Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 0.0e+00 1613.2 875 100.0
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 0.0e+00 1169.1 887 76.1
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 1.1e-300 1036.6 899 69.0
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 4.0e-165 586.3 904 45.6
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 6.4e-163 578.9 917 44.7
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 4.1e-162 576.2 898 45.1
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 1.7e-160 570.9 862 45.7
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 5.1e-160 569.3 903 45.4
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 4.9e-155 552.7 873 45.0
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 2.1e-150 537.3 877 44.2
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 2.4e-149 533.9 896 43.5
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 2.0e-148 530.8 907 42.4
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 2.9e-147 526.9 927 42.8
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 1.7e-144 517.7 873 43.0
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 6.6e-144 515.8 720 48.1
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 8.7e-144 515.4 891 43.0
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 1.1e-143 515.0 915 42.0
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 1.3e-142 511.5 891 41.8
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 2.0e-140 504.2 904 41.2
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 4.4e-140 503.1 774 45.6
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 2.2e-139 500.7 857 42.5
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 4.9e-139 499.6 802 44.1
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 4.9e-139 499.6 896 41.1
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 1.4e-138 498.0 888 42.2
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 2.4e-138 497.3 800 44.0
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 2.4e-138 497.3 905 41.0
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.3e-135 486.9 884 39.7
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 3.3e-135 486.9 820 43.2
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 9.6e-135 485.3 884 39.7
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 9.6e-135 485.3 884 39.7
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 2.8e-134 483.8 916 40.8
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 4.8e-134 483.0 862 42.7
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 6.2e-134 482.6 905 41.0
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.1e-133 481.9 884 39.4
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 1.2e-132 478.4 870 41.1
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 3.4e-132 476.9 898 41.2
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 1.3e-131 474.9 796 43.3
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.3e-131 474.9 885 39.5
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 1.7e-131 474.6 904 40.0
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 4.9e-131 473.0 729 48.4
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 1.1e-130 471.9 906 40.1
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 4.2e-130 469.9 965 38.9
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 7.1e-130 469.2 899 40.3
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 9.3e-130 468.8 904 40.3
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 7.9e-129 465.7 884 41.7
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 1.0e-128 465.3 891 39.5
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 1.8e-128 464.5 885 40.2
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 2.3e-128 464.2 886 41.3
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.1e-127 461.8 898 40.4
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 1.1e-127 461.8 876 40.6
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 4.3e-127 459.9 876 41.1
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 5.6e-127 459.5 891 39.7
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 9.6e-127 458.8 882 40.5
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 1.3e-126 458.4 888 40.1
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 4.8e-126 456.4 894 39.6
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 1.1e-125 455.3 862 40.4
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 1.1e-125 455.3 862 40.4
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 2.4e-125 454.1 896 40.1
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 1.7e-123 448.0 896 39.2
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 2.2e-123 447.6 856 39.7
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 2.2e-123 447.6 852 40.8
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 1.4e-122 444.9 854 40.2
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 2.5e-122 444.1 765 42.1
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.1e-121 441.0 881 39.0
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 2.7e-121 440.7 891 37.5
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 3.9e-120 436.8 882 39.8
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 6.7e-120 436.0 729 45.7
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 1.9e-119 434.5 859 39.6
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 4.3e-119 433.3 865 38.6
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 7.4e-119 432.6 810 40.7
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 9.6e-119 432.2 658 44.4
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 1.6e-118 431.4 880 39.2
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 3.7e-118 430.3 910 38.9
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 4.8e-118 429.9 869 39.6
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 4.1e-117 426.8 873 38.6
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 9.0e-117 425.6 815 40.4
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 1.2e-116 425.2 853 39.5
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.2e-116 425.2 854 39.2
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 2.0e-116 424.5 884 37.2
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 2.9e-115 420.6 681 46.4
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 1.4e-114 418.3 901 38.1
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 2.1e-113 414.5 766 40.9
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 2.3e-112 411.0 964 36.4
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 3.9e-112 410.2 886 37.6
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 1.3e-110 405.2 621 45.6
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 2.8e-110 404.1 894 36.8
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 4.8e-110 403.3 871 37.2
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 4.8e-110 403.3 869 37.4
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 1.4e-109 401.7 819 38.6
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 3.1e-109 400.6 916 36.2
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 5.9e-108 396.4 873 37.0
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 2.2e-107 394.4 871 36.9
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 3.8e-107 393.7 767 40.3
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 4.2e-106 390.2 870 36.9
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 2.7e-105 387.5 881 36.2
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 3.6e-105 387.1 869 37.7
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 3.0e-104 384.0 826 37.0
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 9.7e-103 379.0 864 38.2
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 1.3e-102 378.6 885 36.8
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 2.2e-102 377.9 871 36.6
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 4.8e-102 376.7 786 37.2
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 4.8e-102 376.7 852 36.7
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 3.1e-101 374.0 788 37.2
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 1.3e-99 368.6 877 36.5
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 3.2e-98 364.0 772 37.2
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 4.2e-98 363.6 761 38.0
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 7.2e-98 362.8 775 37.4
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 2.7e-97 360.9 858 36.1
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 3.6e-97 360.5 466 46.6
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 1.4e-96 358.6 772 36.8
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 9.7e-95 352.4 905 34.5
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 7.2e-90 336.3 505 43.2
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 1.1e-82 312.4 891 33.4
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 7.0e-77 293.1 665 36.4
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 9.4e-74 282.7 608 38.8
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 1.7e-67 261.9 828 30.9
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 5.4e-61 240.4 441 38.3
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 7.0e-61 240.0 868 30.6
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.5e-58 231.5 445 40.4
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.2e-55 222.6 409 38.4
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 1.4e-48 199.1 625 30.1
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 7.5e-47 193.4 228 47.4
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 9.2e-45 186.4 650 32.6
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 2.2e-38 165.2 888 26.0
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 5.1e-35 154.1 214 46.3
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 1.9e-34 152.1 434 36.4
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 2.9e-30 138.3 158 52.5
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 3.8e-30 137.9 637 24.3
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 1.1e-29 136.3 271 42.4
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 2.1e-28 132.1 177 42.9
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.9e-26 125.6 142 51.4
Zm00001eb088890 Zea mays HOM05D000021 ORTHO05D000010 2.5e-26 125.2 71 85.9
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 2.1e-25 122.1 170 44.7
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 6.2e-25 120.6 441 31.7
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 3.1e-24 118.2 142 45.8
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 4.0e-24 117.9 388 34.5
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 6.9e-24 117.1 164 48.8
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 4.5e-23 114.4 283 34.6
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 5.1e-19 100.9 183 32.2
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 1.1e-18 99.8 104 52.9
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 5.8e-15 87.4 235 35.7
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.3e-14 86.3 364 29.9
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 6.4e-14 84.0 99 50.5
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 6.4e-14 84.0 99 50.5
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 7.9e-12 77.0 253 36.0
Zm00001eb243030 Zea mays HOM05D006198 ORTHO05D008226 6.7e-11 73.9 36 91.7
Zm00001eb373810 Zea mays HOM05D006198 ORTHO05D008226 6.7e-11 73.9 36 91.7
arahy.Tifrunner.gnm1.ann1.73J9IG Arachis hypogaea HOM05D004001 ORTHO05D004559 8.1e-09 67.0 89 50.6
HPP92_018393 Vanilla planifolia HOM05D004001 ORTHO05D004559 4.0e-08 64.7 62 59.7
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 9.0e-08 63.5 243 30.9
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 5.8e-07 60.8 148 35.1
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 7.6e-07 60.5 100 40.0
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 1.0e-06 60.1 243 29.6
arahy.Tifrunner.gnm1.ann1.GD98VG Arachis hypogaea HOM05D004001 ORTHO05D004559 4.9e-06 57.8 45 73.3
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 4.9e-06 57.8 44 65.9


User provided reference genes

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