Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 8.1e-305 1049.7 558 100.0
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 4.2e-269 931.0 578 85.8
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 7.5e-218 760.8 598 69.1
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 2.5e-213 745.7 526 74.1
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 1.6e-212 743.0 525 73.3
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 2.4e-208 729.2 596 66.9
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 1.6e-207 726.5 596 66.9
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 7.8e-207 724.2 596 67.1
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 1.7e-206 723.0 596 66.6
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 4.8e-204 714.9 595 65.7
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 6.9e-203 711.1 589 66.0
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 1.2e-202 710.3 588 65.3
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 1.2e-202 710.3 595 66.1
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 1.5e-202 709.9 524 72.5
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 5.8e-202 708.0 593 65.4
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 7.6e-202 707.6 588 65.3
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 1.3e-201 706.8 587 65.4
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 2.2e-201 706.1 590 65.6
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 3.8e-201 705.3 589 66.2
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 8.4e-201 704.1 508 74.6
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.1e-200 703.7 588 66.0
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 1.1e-200 703.7 595 64.0
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 1.1e-200 703.7 522 70.3
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 1.4e-200 703.4 522 70.7
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 3.2e-200 702.2 595 64.2
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 3.2e-200 702.2 588 65.5
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 4.2e-200 701.8 588 65.8
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 5.4e-200 701.4 588 65.8
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 9.3e-200 700.7 508 70.9
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 3.5e-199 698.7 588 65.6
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 4.6e-199 698.4 524 70.0
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 1.3e-198 696.8 589 64.5
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.3e-198 696.8 524 69.8
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 1.3e-198 696.8 522 70.5
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 3.9e-198 695.3 595 63.0
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 3.9e-198 695.3 522 69.7
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 5.1e-198 694.9 586 64.2
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 6.6e-198 694.5 586 63.8
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 6.6e-198 694.5 522 69.9
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 6.6e-198 694.5 522 69.7
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 8.7e-198 694.1 522 69.7
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 8.7e-198 694.1 588 63.9
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 1.5e-197 693.3 594 64.6
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 2.5e-197 692.6 586 63.8
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 2.5e-197 692.6 524 69.7
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 2.5e-197 692.6 584 64.7
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 2.5e-197 692.6 527 69.3
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.3e-197 691.8 522 70.3
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 4.3e-197 691.8 589 64.3
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 7.3e-197 691.0 594 64.5
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 1.3e-196 690.3 586 64.7
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 2.1e-196 689.5 552 66.3
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 3.6e-196 688.7 522 69.0
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.8e-196 688.3 522 69.7
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 6.2e-196 688.0 592 63.7
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 8.1e-196 687.6 522 69.7
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 1.1e-195 687.2 522 69.5
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.1e-195 687.2 525 69.7
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 1.1e-195 687.2 541 68.0
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.4e-195 686.8 555 65.2
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 2.4e-195 686.0 602 63.0
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 6.9e-195 684.5 586 64.2
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 9.0e-195 684.1 522 69.5
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 1.2e-194 683.7 522 69.7
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.5e-194 683.3 545 66.1
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 2.0e-194 682.9 591 63.5
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.4e-194 682.2 545 66.1
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 3.4e-194 682.2 522 68.2
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 4.5e-194 681.8 543 68.0
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 5.8e-194 681.4 526 68.6
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 7.6e-194 681.0 522 68.4
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 9.9e-194 680.6 590 63.9
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 9.9e-194 680.6 522 68.6
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.7e-193 679.9 522 68.2
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 2.2e-193 679.5 522 68.4
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 2.2e-193 679.5 522 68.4
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 2.9e-193 679.1 542 68.8
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 3.8e-193 678.7 538 67.3
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 3.8e-193 678.7 524 68.9
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 8.4e-193 677.6 589 64.0
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 8.4e-193 677.6 594 62.8
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 8.4e-193 677.6 509 69.0
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 1.1e-192 677.2 532 68.2
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 1.1e-192 677.2 530 69.8
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 1.9e-192 676.4 585 64.1
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 2.4e-192 676.0 560 66.2
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 2.4e-192 676.0 530 67.5
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 2.4e-192 676.0 588 64.5
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 2.4e-192 676.0 532 67.3
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 2.4e-192 676.0 530 66.6
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 4.2e-192 675.2 623 60.7
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 7.1e-192 674.5 523 69.0
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 7.1e-192 674.5 565 65.5
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 9.3e-192 674.1 531 69.1
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 1.2e-191 673.7 565 65.5
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 1.6e-191 673.3 523 69.0
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 2.1e-191 672.9 565 65.1
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 2.7e-191 672.5 522 69.2
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 6.0e-191 671.4 522 69.2
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 1.3e-190 670.2 531 68.5
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 1.3e-190 670.2 528 67.8
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 1.3e-190 670.2 585 63.8
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 2.3e-190 669.5 531 68.4
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 3.0e-190 669.1 524 66.6
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 5.1e-190 668.3 528 67.8
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 8.7e-190 667.5 524 67.0
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 1.5e-189 666.8 523 68.3
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 2.8e-188 662.5 531 67.6
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 2.8e-188 662.5 527 67.0
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 8.1e-188 661.0 523 68.3
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 8.1e-188 661.0 693 55.3
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 9.0e-187 657.5 595 62.2
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 1.5e-186 656.8 522 66.3
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 1.3e-185 653.7 522 65.3
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 1.9e-184 649.8 625 57.6
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 2.5e-184 649.4 565 64.2
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 2.0e-178 629.8 522 65.1
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 2.2e-172 609.8 515 63.9
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 5.9e-170 601.7 529 62.0
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.0e-166 590.9 480 66.7
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.5e-165 587.0 449 71.3
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 2.5e-152 543.1 437 66.8
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 3.2e-152 542.7 589 54.5
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 3.6e-151 539.3 431 67.3
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 3.9e-150 535.8 526 57.4
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 9.1e-139 498.0 505 57.2
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 4.4e-133 479.2 520 50.8
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 4.9e-124 449.1 311 75.9
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 1.5e-112 411.0 370 61.4
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.7e-108 397.5 469 53.1
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.1e-102 378.3 386 56.5
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 4.0e-102 376.3 253 78.3
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 1.3e-100 371.3 530 43.6
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 1.7e-92 344.4 249 72.3
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 6.6e-89 332.4 563 40.0
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.9e-88 330.9 294 61.6
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.6e-79 301.2 232 72.0
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 7.6e-77 292.4 276 62.0
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.0e-69 267.7 226 64.6
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 5.1e-57 226.5 208 59.6
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 1.8e-54 218.0 239 51.5
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 4.2e-51 206.8 323 38.7
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 1.0e-44 185.7 121 78.5
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 9.7e-40 169.1 246 43.5
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 3.2e-27 127.5 81 75.3
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 1.8e-25 121.7 121 57.9
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.2e-24 119.0 205 41.5
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 6.8e-17 93.2 50 82.0
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 1.4e-14 85.5 52 84.6
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 2.4e-14 84.7 51 82.4
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 2.4e-14 84.7 51 82.4
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 5.4e-14 83.6 137 43.8
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 1.0e-09 69.3 102 43.1
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.6e-08 64.7 69 55.1
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 1.3e-07 62.4 105 45.7
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 3.2e-06 57.8 30 83.3
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 3.2e-06 57.8 30 83.3
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 3.2e-06 57.8 103 44.7


User provided reference genes

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