Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 0.0e+00 1320.4 655 100.0
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 2.0e-257 892.5 668 68.9
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 6.8e-186 654.8 660 51.8
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 8.9e-186 654.4 675 50.8
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 8.9e-186 654.4 584 56.2
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 3.4e-185 652.5 602 54.7
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 3.8e-184 649.0 641 52.0
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 5.4e-183 645.2 637 52.0
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 1.0e-181 641.0 641 51.6
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 1.7e-181 640.2 586 54.4
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 1.5e-180 637.1 649 51.8
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 1.5e-180 637.1 654 50.5
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 2.1e-179 633.3 656 50.6
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 3.6e-179 632.5 609 53.4
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 1.1e-178 630.9 635 51.2
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 3.1e-178 629.4 630 52.2
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 1.2e-177 627.5 636 51.1
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 2.0e-177 626.7 670 49.6
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 9.9e-177 624.4 618 51.5
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 1.7e-176 623.6 636 51.4
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 2.9e-176 622.9 573 54.8
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 6.4e-176 621.7 606 50.0
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 8.4e-176 621.3 678 48.8
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 1.4e-175 620.5 632 50.9
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 1.4e-175 620.5 577 53.6
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 1.9e-175 620.2 582 52.2
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 2.4e-175 619.8 650 49.8
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 7.1e-175 618.2 608 53.0
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 1.2e-174 617.5 695 48.6
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 2.1e-174 616.7 609 52.5
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 2.7e-174 616.3 676 47.9
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 2.7e-174 616.3 644 50.0
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 3.5e-174 615.9 577 53.0
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 3.5e-174 615.9 603 53.2
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 4.6e-174 615.5 605 50.1
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 1.0e-173 614.4 635 51.3
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 1.7e-173 613.6 575 52.9
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 3.9e-173 612.5 608 51.5
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 5.1e-173 612.1 611 50.2
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 1.1e-172 610.9 659 48.6
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 3.3e-172 609.4 677 48.9
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 5.6e-172 608.6 659 48.4
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 7.4e-172 608.2 604 50.0
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 1.3e-171 607.4 706 47.0
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 2.1e-171 606.7 644 48.8
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 2.1e-171 606.7 609 52.2
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 1.8e-170 603.6 568 54.0
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 2.0e-169 600.1 595 51.1
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 4.5e-169 599.0 608 51.3
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 4.5e-169 599.0 635 49.0
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 7.6e-169 598.2 628 50.2
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 2.9e-168 596.3 614 50.2
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 6.4e-168 595.1 541 55.1
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 8.4e-168 594.7 600 52.3
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 1.9e-167 593.6 644 48.4
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 2.4e-167 593.2 574 52.1
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 2.4e-167 593.2 634 50.0
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 1.6e-166 590.5 610 50.2
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 2.7e-166 589.7 642 48.6
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 1.0e-165 587.8 588 50.9
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 3.0e-165 586.3 640 47.5
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 6.2e-163 578.6 606 49.0
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 4.0e-162 575.9 611 50.2
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 5.3e-162 575.5 578 50.0
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 2.0e-161 573.5 625 48.3
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 7.6e-161 571.6 619 48.9
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 3.8e-160 569.3 571 49.9
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 1.9e-159 567.0 646 47.5
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 2.1e-158 563.5 628 47.9
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 7.9e-158 561.6 575 48.9
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 4.3e-156 555.8 659 45.5
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 1.1e-154 551.2 687 45.4
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.1e-154 551.2 619 48.1
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.8e-154 550.4 596 48.3
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.2e-153 547.7 497 54.3
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 2.9e-152 543.1 600 48.0
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 1.9e-151 540.4 571 49.2
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 3.3e-148 529.6 578 48.6
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 1.4e-146 524.2 670 43.9
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 9.0e-146 521.5 760 39.2
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 1.5e-145 520.8 548 49.6
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 3.8e-144 516.2 650 44.5
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 7.9e-142 508.4 651 44.7
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 5.3e-138 495.7 620 43.1
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 1.0e-136 491.5 566 46.3
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 1.3e-136 491.1 613 44.5
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 1.7e-136 490.7 575 44.5
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 1.7e-136 490.7 963 33.9
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 7.9e-134 481.9 705 40.9
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 2.0e-132 477.2 583 45.1
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.2e-129 468.0 653 41.5
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 1.6e-126 457.6 670 40.4
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 3.6e-126 456.4 569 44.3
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 1.5e-124 451.1 700 39.4
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 1.7e-123 447.6 373 58.2
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 4.1e-122 443.0 377 56.0
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 1.0e-120 438.3 656 38.6
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 1.6e-113 414.5 378 55.0
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 2.2e-107 394.0 472 46.8
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 2.6e-100 370.5 328 56.4
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 2.2e-99 367.5 281 58.4
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 1.4e-98 364.8 303 56.4
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 9.2e-98 362.1 586 38.1
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 3.0e-96 357.1 613 37.8
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 8.0e-94 349.0 442 42.1
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 5.8e-92 342.8 499 38.5
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 3.2e-90 337.0 481 40.3
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.5e-87 327.4 448 43.1
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 1.3e-83 315.1 447 39.4
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 7.1e-82 309.3 360 46.7
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 2.5e-79 300.8 520 36.2
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 7.3e-79 299.3 344 47.1
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 4.7e-78 296.6 322 51.6
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 9.6e-63 245.7 562 29.9
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 1.6e-62 245.0 285 49.1
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 9.3e-58 229.2 215 53.5
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 2.3e-56 224.6 440 35.7
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 2.4e-53 214.5 155 63.2
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 5.3e-53 213.4 156 62.2
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 9.0e-53 212.6 283 41.0
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 2.9e-51 207.6 326 39.3
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 1.9e-50 204.9 321 41.4
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 2.1e-46 191.4 150 56.7
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 4.8e-46 190.3 147 59.2
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 6.9e-45 186.4 134 63.4
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 7.9e-41 172.9 195 48.7
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 3.3e-39 167.5 297 37.7
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 4.3e-39 167.2 193 49.2
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 1.3e-38 165.6 351 34.2
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 1.8e-37 161.8 239 41.8
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 2.1e-33 148.3 249 38.2
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 5.7e-31 140.2 229 38.0
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 3.7e-30 137.5 119 58.8
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 4.8e-30 137.1 106 62.3
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 6.3e-30 136.7 268 32.5
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 3.2e-26 124.4 206 38.3
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 2.1e-25 121.7 302 32.5
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 2.7e-25 121.3 84 64.3
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 1.8e-24 118.6 158 41.1
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 3.0e-24 117.9 83 65.1
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 1.1e-23 115.9 267 29.6
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 2.0e-20 105.1 72 63.9
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 1.0e-19 102.8 104 51.0
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 3.6e-17 94.4 85 56.5
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 1.4e-16 92.4 70 62.9
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-15 89.4 70 58.6
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.6e-12 79.0 77 54.5
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 8.5e-11 73.2 85 45.9
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.9e-10 72.0 93 46.2
Aqoxy1G02674 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.0e-08 66.2 55 58.2
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 9.7e-07 59.7 126 31.0


User provided reference genes

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