Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb003810 Zea mays HOM05D003842 ORTHO05D004436 3.0e-60 235.0 117 100.0
Zm00001eb403350 Zea mays HOM05D003842 ORTHO05D004436 3.0e-60 235.0 117 100.0
AT2G36810 Arabidopsis thaliana HOM05D003842 ORTHO05D004436 2.7e-32 142.1 120 59.2
Sc20g0005740 Simmondsia chinensis HOM05D003842 ORTHO05D004436 3.5e-32 141.7 120 60.0
Carub.0004s1865 Capsella rubella HOM05D003842 ORTHO05D004436 7.8e-32 140.6 120 58.3
Aqoxy1G01066 Aquilegia oxysepala HOM05D003842 ORTHO05D004436 1.0e-31 140.2 120 55.0
CARHR131190 Cardamine hirsuta HOM05D003842 ORTHO05D004436 1.0e-31 140.2 120 58.3
AL4G33000 Arabidopsis lyrata HOM05D003842 ORTHO05D004436 1.7e-31 139.4 120 58.3
Atru.chr8.1720 Acer truncatum HOM05D003842 ORTHO05D004436 2.3e-31 139.0 120 58.3
Aa31LG5G22020 Aethionema arabicum HOM05D003842 ORTHO05D004436 2.9e-31 138.7 120 58.3
Ciclev10023867m.g Citrus clementina HOM05D003842 ORTHO05D004436 2.9e-31 138.7 120 58.3
GSVIVG01033696001 Vitis vinifera HOM05D003842 ORTHO05D004436 3.8e-31 138.3 120 57.5
Thhalv10016131m.g Eutrema salsugineum HOM05D003842 ORTHO05D004436 8.6e-31 137.1 120 56.7
THA.LOC104818591 Tarenaya hassleriana HOM05D003842 ORTHO05D004436 2.5e-30 135.6 120 55.0
EL10Ac7g16718 Beta vulgaris HOM05D003842 ORTHO05D004436 4.3e-30 134.8 120 56.7
TAR633G0529 Trochodendron aralioides HOM05D003842 ORTHO05D004436 4.3e-30 134.8 120 55.8
Nn6g35197 Nelumbo nucifera HOM05D003842 ORTHO05D004436 5.6e-30 134.4 119 57.1
Sp4g19070 Schrenkiella parvula HOM05D003842 ORTHO05D004436 5.6e-30 134.4 120 55.0
Ah.08g211380 Amaranthus hybridus HOM05D003842 ORTHO05D004436 7.3e-30 134.0 121 59.5
Cfa016461 Carpinus fangiana HOM05D003842 ORTHO05D004436 9.5e-30 133.7 120 55.0
AUR62042272 Chenopodium quinoa HOM05D003842 ORTHO05D004436 1.2e-29 133.3 120 56.7
MD12G1104900 Malus domestica HOM05D003842 ORTHO05D004436 1.2e-29 133.3 120 55.8
QL07p041738 Quercus lobata HOM05D003842 ORTHO05D004436 1.2e-29 133.3 120 53.3
Haze_19462 Corylus avellana HOM05D003842 ORTHO05D004436 1.6e-29 132.9 120 55.0
Potri.006G120800 Populus trichocarpa HOM05D003842 ORTHO05D004436 1.6e-29 132.9 120 55.0
CiPaw.09G003300 Carya illinoinensis HOM05D003842 ORTHO05D004436 2.1e-29 132.5 120 56.7
AUR62036532 Chenopodium quinoa HOM05D003842 ORTHO05D004436 2.1e-29 132.5 120 55.8
Duzib093G0118 Durio zibethinus HOM05D003842 ORTHO05D004436 2.1e-29 132.5 120 56.7
Oeu045240.1 Olea europaea HOM05D003842 ORTHO05D004436 3.6e-29 131.7 120 53.3
PSO339G3623 Papaver somniferum HOM05D003842 ORTHO05D004436 3.6e-29 131.7 120 53.3
RcHm_v2.0_Chr3g0471001 Rosa chinensis HOM05D003842 ORTHO05D004436 3.6e-29 131.7 120 56.7
Duzib106G1778 Durio zibethinus HOM05D003842 ORTHO05D004436 4.7e-29 131.3 120 55.8
Dinv35821 Davidia involucrata HOM05D003842 ORTHO05D004436 6.1e-29 131.0 120 53.3
Gohir.D09G140200 Gossypium hirsutum HOM05D003842 ORTHO05D004436 6.1e-29 131.0 120 56.7
Gorai.006G160800 Gossypium raimondii HOM05D003842 ORTHO05D004436 6.1e-29 131.0 120 56.7
Gohir.A09G144400 Gossypium hirsutum HOM05D003842 ORTHO05D004436 8.0e-29 130.6 120 56.7
CANSAT80G2389 Cannabis sativa HOM05D003842 ORTHO05D004436 1.0e-28 130.2 120 55.0
Cpa.g.sc5.147 Carica papaya HOM05D003842 ORTHO05D004436 1.0e-28 130.2 120 55.8
FAN09G2316 Fragaria x ananassa HOM05D003842 ORTHO05D004436 1.0e-28 130.2 120 56.7
Gohir.D11G342400 Gossypium hirsutum HOM05D003842 ORTHO05D004436 1.4e-28 129.8 121 56.2
Gorai.007G372400 Gossypium raimondii HOM05D003842 ORTHO05D004436 1.4e-28 129.8 121 56.2
Manes.08G013802 Manihot esculenta HOM05D003842 ORTHO05D004436 1.4e-28 129.8 120 55.8
PSO063G4107 Papaver somniferum HOM05D003842 ORTHO05D004436 1.4e-28 129.8 120 52.5
Sabra06G0095000 Salix brachista HOM05D003842 ORTHO05D004436 1.4e-28 129.8 120 54.2
BraA04t18297Z Brassica rapa HOM05D003842 ORTHO05D004436 1.8e-28 129.4 124 53.2
Thecc.05G072900 Theobroma cacao HOM05D003842 ORTHO05D004436 1.8e-28 129.4 120 55.0
BcaC02g07579 Brassica carinata HOM05D003842 ORTHO05D004436 2.3e-28 129.0 124 52.4
BolC4t28040H Brassica oleracea HOM05D003842 ORTHO05D004436 2.3e-28 129.0 124 52.4
Phvul.001G181800 Phaseolus vulgaris HOM05D003842 ORTHO05D004436 2.3e-28 129.0 118 55.1
A04p28120 Brassica napus HOM05D003842 ORTHO05D004436 3.0e-28 128.6 124 53.2
C04p65510 Brassica napus HOM05D003842 ORTHO05D004436 3.0e-28 128.6 124 53.2
Gohir.A11G323300 Gossypium hirsutum HOM05D003842 ORTHO05D004436 3.0e-28 128.6 121 55.4
CSS0021824 Camellia sinensis var. sinensis HOM05D003842 ORTHO05D004436 4.0e-28 128.3 120 52.5
CSS0023266 Camellia sinensis var. sinensis HOM05D003842 ORTHO05D004436 4.0e-28 128.3 120 52.5
PGR142G1271 Punica granatum HOM05D003842 ORTHO05D004436 4.0e-28 128.3 120 53.3
FAN02G1267 Fragaria x ananassa HOM05D003842 ORTHO05D004436 5.2e-28 127.9 120 55.8
Glyma.19G186900 Glycine max HOM05D003842 ORTHO05D004436 5.2e-28 127.9 118 55.9
Migut.L01724 Erythranthe guttata HOM05D003842 ORTHO05D004436 8.9e-28 127.1 120 55.0
FvH4_6g17010 Fragaria vesca HOM05D003842 ORTHO05D004436 1.2e-27 126.7 120 55.0
Lalb_Chr20g0112381 Lupinus albus HOM05D003842 ORTHO05D004436 1.5e-27 126.3 118 55.1
Medtr7g102430 Medicago truncatula HOM05D003842 ORTHO05D004436 1.5e-27 126.3 118 53.4
TWI74G0820 Tripterygium wilfordii HOM05D003842 ORTHO05D004436 2.0e-27 125.9 120 53.3
FAN05G0072 Fragaria x ananassa HOM05D003842 ORTHO05D004436 3.4e-27 125.2 120 55.0
CsaV3_6G040160 Cucumis sativus L. HOM05D003842 ORTHO05D004436 4.4e-27 124.8 119 54.6
Prupe.7G124700 Prunus persica HOM05D003842 ORTHO05D004436 4.4e-27 124.8 120 53.3
Sed0026042 Sechium edule HOM05D003842 ORTHO05D004436 5.8e-27 124.4 119 54.6
arahy.Tifrunner.gnm1.ann1.BQYP5G Arachis hypogaea HOM05D003842 ORTHO05D004436 1.3e-26 123.2 118 54.2
arahy.Tifrunner.gnm1.ann1.CVPH5H Arachis hypogaea HOM05D003842 ORTHO05D004436 1.3e-26 123.2 118 54.2
Psat3g040240 Pisum sativum HOM05D003842 ORTHO05D004436 1.3e-26 123.2 118 53.4
Lj3C992G6 Lonicera japonica HOM05D003842 ORTHO05D004436 1.7e-26 122.9 110 56.4
Ca_08928_v3 Cicer arietinum L. HOM05D003842 ORTHO05D004436 2.9e-26 122.1 118 53.4
Ca_08873_v3 Cicer arietinum L. HOM05D003842 ORTHO05D004436 3.7e-26 121.7 118 53.4
MELO3C024492.2 Cucumis melo HOM05D003842 ORTHO05D004436 3.7e-26 121.7 119 52.9
Rhsim03G0088500 Rhododendron simsii HOM05D003842 ORTHO05D004436 3.7e-26 121.7 113 54.0
MSTRG.26674 Avicennia marina HOM05D003842 ORTHO05D004436 4.9e-26 121.3 120 51.7
TPR.G8693 Trifolium pratense HOM05D003842 ORTHO05D004436 4.9e-26 121.3 118 54.2
Lj1g0002569 Lotus japonicus HOM05D003842 ORTHO05D004436 6.4e-26 120.9 118 50.8
CAN.G1038.13 Capsicum annuum HOM05D003842 ORTHO05D004436 8.3e-26 120.6 120 50.0
ClCG04G009540 Citrullus lanatus HOM05D003842 ORTHO05D004436 1.1e-25 120.2 120 54.2
Lsat_1_v5_gn_6_28640 Lactuca sativa HOM05D003842 ORTHO05D004436 1.1e-25 120.2 120 55.8
FAN05G4099 Fragaria x ananassa HOM05D003842 ORTHO05D004436 2.4e-25 119.0 121 53.7
Nitab4.5_0003314g0020 Nicotiana tabacum HOM05D003842 ORTHO05D004436 7.0e-25 117.5 119 47.9
HanXRQChr13g0400661 Helianthus annuus HOM05D003842 ORTHO05D004436 9.2e-25 117.1 120 54.2
Cc06_g04620 Coffea canephora HOM05D003842 ORTHO05D004436 1.2e-24 116.7 112 50.9
ATR0043G024 Amborella trichopoda HOM05D003842 ORTHO05D004436 1.6e-24 116.3 121 56.2
Peaxi162Scf00435g01013 Petunia axillaris HOM05D003842 ORTHO05D004436 3.5e-24 115.2 120 47.5
ECA233G4297 Erigeron canadensis HOM05D003842 ORTHO05D004436 4.6e-24 114.8 120 53.3
Eucgr.K02431 Eucalyptus grandis HOM05D003842 ORTHO05D004436 4.6e-24 114.8 120 50.8
Solyc09g008490.4 Solanum lycopersicum HOM05D003842 ORTHO05D004436 1.3e-23 113.2 120 48.3
Sopen09g003320 Solanum pennellii HOM05D003842 ORTHO05D004436 2.3e-23 112.5 120 47.5
Nitab4.5_0002535g0020 Nicotiana tabacum HOM05D003842 ORTHO05D004436 1.1e-22 110.2 113 48.7
SGA_v2.0_scaffold224G42922 Striga asiatica HOM05D003842 ORTHO05D004436 1.8e-20 102.8 154 39.6
SMO137G0253 Selaginella moellendorffii HOM05D003842 ORTHO05D004436 6.8e-12 74.3 118 34.7
Mapoly0008s0039 Marchantia polymorpha HOM05D003842 ORTHO05D004436 1.2e-11 73.6 112 39.3
SMO207G0008 Selaginella moellendorffii HOM05D003842 ORTHO05D004436 2.4e-09 65.9 111 33.3
Pp3c2_21970 Physcomitrium patens HOM05D003842 ORTHO05D004436 9.2e-09 63.9 120 34.2
COL.COLO4_26898 Corchorus olitorius HOM05D003842 ORTHO05D004436 2.1e-08 62.8 66 50.0
CDE07G0362 Ceratophyllum demersum HOM05D003842 ORTHO05D004436 1.1e-06 57.0 68 42.6
AagrBONN_evm.TU.Sc2ySwM_228.1882 Anthoceros agrestis HOM05D003842 ORTHO05D004436 7.3e-06 54.3 117 27.4


User provided reference genes

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