Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb405570 Zea mays HOM05D006019 ORTHO05D007900 6.3e-291 1003.4 529 100.0
Os06g0308000 Oryza sativa ssp. japonica HOM05D006019 ORTHO05D007900 2.1e-233 812.4 536 81.2
GSVIVG01037722001 Vitis vinifera HOM05D006019 ORTHO05D007900 2.7e-164 582.8 453 62.9
TAR629G1914 Trochodendron aralioides HOM05D006019 ORTHO05D007900 7.8e-164 581.3 514 58.2
COL.COLO4_09733 Corchorus olitorius HOM05D006019 ORTHO05D007900 6.2e-161 571.6 487 58.5
Thecc.07G028300 Theobroma cacao HOM05D006019 ORTHO05D007900 8.0e-161 571.2 453 61.8
Nn1g07344 Nelumbo nucifera HOM05D006019 ORTHO05D007900 1.1e-160 570.9 523 56.2
Potri.015G065900 Populus trichocarpa HOM05D006019 ORTHO05D007900 1.4e-160 570.5 453 60.9
CSS0042888 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 5.2e-160 568.5 531 55.2
Eucgr.F03504 Eucalyptus grandis HOM05D006019 ORTHO05D007900 5.2e-160 568.5 485 58.1
PGSC0003DMG400022300 Solanum tuberosum HOM05D006019 ORTHO05D007900 2.0e-159 566.6 453 60.3
CSS0000535 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 2.6e-159 566.2 531 54.8
FAN21G2609 Fragaria x ananassa HOM05D006019 ORTHO05D007900 4.4e-159 565.5 529 56.1
QL08p020269 Quercus lobata HOM05D006019 ORTHO05D007900 4.4e-159 565.5 452 60.8
Sopen07g033150 Solanum pennellii HOM05D006019 ORTHO05D007900 7.5e-159 564.7 453 60.0
Actinidia35369 Actinidia chinensis HOM05D006019 ORTHO05D007900 1.3e-158 563.9 466 60.5
Atru.chr2.3529 Acer truncatum HOM05D006019 ORTHO05D007900 2.2e-158 563.1 513 56.5
Peaxi162Scf00235g00727 Petunia axillaris HOM05D006019 ORTHO05D007900 2.2e-158 563.1 500 56.2
Atru.chr2.3549 Acer truncatum HOM05D006019 ORTHO05D007900 2.9e-158 562.8 524 56.1
CANSAT11G1049 Cannabis sativa HOM05D006019 ORTHO05D007900 3.7e-158 562.4 454 59.5
MELO3C014178.2 Cucumis melo HOM05D006019 ORTHO05D007900 3.7e-158 562.4 518 56.0
CAN.G337.58 Capsicum annuum HOM05D006019 ORTHO05D007900 4.9e-158 562.0 453 59.6
Solyc07g064950.3 Solanum lycopersicum HOM05D006019 ORTHO05D007900 4.9e-158 562.0 453 59.6
ClCG10G005120 Citrullus lanatus HOM05D006019 ORTHO05D007900 6.4e-158 561.6 529 56.0
CiPaw.11G172700 Carya illinoinensis HOM05D006019 ORTHO05D007900 1.1e-157 560.8 453 60.7
PGR031G3909 Punica granatum HOM05D006019 ORTHO05D007900 1.4e-157 560.5 453 59.8
Duzib213G0195 Durio zibethinus HOM05D006019 ORTHO05D007900 1.9e-157 560.1 498 56.8
DCAR_017106 Daucus carota HOM05D006019 ORTHO05D007900 2.4e-157 559.7 443 61.6
Sabra15G0091100 Salix brachista HOM05D006019 ORTHO05D007900 2.4e-157 559.7 453 59.4
CsaV3_3G004800 Cucumis sativus L. HOM05D006019 ORTHO05D007900 3.2e-157 559.3 537 55.1
Manes.03G136600 Manihot esculenta HOM05D006019 ORTHO05D007900 4.1e-157 558.9 451 60.1
THA.LOC104817684 Tarenaya hassleriana HOM05D006019 ORTHO05D007900 4.1e-157 558.9 517 55.9
Gohir.D01G070900 Gossypium hirsutum HOM05D006019 ORTHO05D007900 5.4e-157 558.5 453 59.6
Dinv22232 Davidia involucrata HOM05D006019 ORTHO05D007900 1.2e-156 557.4 436 62.8
Gorai.002G093600 Gossypium raimondii HOM05D006019 ORTHO05D007900 1.2e-156 557.4 453 59.4
PSO541G6030 Papaver somniferum HOM05D006019 ORTHO05D007900 1.2e-156 557.4 454 60.8
Sed0026759 Sechium edule HOM05D006019 ORTHO05D007900 1.6e-156 557.0 456 59.9
ATR1128G029 Amborella trichopoda HOM05D006019 ORTHO05D007900 3.5e-156 555.8 443 62.1
Gohir.A01G084500 Gossypium hirsutum HOM05D006019 ORTHO05D007900 4.6e-156 555.4 453 58.9
AUR62020342 Chenopodium quinoa HOM05D006019 ORTHO05D007900 1.0e-155 554.3 451 59.4
Aqoxy1G02863 Aquilegia oxysepala HOM05D006019 ORTHO05D007900 1.3e-155 553.9 455 60.4
PSO675G6628 Papaver somniferum HOM05D006019 ORTHO05D007900 1.3e-155 553.9 454 60.4
Ciclev10007944m.g Citrus clementina HOM05D006019 ORTHO05D007900 2.3e-155 553.1 453 60.0
RcHm_v2.0_Chr5g0041541 Rosa chinensis HOM05D006019 ORTHO05D007900 2.3e-155 553.1 533 55.5
Cc05_g14300 Coffea canephora HOM05D006019 ORTHO05D007900 3.0e-155 552.7 453 58.7
FAN25G1378 Fragaria x ananassa HOM05D006019 ORTHO05D007900 3.0e-155 552.7 495 57.4
vmacro09689 Vaccinium macrocarpon HOM05D006019 ORTHO05D007900 5.0e-155 552.0 453 60.3
Oeu026379.1 Olea europaea HOM05D006019 ORTHO05D007900 1.5e-154 550.4 449 59.9
Thhalv10013195m.g Eutrema salsugineum HOM05D006019 ORTHO05D007900 2.8e-153 546.2 486 55.1
ECA240G2757 Erigeron canadensis HOM05D006019 ORTHO05D007900 3.6e-153 545.8 453 56.3
LjContig00272g0018197 Lotus japonicus HOM05D006019 ORTHO05D007900 4.7e-153 545.4 453 58.3
Nitab4.5_0000984g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 4.7e-153 545.4 453 59.4
Carub.0008s1557 Capsella rubella HOM05D006019 ORTHO05D007900 1.1e-152 544.3 453 58.7
MBI19_g29437_MAGBIO Magnolia biondii HOM05D006019 ORTHO05D007900 1.1e-152 544.3 525 55.4
Nitab4.5_0002826g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 1.1e-152 544.3 453 59.4
AT5G55220 Arabidopsis thaliana HOM05D006019 ORTHO05D007900 1.4e-152 543.9 453 58.1
BcaB05g22192 Brassica carinata HOM05D006019 ORTHO05D007900 1.4e-152 543.9 453 57.4
AL8G30770 Arabidopsis lyrata HOM05D006019 ORTHO05D007900 1.8e-152 543.5 521 54.3
Prupe.4G223000 Prunus persica HOM05D006019 ORTHO05D007900 1.8e-152 543.5 451 59.6
HanXRQChr13g0408251 Helianthus annuus HOM05D006019 ORTHO05D007900 2.3e-152 543.1 512 53.1
VMungo0647G0128 Vigna mungo HOM05D006019 ORTHO05D007900 2.3e-152 543.1 454 58.1
Glyma.14G018700 Glycine max HOM05D006019 ORTHO05D007900 4.0e-152 542.3 454 57.3
Haze_09462 Corylus avellana HOM05D006019 ORTHO05D007900 5.2e-152 542.0 450 59.6
Glyma.02G294900 Glycine max HOM05D006019 ORTHO05D007900 5.2e-152 542.0 454 57.3
Sp6g17150 Schrenkiella parvula HOM05D006019 ORTHO05D007900 6.8e-152 541.6 454 57.3
Aa31LG3G11210 Aethionema arabicum HOM05D006019 ORTHO05D007900 8.9e-152 541.2 453 57.2
Phvul.008G272400 Phaseolus vulgaris HOM05D006019 ORTHO05D007900 1.5e-151 540.4 514 53.9
BraA02t06043Z Brassica rapa HOM05D006019 ORTHO05D007900 2.0e-151 540.0 455 57.6
BolC2t07733H Brassica oleracea HOM05D006019 ORTHO05D007900 3.4e-151 539.3 466 56.9
Migut.M01708 Erythranthe guttata HOM05D006019 ORTHO05D007900 5.8e-151 538.5 486 56.0
Lsat_1_v5_gn_9_90660 Lactuca sativa HOM05D006019 ORTHO05D007900 7.5e-151 538.1 450 56.4
Cpa.g.sc284.5 Carica papaya HOM05D006019 ORTHO05D007900 1.7e-150 537.0 473 56.7
MD11G1209500 Malus domestica HOM05D006019 ORTHO05D007900 2.2e-150 536.6 451 58.5
EL10Ac4g07692 Beta vulgaris HOM05D006019 ORTHO05D007900 4.9e-150 535.4 480 56.0
Lalb_Chr04g0248161 Lupinus albus HOM05D006019 ORTHO05D007900 4.9e-150 535.4 453 56.5
TPR.G35353 Trifolium pratense HOM05D006019 ORTHO05D007900 1.1e-149 534.3 470 56.0
Medtr5g093830 Medicago truncatula HOM05D006019 ORTHO05D007900 4.1e-149 532.3 467 56.3
Ca_06346_v3 Cicer arietinum L. HOM05D006019 ORTHO05D007900 9.2e-149 531.2 438 59.4
CARHR268580 Cardamine hirsuta HOM05D006019 ORTHO05D007900 7.8e-148 528.1 550 51.8
FvH4_3g23540 Fragaria vesca HOM05D006019 ORTHO05D007900 1.7e-147 526.9 505 56.0
arahy.Tifrunner.gnm1.ann1.G2L6CM Arachis hypogaea HOM05D006019 ORTHO05D007900 2.3e-147 526.6 453 55.4
Lj1C880T10 Lonicera japonica HOM05D006019 ORTHO05D007900 1.5e-146 523.9 447 57.3
HanXRQChr03g0076861 Helianthus annuus HOM05D006019 ORTHO05D007900 6.2e-145 518.5 450 55.3
TWI39G1205 Tripterygium wilfordii HOM05D006019 ORTHO05D007900 1.1e-144 517.7 453 56.5
Psat2g009800 Pisum sativum HOM05D006019 ORTHO05D007900 5.8e-143 511.9 505 52.5
C02p16310 Brassica napus HOM05D006019 ORTHO05D000403 3.8e-142 509.2 460 55.2
A02p09780 Brassica napus HOM05D006019 ORTHO05D000403 4.9e-142 508.8 460 54.8
AUR62015881 Chenopodium quinoa HOM05D006019 ORTHO05D007900 2.4e-141 506.5 467 54.2
Ah.06g182250 Amaranthus hybridus HOM05D006019 ORTHO05D007900 7.8e-140 501.5 470 54.7
FAN16G2690 Fragaria x ananassa HOM05D006019 ORTHO05D007900 2.8e-137 493.0 529 51.2
arahy.Tifrunner.gnm1.ann1.PR9FWM Arachis hypogaea HOM05D006019 ORTHO05D007900 1.1e-136 491.1 453 53.0
Rhsim04G0016400 Rhododendron simsii HOM05D006019 ORTHO05D000403 6.4e-134 481.9 508 52.2
BcaC03g14251 Brassica carinata HOM05D006019 ORTHO05D007900 1.4e-133 480.7 453 53.0
Hund01957 Selenicereus undatus HOM05D006019 ORTHO05D007900 3.0e-131 473.0 454 54.2
SEGI_28230 Sequoiadendron giganteum HOM05D006019 ORTHO05D007900 5.3e-128 462.2 546 46.0
CDE04G0522 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 1.1e-120 438.0 355 61.7
SGA_v2.0_scaffold171G38908 Striga asiatica HOM05D006019 ORTHO05D007900 5.3e-120 435.6 489 48.3
unitig_22.g6170 Utricularia gibba HOM05D006019 ORTHO05D007900 6.9e-120 435.3 373 59.0
Mapoly0157s0020 Marchantia polymorpha HOM05D006019 ORTHO05D007900 2.6e-119 433.3 467 46.5
Pp3c11_10950 Physcomitrium patens HOM05D006019 ORTHO05D007900 1.6e-116 424.1 478 45.2
SalBow8G4839 Salvia bowleyana HOM05D006019 ORTHO05D007900 3.9e-115 419.5 529 46.3
AagrBONN_evm.TU.Sc2ySwM_228.3732 Anthoceros agrestis HOM05D006019 ORTHO05D007900 8.7e-115 418.3 487 44.1
BcaC03g14252 Brassica carinata HOM05D006019 ORTHO05D007900 7.4e-114 415.2 346 57.2
Pp3c2_30270 Physcomitrium patens HOM05D006019 ORTHO05D007900 3.1e-112 409.8 530 42.3
Sc16g0005740 Simmondsia chinensis HOM05D006019 ORTHO05D007900 9.0e-112 408.3 395 52.7
CBR_g21850 Chara braunii HOM05D006019 ORTHO05D007900 4.6e-108 396.0 472 43.2
SMO361G0007 Selaginella moellendorffii HOM05D006019 ORTHO05D007900 6.9e-104 382.1 438 42.0
FAN11G0939 Fragaria x ananassa HOM05D006019 ORTHO05D007900 7.7e-95 352.1 365 52.3
FAN25G3210 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.5e-90 337.8 291 59.1
MCO13G367 Micromonas commoda HOM05D006019 ORTHO05D007900 1.0e-70 271.9 512 31.6
PRCOL_00002693 Prasinoderma coloniale HOM05D006019 ORTHO05D007900 5.9e-63 246.1 427 32.6
HPP92_015779 Vanilla planifolia HOM05D006019 ORTHO05D007900 4.4e-42 176.8 260 46.2
A10p12490 Brassica napus HOM05D006019 ORTHO05D007900 3.0e-38 164.1 387 33.6
Glyma.14G020800 Glycine max HOM05D006019 ORTHO05D007900 5.2e-35 153.3 136 52.2
VMungo0464G1494 Vigna mungo HOM05D006019 ORTHO05D007900 7.5e-34 149.4 134 52.2
Cre01.g001750 Chlamydomonas reinhardtii HOM05D006019 ORTHO05D007900 7.8e-31 139.4 437 23.8
TAR720G0004 Trochodendron aralioides HOM05D006019 ORTHO05D007900 2.5e-29 134.4 106 59.4
Oeu026380.1 Olea europaea HOM05D006019 ORTHO05D007900 5.6e-29 133.3 120 52.5
CDE04G2936 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 3.6e-20 104.0 69 66.7
Glyma.14G020666 Glycine max HOM05D006019 ORTHO05D007900 4.9e-17 93.6 92 46.7
Ca_29171_v3 Cicer arietinum L. HOM05D006019 ORTHO05D003051 1.1e-16 92.4 453 22.1
BolC9t57451H Brassica oleracea HOM05D006019 ORTHO05D007900 1.9e-16 91.7 195 30.3
C09p45770 Brassica napus HOM05D006019 ORTHO05D007900 9.3e-16 89.4 220 29.1
Hma1.2p1_4091F.1_g338270 Hydrangea macrophylla HOM05D006019 ORTHO05D007900 2.7e-15 87.8 114 43.9
VMungo0647G0792 Vigna mungo HOM05D006019 ORTHO05D007900 4.6e-15 87.0 93 49.5
C09p45760 Brassica napus HOM05D006019 ORTHO05D007900 1.1e-13 82.4 107 43.9
BcaC04g20257 Brassica carinata HOM05D006019 ORTHO05D007900 1.5e-10 72.0 77 51.9
BraA10t43342Z Brassica rapa HOM05D006019 ORTHO05D007900 2.0e-10 71.6 208 27.4
unitig_22.g6169 Utricularia gibba HOM05D006019 ORTHO05D007900 1.0e-06 59.3 113 36.3


User provided reference genes

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