM05D004023 ORTHO05D004681 2.3e-26 122.5 109 58.7
MBI13_g42818_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 2.3e-26 122.5 106 53.8
Ciclev10009135m.g Citrus clementina HOM05D004023 ORTHO05D004681 3.0e-26 122.1 114 50.9
TAR383G0448 Trochodendron aralioides HOM05D004023 ORTHO05D004681 3.9e-26 121.7 102 56.9
CSS0007502 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 1.1e-25 120.2 102 54.9
CSS0019806 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 1.1e-25 120.2 102 54.9
Dinv42390 Davidia involucrata HOM05D004023 ORTHO05D004681 1.5e-25 119.8 104 53.8
EL10Ac8g19063 Beta vulgaris HOM05D004023 ORTHO05D004681 1.9e-25 119.4 104 52.9
Sp3g24610 Schrenkiella parvula HOM05D004023 ORTHO05D004681 2.5e-25 119.0 102 54.9
Aa31sc133G50 Aethionema arabicum HOM05D004023 ORTHO05D004681 4.3e-25 118.2 102 55.9
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 4.3e-25 118.2 102 53.9
AL3G43670 Arabidopsis lyrata HOM05D004023 ORTHO05D004681 5.6e-25 117.9 102 53.9
CSS0006992 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 5.6e-25 117.9 102 53.9
AT2G06025 Arabidopsis thaliana HOM05D004023 ORTHO05D004681 7.3e-25 117.5 102 53.9
Ca_23416_v3 Cicer arietinum L. HOM05D004023 ORTHO05D004681 7.3e-25 117.5 102 52.9
Lalb_Chr08g0232581 Lupinus albus HOM05D004023 ORTHO05D004681 7.3e-25 117.5 102 53.9
SEGI_14760 Sequoiadendron giganteum HOM05D004023 ORTHO05D004681 7.3e-25 117.5 109 56.0
HPP92_013291 Vanilla planifolia HOM05D004023 ORTHO05D004681 7.3e-25 117.5 107 48.6
VMungo1309G2832 Vigna mungo HOM05D004023 ORTHO05D004681 7.3e-25 117.5 118 48.3
Eucgr.C00816 Eucalyptus grandis HOM05D004023 ORTHO05D004681 9.6e-25 117.1 102 49.0
DCAR_006328 Daucus carota HOM05D004023 ORTHO05D004681 1.3e-24 116.7 107 55.1
PGR142G0045 Punica granatum HOM05D004023 ORTHO05D004681 1.3e-24 116.7 102 54.9
Hund08779 Selenicereus undatus HOM05D004023 ORTHO05D004681 1.6e-24 116.3 119 47.1
BcaB06g26883 Brassica carinata HOM05D004023 ORTHO05D004681 2.1e-24 115.9 102 53.9
C07p09330 Brassica napus HOM05D004023 ORTHO05D004681 2.1e-24 115.9 102 53.9
BolC7t41351H Brassica oleracea HOM05D004023 ORTHO05D004681 2.1e-24 115.9 102 53.9
Carub.0003s2716 Capsella rubella HOM05D004023 ORTHO05D004681 2.1e-24 115.9 102 53.9
PGR119G0815 Punica granatum HOM05D004023 ORTHO05D004681 2.1e-24 115.9 107 56.1
TPR.G28584 Trifolium pratense HOM05D004023 ORTHO05D004681 2.1e-24 115.9 102 51.0
BcaC06g35952 Brassica carinata HOM05D004023 ORTHO05D004681 2.8e-24 115.5 102 53.9
A07p06280 Brassica napus HOM05D004023 ORTHO05D004681 2.8e-24 115.5 102 53.9
BraA07t28423Z Brassica rapa HOM05D004023 ORTHO05D004681 2.8e-24 115.5 102 53.9
Phvul.009G227400 Phaseolus vulgaris HOM05D004023 ORTHO05D004681 2.8e-24 115.5 118 48.3
QL11p000695 Quercus lobata HOM05D004023 ORTHO05D004681 2.8e-24 115.5 106 52.8
Thhalv10002632m.g Eutrema salsugineum HOM05D004023 ORTHO05D004681 3.6e-24 115.2 102 52.9
PSO384G4677 Papaver somniferum HOM05D004023 ORTHO05D004681 3.6e-24 115.2 107 57.9
Psat1g134240 Pisum sativum HOM05D004023 ORTHO05D004681 4.8e-24 114.8 111 47.7
Ah.03g147260 Amaranthus hybridus HOM05D004023 ORTHO05D004681 6.2e-24 114.4 107 57.0
Nitab4.5_0005767g0010 Nicotiana tabacum HOM05D004023 ORTHO05D004681 6.2e-24 114.4 113 48.7
THA.LOC104826588 Tarenaya hassleriana HOM05D004023 ORTHO05D004681 6.2e-24 114.4 102 53.9
CARHR103710 Cardamine hirsuta HOM05D004023 ORTHO05D004681 8.1e-24 114.0 102 52.9
AUR62003487 Chenopodium quinoa HOM05D004023 ORTHO05D004681 8.1e-24 114.0 108 54.6
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 8.1e-24 114.0 105 53.3
Medtr2g041620 Medicago truncatula HOM05D004023 ORTHO05D004681 8.1e-24 114.0 102 50.0
Potri.006G142100 Populus trichocarpa HOM05D004023 ORTHO05D004681 1.1e-23 113.6 102 55.9
Sed0007208 Sechium edule HOM05D004023 ORTHO05D004681 1.1e-23 113.6 102 52.0
PGSC0003DMG400027761 Solanum tuberosum HOM05D004023 ORTHO05D004681 1.1e-23 113.6 102 52.0
TAR369G0443 Trochodendron aralioides HOM05D004023 ORTHO05D004681 1.1e-23 113.6 107 55.1
Actinidia29930 Actinidia chinensis HOM05D004023 ORTHO05D004681 1.4e-23 113.2 118 50.8
Aqoxy7G01044 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 1.4e-23 113.2 108 50.9
AUR62017796 Chenopodium quinoa HOM05D004023 ORTHO05D004681 1.4e-23 113.2 104 55.8
Lj6g0013866 Lotus japonicus HOM05D004023 ORTHO05D004681 1.4e-23 113.2 102 51.0
MD15G1217100 Malus domestica HOM05D004023 ORTHO05D004681 1.4e-23 113.2 118 50.8
AUR62025247 Chenopodium quinoa HOM05D004023 ORTHO05D004681 2.4e-23 112.5 104 50.0
Nitab4.5_0011805g0030 Nicotiana tabacum HOM05D004023 ORTHO05D004681 2.4e-23 112.5 107 54.2
SalBow6G6388 Salvia bowleyana HOM05D004023 ORTHO05D004681 2.4e-23 112.5 109 51.4
unitig_0.g313 Utricularia gibba HOM05D004023 ORTHO05D004681 2.4e-23 112.5 106 54.7
GSVIVG01037415001 Vitis vinifera HOM05D004023 ORTHO05D004681 2.4e-23 112.5 106 55.7
AUR62028938 Chenopodium quinoa HOM05D004023 ORTHO05D004681 3.1e-23 112.1 104 50.0
Lj2C939G1 Lonicera japonica HOM05D004023 ORTHO05D004681 3.1e-23 112.1 109 54.1
DCAR_024747 Daucus carota HOM05D004023 ORTHO05D004681 4.0e-23 111.7 100 51.0
DCAR_031922 Daucus carota HOM05D004023 ORTHO05D004681 4.0e-23 111.7 100 51.0
Hma1.2p1_1711F.1_g298750 Hydrangea macrophylla HOM05D004023 ORTHO05D004681 4.0e-23 111.7 106 56.6
Glyma.15G177500 Glycine max HOM05D004023 ORTHO05D004681 5.3e-23 111.3 102 51.0
arahy.Tifrunner.gnm1.ann1.XHC94G Arachis hypogaea HOM05D004023 ORTHO05D004681 6.9e-23 110.9 102 48.0
CAN.G484.8 Capsicum annuum HOM05D004023 ORTHO05D004681 6.9e-23 110.9 107 53.3
Nitab4.5_0001925g0260 Nicotiana tabacum HOM05D004023 ORTHO05D004681 6.9e-23 110.9 107 52.3
Solyc05g025890.3 Solanum lycopersicum HOM05D004023 ORTHO05D004681 6.9e-23 110.9 99 53.5
arahy.Tifrunner.gnm1.ann1.KW18SN Arachis hypogaea HOM05D004023 ORTHO05D004681 9.0e-23 110.5 102 52.0
Eucgr.J00649 Eucalyptus grandis HOM05D004023 ORTHO05D004681 9.0e-23 110.5 107 54.2
MBI13_g41748_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 9.0e-23 110.5 107 54.2
Nitab4.5_0000024g0190 Nicotiana tabacum HOM05D004023 ORTHO05D004681 9.0e-23 110.5 113 46.9
Solyc12g099940.2 Solanum lycopersicum HOM05D004023 ORTHO05D004681 9.0e-23 110.5 107 52.3
Sopen12g034560 Solanum pennellii HOM05D004023 ORTHO05D004681 9.0e-23 110.5 107 52.3
Peaxi162Scf00554g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 1.2e-22 110.2 102 50.0
arahy.Tifrunner.gnm1.ann1.KDYD97 Arachis hypogaea HOM05D004023 ORTHO05D004681 1.5e-22 109.8 105 48.6
Sabra06G0111200 Salix brachista HOM05D004023 ORTHO05D004681 1.5e-22 109.8 102 54.9
PGSC0003DMG400004653 Solanum tuberosum HOM05D004023 ORTHO05D004681 1.5e-22 109.8 107 51.4
Cc01_g06740 Coffea canephora HOM05D004023 ORTHO05D004681 2.6e-22 109.0 106 51.9
Cc06_g12120 Coffea canephora HOM05D004023 ORTHO05D004681 2.6e-22 109.0 102 51.0
Migut.D00690 Erythranthe guttata HOM05D004023 ORTHO05D004681 2.6e-22 109.0 107 52.3
Glyma.09G069500 Glycine max HOM05D004023 ORTHO05D004681 2.6e-22 109.0 102 49.0
HanXRQChr09g0237831 Helianthus annuus HOM05D004023 ORTHO05D004681 2.6e-22 109.0 107 53.3
Sopen05g021320 Solanum pennellii HOM05D004023 ORTHO05D004681 2.6e-22 109.0 99 52.5
vmacro04098 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 2.6e-22 109.0 115 53.0
MD02G1091000 Malus domestica HOM05D004023 ORTHO05D004681 3.4e-22 108.6 102 51.0
MSTRG.18474 Avicennia marina HOM05D004023 ORTHO05D004681 4.4e-22 108.2 104 53.8
Aqoxy1G00042 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 5.8e-22 107.8 107 51.4
CDE05G0867 Ceratophyllum demersum HOM05D004023 ORTHO05D004681 5.8e-22 107.8 84 60.7
HanXRQChr14g0431991 Helianthus annuus HOM05D004023 ORTHO05D004681 7.6e-22 107.5 104 51.9
ECA240G3187 Erigeron canadensis HOM05D004023 ORTHO05D004681 1.3e-21 106.7 105 51.4
Nn7g37124 Nelumbo nucifera HOM05D004023 ORTHO05D004681 1.3e-21 106.7 127 46.5
PSO339G3635 Papaver somniferum HOM05D004023 ORTHO05D004681 1.3e-21 106.7 107 56.1
Actinidia24483 Actinidia chinensis HOM05D004023 ORTHO05D004681 2.2e-21 105.9 108 53.7
FvH4_1g08620 Fragaria vesca HOM05D004023 ORTHO05D004681 2.2e-21 105.9 103 53.4
FAN19G1115 Fragaria x ananassa HOM05D004023 ORTHO05D004681 2.2e-21 105.9 103 53.4
FAN23G1893 Fragaria x ananassa HOM05D004023 ORTHO05D004681 2.9e-21 105.5 103 53.4
Hund12723 Selenicereus undatus HOM05D004023 ORTHO05D004681 2.9e-21 105.5 104 52.9
FAN26G1792 Fragaria x ananassa HOM05D004023 ORTHO05D004681 6.4e-21 104.4 103 52.4
FAN28G2268 Fragaria x ananassa HOM05D004023 ORTHO05D004681 6.4e-21 104.4 103 52.4
Rhsim13G0202100 Rhododendron simsii HOM05D004023 ORTHO05D004681 6.4e-21 104.4 115 53.0
RcHm_v2.0_Chr2g0094881 Rosa chinensis HOM05D004023 ORTHO05D004681 6.4e-21 104.4 103 51.5
FAN26G3281 Fragaria x ananassa HOM05D004023 ORTHO05D004681 1.1e-20 103.6 103 52.4
Prupe.7G199400 Prunus persica HOM05D004023 ORTHO05D004681 1.1e-20 103.6 102 45.1
unitig_60.g25636 Utricularia gibba HOM05D004023 ORTHO05D004681 1.4e-20 103.2 136 42.6
TWI63G1612 Tripterygium wilfordii HOM05D004023 ORTHO05D004681 4.2e-20 101.7 119 46.2
Gohir.D13G196385 Gossypium hirsutum HOM05D004023 ORTHO05D004681 3.5e-19 98.6 106 49.1
Gorai.013G224500 Gossypium raimondii HOM05D004023 ORTHO05D004681 3.5e-19 98.6 106 49.1
TWI34G0375 Tripterygium wilfordii HOM05D004023 ORTHO05D004681 3.5e-19 98.6 118 44.1
Migut.L01563 Erythranthe guttata HOM05D004023 ORTHO05D004681 1.7e-18 96.3 99 49.5
Gohir.A13G191000 Gossypium hirsutum HOM05D004023 ORTHO05D004681 3.0e-18 95.5 106 47.2
Lsat_1_v5_gn_2_38101 Lactuca sativa HOM05D004023 ORTHO05D004681 2.5e-17 92.4 107 46.7
Sc18g0002510 Simmondsia chinensis HOM05D004023 ORTHO05D004681 2.5e-17 92.4 100 45.0
Glyma.13G110200 Glycine max HOM05D004023 ORTHO05D004681 5.6e-17 91.3 103 44.7
CANSAT56G0673 Cannabis sativa HOM05D004023 ORTHO05D004681 2.8e-16 89.0 100 44.0
Phvul.003G131100 Phaseolus vulgaris HOM05D004023 ORTHO05D004681 2.8e-16 89.0 108 43.5
Duzib168G1033 Durio zibethinus HOM05D004023 ORTHO05D004681 8.1e-16 87.4 94 46.8
SalBow5G0641 Salvia bowleyana HOM05D004023 ORTHO05D004681 1.8e-15 86.3 95 47.4
PSO063G3828 Papaver somniferum HOM05D004023 ORTHO05D004681 2.4e-15 85.9 102 42.2
ClCG03G015110 Citrullus lanatus HOM05D004023 ORTHO05D004681 1.2e-14 83.6 107 43.9
CSS0047726 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 2.0e-14 82.8 107 42.1
Actinidia07003 Actinidia chinensis HOM05D004023 ORTHO05D004681 2.6e-14 82.4 98 43.9
EL10Ac6g15385 Beta vulgaris HOM05D004023 ORTHO05D004681 4.5e-14 81.6 177 32.8
SMO200G0269 Selaginella moellendorffii HOM05D004023 ORTHO05D004681 1.7e-13 79.7 103 37.9
Glyma.17G049500 Glycine max HOM05D004023 ORTHO05D004681 3.8e-13 78.6 105 41.0
Manes.03G040200 Manihot esculenta HOM05D004023 ORTHO05D004681 4.9e-13 78.2 67 53.7
Rhsim03G0227800 Rhododendron simsii HOM05D004023 ORTHO05D004681 2.4e-12 75.9 105 39.0
SGA_v2.0_scaffold29G12111 Striga asiatica HOM05D004023 ORTHO05D004681 4.2e-12 75.1 180 32.2
Lj4A912T25 Lonicera japonica HOM05D004023 ORTHO05D004681 1.2e-11 73.6 123 37.4
AagrBONN_evm.TU.Sc2ySwM_117.2238 Anthoceros agrestis HOM05D004023 ORTHO05D004681 2.1e-11 72.8 109 43.1
Lj2C946G11 Lonicera japonica HOM05D004023 ORTHO05D004681 2.7e-11 72.4 109 42.2
Mapoly0023s0080 Marchantia polymorpha HOM05D004023 ORTHO05D004681 3.5e-11 72.0 132 34.8
PSO339G4574 Papaver somniferum HOM05D004023 ORTHO05D004681 3.9e-10 68.6 101 37.6
Nn8g38657 Nelumbo nucifera HOM05D004023 ORTHO05D004681 1.1e-09 67.0 66 48.5
Peaxi162Scf00062g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 1.5e-09 66.6 175 29.1
PSO384G0928 Papaver somniferum HOM05D004023 ORTHO05D004681 3.3e-09 65.5 101 38.6
PSO384G3720 Papaver somniferum HOM05D004023 ORTHO05D004681 3.3e-09 65.5 101 38.6
Pp3c12_9920 Physcomitrium patens HOM05D004023 ORTHO05D004681 2.8e-08 62.4 110 37.3
Sed0008804 Sechium edule HOM05D004023 ORTHO05D004681 1.1e-07 60.5 101 32.7
vmacro06339 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 9.0e-07 57.4 89 38.2
PSO339G2030 Papaver somniferum HOM05D004023 ORTHO05D004681 7.6e-06 54.3 94 34.0


User provided reference genes

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