Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb404680 Zea mays HOM05D005945 ORTHO05D006749 0.0e+00 1674.8 843 100.0
Zm00001eb021170 Zea mays HOM05D005945 ORTHO05D006749 0.0e+00 1328.5 853 82.5
Zm00001eb442610 Zea mays HOM05D005945 ORTHO05D006749 0.0e+00 1191.0 595 100.0
Zm00001eb051100 Zea mays HOM05D005945 ORTHO05D006749 8.2e-309 1063.5 564 95.0
Zm00001eb343560 Zea mays HOM05D005945 ORTHO05D006749 5.2e-295 1017.7 668 81.1
Os03g0594700 Oryza sativa ssp. japonica HOM05D005945 ORTHO05D006749 2.6e-177 626.7 890 46.5
TAR376G0838 Trochodendron aralioides HOM05D005945 ORTHO05D006749 5.0e-40 170.6 298 39.9
GSVIVG01009690001 Vitis vinifera HOM05D005945 ORTHO05D006749 1.1e-39 169.5 262 39.7
TAR628G0886 Trochodendron aralioides HOM05D005945 ORTHO05D006749 1.6e-38 165.6 303 38.9
Dinv39407 Davidia involucrata HOM05D005945 ORTHO05D006749 6.2e-38 163.7 262 40.8
Oeu056183.1 Olea europaea HOM05D005945 ORTHO05D006749 4.0e-37 161.0 266 39.1
Nitab4.5_0000110g0520 Nicotiana tabacum HOM05D005945 ORTHO05D006749 2.2e-35 155.2 271 38.7
Nitab4.5_0003783g0040 Nicotiana tabacum HOM05D005945 ORTHO05D006749 3.7e-35 154.5 361 33.5
Actinidia15315 Actinidia chinensis HOM05D005945 ORTHO05D006749 4.9e-35 154.1 256 38.3
CSS0001698 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 6.4e-35 153.7 253 38.3
CSS0038834 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 1.1e-34 152.9 253 37.5
PSO675G9049 Papaver somniferum HOM05D005945 ORTHO05D006749 1.1e-34 152.9 253 39.1
Thecc.08G024700 Theobroma cacao HOM05D005945 ORTHO05D006749 1.4e-34 152.5 292 41.8
PSO541G4169 Papaver somniferum HOM05D005945 ORTHO05D006749 4.1e-34 151.0 254 38.6
Oeu036192.1 Olea europaea HOM05D005945 ORTHO05D006749 5.4e-34 150.6 334 35.0
Solyc04g080200.4 Solanum lycopersicum HOM05D005945 ORTHO05D006749 7.1e-34 150.2 271 38.7
Sopen04g033790 Solanum pennellii HOM05D005945 ORTHO05D006749 7.1e-34 150.2 271 38.7
Cpa.g.sc64.76 Carica papaya HOM05D005945 ORTHO05D006749 1.2e-33 149.4 326 35.0
COL.COLO4_26338 Corchorus olitorius HOM05D005945 ORTHO05D006749 1.6e-33 149.1 328 35.4
Gohir.A06G010700 Gossypium hirsutum HOM05D005945 ORTHO05D006749 2.7e-33 148.3 285 38.6
Gorai.010G010800 Gossypium raimondii HOM05D005945 ORTHO05D006749 6.0e-33 147.1 341 34.6
Gohir.D06G008100 Gossypium hirsutum HOM05D005945 ORTHO05D006749 7.8e-33 146.7 341 34.6
Lsat_1_v5_gn_1_17620 Lactuca sativa HOM05D005945 ORTHO05D006749 7.8e-33 146.7 429 31.0
PGSC0003DMG400005162 Solanum tuberosum HOM05D005945 ORTHO05D006749 7.8e-33 146.7 349 33.2
Potri.014G181200 Populus trichocarpa HOM05D005945 ORTHO05D006749 1.7e-32 145.6 255 37.3
MSTRG.25161 Avicennia marina HOM05D005945 ORTHO05D006749 2.3e-32 145.2 436 30.0
Cc10_g03040 Coffea canephora HOM05D005945 ORTHO05D006749 3.9e-32 144.4 258 38.8
Migut.C00710 Erythranthe guttata HOM05D005945 ORTHO05D006749 3.9e-32 144.4 429 29.6
Nn5g29549 Nelumbo nucifera HOM05D005945 ORTHO05D006749 3.9e-32 144.4 250 37.6
MBI16_g17464_MAGBIO Magnolia biondii HOM05D005945 ORTHO05D006749 8.6e-32 143.3 253 38.3
Dinv36067 Davidia involucrata HOM05D005945 ORTHO05D006749 3.3e-31 141.4 164 47.6
Duzib093G2051 Durio zibethinus HOM05D005945 ORTHO05D006749 5.6e-31 140.6 291 36.8
RcHm_v2.0_Chr6g0300761 Rosa chinensis HOM05D005945 ORTHO05D006749 9.5e-31 139.8 376 31.9
FAN20G0334 Fragaria x ananassa HOM05D005945 ORTHO05D006749 3.6e-30 137.9 368 30.4
CsaV3_2G028570 Cucumis sativus L. HOM05D005945 ORTHO05D006749 4.7e-30 137.5 383 32.4
FvH4_2g39990 Fragaria vesca HOM05D005945 ORTHO05D006749 4.7e-30 137.5 261 36.0
TAR628G0416 Trochodendron aralioides HOM05D005945 ORTHO05D006749 4.7e-30 137.5 168 49.4
SGA_v2.0_scaffold326G48709 Striga asiatica HOM05D005945 ORTHO05D006749 6.2e-30 137.1 606 25.1
Peaxi162Scf00690g00118 Petunia axillaris HOM05D005945 ORTHO05D006749 8.1e-30 136.7 289 35.3
FAN27G1966 Fragaria x ananassa HOM05D005945 ORTHO05D006749 1.8e-29 135.6 365 30.7
DCAR_008766 Daucus carota HOM05D005945 ORTHO05D006749 2.3e-29 135.2 281 34.9
Prupe.1G381200 Prunus persica HOM05D005945 ORTHO05D006749 2.3e-29 135.2 425 29.2
MD08G1033800 Malus domestica HOM05D005945 ORTHO05D006749 4.0e-29 134.4 428 30.1
FAN15G0837 Fragaria x ananassa HOM05D005945 ORTHO05D006749 5.2e-29 134.0 364 29.7
Psat7g242000 Pisum sativum HOM05D005945 ORTHO05D006749 5.2e-29 134.0 378 30.4
HPP92_021270 Vanilla planifolia HOM05D005945 ORTHO05D006749 6.8e-29 133.7 238 39.1
THA.LOC104803244 Tarenaya hassleriana HOM05D005945 ORTHO05D006749 1.5e-28 132.5 339 32.2
HanXRQChr04g0105591 Helianthus annuus HOM05D005945 ORTHO05D006749 2.0e-28 132.1 285 34.4
Hund26580 Selenicereus undatus HOM05D005945 ORTHO05D006749 4.4e-28 131.0 252 35.7
TWI12G1232 Tripterygium wilfordii HOM05D005945 ORTHO05D006749 5.8e-28 130.6 247 36.0
Manes.18G028200 Manihot esculenta HOM05D005945 ORTHO05D006749 1.3e-27 129.4 244 33.6
arahy.Tifrunner.gnm1.ann1.Q0ZVI3 Arachis hypogaea HOM05D005945 ORTHO05D006749 1.7e-27 129.0 363 27.8
MELO3C010931.2 Cucumis melo HOM05D005945 ORTHO05D006749 1.7e-27 129.0 382 31.7
Lj4A42T73 Lonicera japonica HOM05D005945 ORTHO05D006749 1.7e-27 129.0 179 45.3
TPR.G32532 Trifolium pratense HOM05D005945 ORTHO05D006749 1.7e-27 129.0 250 34.4
Aqoxy6G01057 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 2.9e-27 128.3 242 37.2
CANSAT25G3494 Cannabis sativa HOM05D005945 ORTHO05D006749 2.9e-27 128.3 247 36.8
ATR0618G067 Amborella trichopoda HOM05D005945 ORTHO05D006749 3.7e-27 127.9 176 42.0
Sc15g0006890 Simmondsia chinensis HOM05D005945 ORTHO05D006749 4.9e-27 127.5 256 38.3
BcaC07g40112 Brassica carinata HOM05D005945 ORTHO05D006749 8.3e-27 126.7 334 30.2
Ca_03064_v3 Cicer arietinum L. HOM05D005945 ORTHO05D006749 2.4e-26 125.2 255 34.1
HanXRQChr04g0105581 Helianthus annuus HOM05D005945 ORTHO05D006749 4.1e-26 124.4 286 32.5
Sabra14G0141200 Salix brachista HOM05D005945 ORTHO05D006749 7.1e-26 123.6 436 28.9
A09p49740 Brassica napus HOM05D005945 ORTHO05D006749 9.2e-26 123.2 330 28.8
BraA09t40427Z Brassica rapa HOM05D005945 ORTHO05D006749 9.2e-26 123.2 330 28.8
Medtr4g019490 Medicago truncatula HOM05D005945 ORTHO05D006749 9.2e-26 123.2 246 34.1
Phvul.010G012000 Phaseolus vulgaris HOM05D005945 ORTHO05D006749 9.2e-26 123.2 238 37.4
BolC8t50829H Brassica oleracea HOM05D005945 ORTHO05D006749 1.2e-25 122.9 324 30.6
Aqoxy4G01586 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 1.6e-25 122.5 244 36.5
SEGI_34412 Sequoiadendron giganteum HOM05D057448 ORTHO05D006749 1.6e-25 122.5 187 40.6
BcaC07g39998 Brassica carinata HOM05D005945 ORTHO05D006749 2.1e-25 122.1 343 29.7
C08p32110 Brassica napus HOM05D005945 ORTHO05D006749 2.1e-25 122.1 343 29.7
ClCG08G015230 Citrullus lanatus HOM05D005945 ORTHO05D006749 4.6e-25 120.9 310 31.9
Eucgr.F01555 Eucalyptus grandis HOM05D005945 ORTHO05D006749 4.6e-25 120.9 244 33.6
Glyma.03G071500 Glycine max HOM05D005945 ORTHO05D006749 4.6e-25 120.9 241 34.4
Manes.05G161400 Manihot esculenta HOM05D005945 ORTHO05D006749 4.6e-25 120.9 248 33.9
AT3G56870 Arabidopsis thaliana HOM05D005945 ORTHO05D006749 7.8e-25 120.2 447 25.3
Glyma.01G104600 Glycine max HOM05D005945 ORTHO05D006749 3.9e-24 117.9 241 34.4
Atru.chr13.502 Acer truncatum HOM05D005945 ORTHO05D006749 5.1e-24 117.5 157 43.3
Gohir.D02G094500 Gossypium hirsutum HOM05D005945 ORTHO05D006749 6.6e-24 117.1 235 35.3
PGR031G1506 Punica granatum HOM05D005945 ORTHO05D006749 8.6e-24 116.7 241 33.2
ECA247G0868 Erigeron canadensis HOM05D005945 ORTHO05D006749 1.1e-23 116.3 263 32.7
Gorai.005G107400 Gossypium raimondii HOM05D005945 ORTHO05D006749 1.1e-23 116.3 237 35.4
Lj3g0003314 Lotus japonicus HOM05D005945 ORTHO05D006749 1.1e-23 116.3 251 32.3
VMungo0331G0095 Vigna mungo HOM05D005945 ORTHO05D006749 1.9e-23 115.5 245 34.7
Lalb_Chr03g0042671 Lupinus albus HOM05D005945 ORTHO05D006749 4.3e-23 114.4 290 31.4
QL02p007988 Quercus lobata HOM05D005945 ORTHO05D006749 4.3e-23 114.4 862 23.2
Sp5g05720 Schrenkiella parvula HOM05D005945 ORTHO05D006749 4.3e-23 114.4 275 29.5
Sed0009733 Sechium edule HOM05D005945 ORTHO05D006749 7.3e-23 113.6 262 34.0
EL10Ac1g01817 Beta vulgaris HOM05D005945 ORTHO05D006749 1.2e-22 112.8 429 25.6
AL5G38260 Arabidopsis lyrata HOM05D005945 ORTHO05D006749 1.6e-22 112.5 493 25.2
arahy.Tifrunner.gnm1.ann1.01TKSZ Arachis hypogaea HOM05D005945 ORTHO05D006749 4.7e-22 110.9 397 25.9
Sed0010063 Sechium edule HOM05D005945 ORTHO05D006749 6.2e-22 110.5 299 30.1
Carub.0005s2360 Capsella rubella HOM05D005945 ORTHO05D006749 2.4e-21 108.6 275 29.1
Thhalv10005811m.g Eutrema salsugineum HOM05D005945 ORTHO05D006749 3.1e-21 108.2 315 29.2
Ah.11g043130 Amaranthus hybridus HOM05D005945 ORTHO05D006749 4.0e-21 107.8 273 27.5
Lalb_Chr19g0125071 Lupinus albus HOM05D005945 ORTHO05D006749 2.0e-20 105.5 158 39.2
Aa31LG10G11720 Aethionema arabicum HOM05D005945 ORTHO05D006749 4.4e-20 104.4 321 29.9
Haze_17984 Corylus avellana HOM05D005945 ORTHO05D006749 1.7e-19 102.4 331 27.8
Lj2g0002553 Lotus japonicus HOM05D005945 ORTHO05D006749 2.9e-19 101.7 243 32.9
Cfa018140 Carpinus fangiana HOM05D005945 ORTHO05D006749 3.8e-19 101.3 314 28.3
AUR62043686 Chenopodium quinoa HOM05D005945 ORTHO05D006749 1.9e-18 99.0 380 25.3
CARHR167020 Cardamine hirsuta HOM05D005945 ORTHO05D006749 1.2e-17 96.3 332 28.6
Aqoxy4G01559 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 2.1e-17 95.5 300 31.0
Rhsim06G0034700 Rhododendron simsii HOM05D005945 ORTHO05D006749 3.5e-17 94.7 271 33.2
Actinidia22556 Actinidia chinensis HOM05D005945 ORTHO05D006749 1.0e-16 93.2 106 44.3
AUR62038825 Chenopodium quinoa HOM05D005945 ORTHO05D006749 1.3e-16 92.8 222 27.9
CiPaw.15G076000 Carya illinoinensis HOM05D005945 ORTHO05D006749 4.3e-15 87.8 282 29.8
MD15G1030400 Malus domestica HOM05D005945 ORTHO05D006749 7.3e-15 87.0 374 27.0
Ah.05g167400 Amaranthus hybridus HOM05D005945 ORTHO05D006749 2.6e-12 78.6 229 29.7
AagrBONN_evm.TU.Sc2ySwM_344.3266 Anthoceros agrestis HOM05D005945 ORTHO05D006749 2.6e-12 78.6 159 30.8
vmacro21631 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 1.3e-11 76.3 104 38.5
HPP92_021280 Vanilla planifolia HOM05D050438 ORTHO05D006749 2.4e-10 72.0 146 36.3
CDE02G0146 Ceratophyllum demersum HOM05D060868 ORTHO05D006749 2.1e-09 68.9 166 31.9
SEGI_18222 Sequoiadendron giganteum HOM05D007138 ORTHO05D009148 2.7e-09 68.6 195 29.7
CDE04G3738 Ceratophyllum demersum HOM05D060868 ORTHO05D006749 6.0e-09 67.4 122 33.6
Mapoly0005s0138 Marchantia polymorpha HOM05D036654 ORTHO05D006749 1.7e-08 65.9 154 30.5
Lalb_Chr13g0294671 Lupinus albus HOM05D007138 ORTHO05D009148 1.5e-07 62.8 210 25.7
Ciclev10004866m.g Citrus clementina HOM05D007138 ORTHO05D009148 2.5e-07 62.0 200 28.0
TWI53G1035 Tripterygium wilfordii HOM05D007138 ORTHO05D009148 2.5e-07 62.0 115 31.3
arahy.Tifrunner.gnm1.ann1.JT7ZMS Arachis hypogaea HOM05D007138 ORTHO05D009148 4.3e-07 61.2 152 30.3
arahy.Tifrunner.gnm1.ann1.KQUG48 Arachis hypogaea HOM05D007138 ORTHO05D009148 5.6e-07 60.8 124 33.9
TAR381G0602 Trochodendron aralioides HOM05D005945 ORTHO05D006749 5.6e-07 60.8 122 36.9
MSTRG.9782 Avicennia marina HOM05D007138 ORTHO05D009148 1.6e-06 59.3 121 27.3
TPR.G11960 Trifolium pratense HOM05D000150 ORTHO05D000108 1.6e-06 59.3 126 27.8
FAN12G4162 Fragaria x ananassa HOM05D007138 ORTHO05D009148 2.8e-06 58.5 143 28.0
FvH4_4g12980 Fragaria vesca HOM05D007138 ORTHO05D009148 4.8e-06 57.8 143 28.0
Hma1.2p1_1457F.1_g284650 Hydrangea macrophylla HOM05D007138 ORTHO05D009148 6.2e-06 57.4 139 27.3
Sopen09g035410 Solanum pennellii HOM05D007138 ORTHO05D009148 6.2e-06 57.4 113 31.0


User provided reference genes

Program Settings