Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb406920 Zea mays HOM05D005512 ORTHO05D006716 1.7e-95 352.8 202 100.0
Os11g0154900 Oryza sativa ssp. japonica HOM05D005512 ORTHO05D006716 6.0e-40 168.3 195 62.6
Zm00001eb197160 Zea mays HOM05D005512 ORTHO05D006716 1.7e-34 150.2 192 56.2
Dinv31662 Davidia involucrata HOM05D005512 ORTHO05D006716 3.2e-17 92.8 91 58.2
Potri.006G114600 Populus trichocarpa HOM05D005512 ORTHO05D006716 5.5e-17 92.0 91 58.2
Nn2g14077 Nelumbo nucifera HOM05D005512 ORTHO05D006716 7.1e-17 91.7 76 69.7
TAR623G0330 Trochodendron aralioides HOM05D005512 ORTHO05D006716 1.2e-16 90.9 93 58.1
Dinv21230 Davidia involucrata HOM05D005512 ORTHO05D006716 1.6e-16 90.5 91 58.2
HPP92_009043 Vanilla planifolia HOM05D005512 ORTHO05D006716 2.1e-16 90.1 88 60.2
Nn6g34983 Nelumbo nucifera HOM05D005512 ORTHO05D006716 3.5e-16 89.4 72 70.8
GSVIVG01033811001 Vitis vinifera HOM05D005512 ORTHO05D006716 4.6e-16 89.0 91 58.2
CsaV3_3G037090 Cucumis sativus L. HOM05D005512 ORTHO05D006716 7.9e-16 88.2 90 55.6
Aqoxy4G02826 Aquilegia oxysepala HOM05D005512 ORTHO05D006716 1.8e-15 87.0 88 60.2
ClCG10G019160 Citrullus lanatus HOM05D005512 ORTHO05D006716 1.8e-15 87.0 90 54.4
TWI53G0330 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 3.0e-15 86.3 91 59.3
CDE08G0293 Ceratophyllum demersum HOM05D005512 ORTHO05D006716 3.9e-15 85.9 71 66.2
Lj3A1000G63 Lonicera japonica HOM05D005512 ORTHO05D006716 3.9e-15 85.9 91 54.9
Sabra06G0089500 Salix brachista HOM05D005512 ORTHO05D006716 5.1e-15 85.5 175 41.7
Prupe.7G114400 Prunus persica HOM05D005512 ORTHO05D006716 6.7e-15 85.1 90 53.3
CANSAT80G2511 Cannabis sativa HOM05D005512 ORTHO05D006716 8.7e-15 84.7 71 64.8
Ciclev10013541m.g Citrus clementina HOM05D005512 ORTHO05D006716 8.7e-15 84.7 72 63.9
QL07p039701 Quercus lobata HOM05D005512 ORTHO05D006716 8.7e-15 84.7 90 54.4
Sed0026834 Sechium edule HOM05D005512 ORTHO05D006716 8.7e-15 84.7 90 53.3
CDE06G1506 Ceratophyllum demersum HOM05D000077 ORTHO05D002348 1.5e-14 84.0 71 66.2
AUR62028570 Chenopodium quinoa HOM05D005512 ORTHO05D006716 1.9e-14 83.6 71 62.0
Phvul.001G188300 Phaseolus vulgaris HOM05D005512 ORTHO05D006716 1.9e-14 83.6 77 64.9
Thecc.05G085400 Theobroma cacao HOM05D005512 ORTHO05D006716 1.9e-14 83.6 140 40.7
Lj1g0021236 Lotus japonicus HOM05D005512 ORTHO05D006716 2.5e-14 83.2 72 63.9
Lalb_Chr20g0112081 Lupinus albus HOM05D005512 ORTHO05D006716 2.5e-14 83.2 90 53.3
VMungo1383G0830 Vigna mungo HOM05D005512 ORTHO05D006716 2.5e-14 83.2 72 63.9
AUR62033525 Chenopodium quinoa HOM05D005512 ORTHO05D006716 3.3e-14 82.8 71 62.0
MD12G1022300 Malus domestica HOM05D005512 ORTHO05D006716 3.3e-14 82.8 90 52.2
Sc20g0006160 Simmondsia chinensis HOM05D005512 ORTHO05D006716 4.3e-14 82.4 81 58.0
COL.COLO4_29783 Corchorus olitorius HOM05D005512 ORTHO05D006716 5.7e-14 82.0 92 52.2
MELO3C009455.2 Cucumis melo HOM05D005512 ORTHO05D006716 5.7e-14 82.0 127 42.5
TWI74G0342 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 5.7e-14 82.0 91 56.0
Cc08_g02550 Coffea canephora HOM05D005512 ORTHO05D006716 7.4e-14 81.6 87 56.3
Manes.09G059527 Manihot esculenta HOM05D005512 ORTHO05D006716 7.4e-14 81.6 91 52.7
PSO384G3501 Papaver somniferum HOM05D005512 ORTHO05D006716 7.4e-14 81.6 71 63.4
CiPaw.10G007200 Carya illinoinensis HOM05D005512 ORTHO05D006716 9.6e-14 81.3 90 51.1
RcHm_v2.0_Chr3g0472661 Rosa chinensis HOM05D005512 ORTHO05D006716 9.6e-14 81.3 90 50.0
CiPaw.09G010900 Carya illinoinensis HOM05D005512 ORTHO05D006716 1.3e-13 80.9 72 63.9
Cfa016575 Carpinus fangiana HOM05D005512 ORTHO05D006716 1.6e-13 80.5 88 52.3
Atru.chr8.1592 Acer truncatum HOM05D005512 ORTHO05D006716 2.1e-13 80.1 91 50.5
Cpa.g.sc5.51 Carica papaya HOM05D005512 ORTHO05D006716 2.1e-13 80.1 140 41.4
Haze_19571 Corylus avellana HOM05D005512 ORTHO05D006716 2.1e-13 80.1 88 51.1
Lsat_1_v5_gn_6_66321 Lactuca sativa HOM05D005512 ORTHO05D006716 2.1e-13 80.1 72 63.9
Gorai.009G405400 Gossypium raimondii HOM05D005512 ORTHO05D006716 2.8e-13 79.7 72 61.1
CAN.G397.46 Capsicum annuum HOM05D005512 ORTHO05D006716 3.7e-13 79.3 71 63.4
Gohir.D04G102100 Gossypium hirsutum HOM05D005512 ORTHO05D006716 3.7e-13 79.3 72 61.1
Nitab4.5_0005756g0030 Nicotiana tabacum HOM05D005512 ORTHO05D006716 3.7e-13 79.3 87 52.9
PSO339G0823 Papaver somniferum HOM05D005512 ORTHO05D006716 3.7e-13 79.3 71 62.0
CARHR020060 Cardamine hirsuta HOM05D005512 ORTHO05D006716 4.8e-13 79.0 87 52.9
MBI17_g31309_MAGBIO Magnolia biondii HOM05D005512 ORTHO05D006716 4.8e-13 79.0 171 40.4
Nitab4.5_0011780g0020 Nicotiana tabacum HOM05D005512 ORTHO05D006716 4.8e-13 79.0 87 52.9
THA.LOC104804992 Tarenaya hassleriana HOM05D005512 ORTHO05D006716 4.8e-13 79.0 71 62.0
ECA238G0726 Erigeron canadensis HOM05D000284 ORTHO05D001229 6.2e-13 78.6 72 63.9
FAN09G0635 Fragaria x ananassa HOM05D005512 ORTHO05D006716 6.2e-13 78.6 90 48.9
MD14G1019200 Malus domestica HOM05D005512 ORTHO05D006716 6.2e-13 78.6 90 48.9
Lsat_1_v5_gn_2_22561 Lactuca sativa HOM05D005512 ORTHO05D006716 8.2e-13 78.2 165 40.0
Sopen09g004520 Solanum pennellii HOM05D005512 ORTHO05D006716 8.2e-13 78.2 71 64.8
Aa31LG7G4150 Aethionema arabicum HOM05D005512 ORTHO05D006716 1.1e-12 77.8 71 57.7
Glyma.03G193300 Glycine max HOM05D005512 ORTHO05D006716 1.1e-12 77.8 72 59.7
BcaB03g14441 Brassica carinata HOM05D005512 ORTHO05D006716 1.4e-12 77.4 87 51.7
FvH4_6g18250 Fragaria vesca HOM05D005512 ORTHO05D006716 1.4e-12 77.4 90 48.9
FAN14G2174 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.4e-12 77.4 90 48.9
FAN14G2179 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.4e-12 77.4 90 48.9
MSTRG.10360 Avicennia marina HOM05D005512 ORTHO05D006716 1.8e-12 77.0 95 50.5
Hma1.2p1_0084F.1_g043460 Hydrangea macrophylla HOM05D005512 ORTHO05D006716 1.8e-12 77.0 103 53.4
AT1G19490 Arabidopsis thaliana HOM05D005512 ORTHO05D006716 2.4e-12 76.6 87 50.6
Peaxi162Scf00752g00310 Petunia axillaris HOM05D005512 ORTHO05D006716 2.4e-12 76.6 71 64.8
Peaxi162Scf36127g00005 Petunia axillaris HOM05D005512 ORTHO05D006716 2.4e-12 76.6 71 64.8
Oeu056908.1 Olea europaea HOM05D005512 ORTHO05D006716 3.1e-12 76.3 87 55.2
Actinidia08422 Actinidia chinensis HOM05D005512 ORTHO05D006716 4.1e-12 75.9 70 62.9
Carub.0001s1906 Capsella rubella HOM05D005512 ORTHO05D006716 4.1e-12 75.9 112 42.0
Gohir.A04G064600 Gossypium hirsutum HOM05D005512 ORTHO05D006716 4.1e-12 75.9 72 58.3
EL10Ac7g16952 Beta vulgaris HOM05D005512 ORTHO05D006716 5.3e-12 75.5 92 50.0
Thhalv10009681m.g Eutrema salsugineum HOM05D005512 ORTHO05D006716 5.3e-12 75.5 71 56.3
AL1G32240 Arabidopsis lyrata HOM05D005512 ORTHO05D006716 6.9e-12 75.1 127 39.4
FAN05G0202 Fragaria x ananassa HOM05D005512 ORTHO05D006716 6.9e-12 75.1 91 49.5
A06p15670 Brassica napus HOM05D005512 ORTHO05D006716 9.0e-12 74.7 87 49.4
C05p17910 Brassica napus HOM05D005512 ORTHO05D006716 9.0e-12 74.7 87 49.4
BraA06t24676Z Brassica rapa HOM05D005512 ORTHO05D006716 9.0e-12 74.7 87 49.4
FAN02G2015 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.5e-11 73.9 91 48.4
Glyma.19G193400 Glycine max HOM05D005512 ORTHO05D006716 1.5e-11 73.9 138 41.3
PGR142G2241 Punica granatum HOM05D005512 ORTHO05D006716 1.5e-11 73.9 72 59.7
Sp1g17370 Schrenkiella parvula HOM05D005512 ORTHO05D006716 1.5e-11 73.9 71 54.9
Solyc09g009760.1 Solanum lycopersicum HOM05D005512 ORTHO05D006716 1.5e-11 73.9 89 51.7
DCAR_020766 Daucus carota HOM05D005512 ORTHO05D006716 2.6e-11 73.2 93 51.6
Duzib128G1345 Durio zibethinus HOM05D005512 ORTHO05D006716 2.6e-11 73.2 103 44.7
Nitab4.5_0000794g0130 Nicotiana tabacum HOM05D005512 ORTHO05D006716 2.6e-11 73.2 71 57.7
Hund14853 Selenicereus undatus HOM05D005512 ORTHO05D006716 2.6e-11 73.2 87 49.4
DCAR_009151 Daucus carota HOM05D005512 ORTHO05D006716 3.4e-11 72.8 86 53.5
HanXRQChr16g0518951 Helianthus annuus HOM05D005512 ORTHO05D006716 5.8e-11 72.0 162 40.1
Actinidia10388 Actinidia chinensis HOM05D005512 ORTHO05D006716 1.3e-10 70.9 96 47.9
arahy.Tifrunner.gnm1.ann1.EPRD9B Arachis hypogaea HOM05D005512 ORTHO05D006716 2.2e-10 70.1 72 58.3
CSS0012282 Camellia sinensis var. sinensis HOM05D005512 ORTHO05D006716 4.2e-09 65.9 70 57.1
unitig_22.g5122 Utricularia gibba HOM05D005512 ORTHO05D006716 1.6e-08 63.9 76 50.0
FAN05G5667 Fragaria x ananassa HOM05D005512 ORTHO05D006716 2.7e-08 63.2 122 36.9
Pp3c14_6250 Physcomitrium patens HOM05D005512 ORTHO05D006716 1.3e-07 60.8 71 52.1
Sopen10g032880 Solanum pennellii HOM05D005512 ORTHO05D006716 1.8e-07 60.5 61 54.1
PGSC0003DMG400028166 Solanum tuberosum HOM05D005512 ORTHO05D006716 3.0e-07 59.7 61 54.1
Pp3c17_11650 Physcomitrium patens HOM05D005512 ORTHO05D006716 6.7e-07 58.5 71 50.7
Solyc10g083380.2 Solanum lycopersicum HOM05D005512 ORTHO05D006716 8.7e-07 58.2 61 52.5
SMO351G0354 Selaginella moellendorffii HOM05D005512 ORTHO05D006716 4.3e-06 55.8 86 43.0
arahy.Tifrunner.gnm1.ann1.S7MLB0 Arachis hypogaea HOM05D005512 ORTHO05D006716 7.4e-06 55.1 72 50.0


User provided reference genes

Program Settings