Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 3.8e-48 194.5 97 100.0
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 3.1e-26 121.7 65 95.4
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 5.3e-26 120.9 61 100.0
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 5.3e-26 120.9 61 100.0
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 5.3e-26 120.9 61 100.0
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 2.3e-21 105.5 102 60.8
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 3.9e-21 104.8 61 86.9
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 5.1e-21 104.4 99 62.6
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 1.9e-20 102.4 61 85.2
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 5.6e-20 100.9 61 85.2
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 1.3e-19 99.8 57 87.7
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 3.7e-19 98.2 61 83.6
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 1.1e-15 86.7 57 75.4
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 4.3e-12 74.7 57 64.9
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 5.7e-12 74.3 59 61.0
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 5.7e-12 74.3 61 65.6
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 2.2e-11 72.4 59 59.3
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 2.2e-11 72.4 56 64.3
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 3.7e-11 71.6 56 58.9
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 6.3e-11 70.9 60 60.0
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 6.3e-11 70.9 60 60.0
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 8.2e-11 70.5 55 63.6
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 1.8e-10 69.3 60 58.3
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 2.4e-10 68.9 60 58.3
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 4.1e-10 68.2 54 66.7
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 4.1e-10 68.2 54 66.7
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 6.9e-10 67.4 56 64.3
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 9.0e-10 67.0 61 60.7
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 1.5e-09 66.2 61 59.0
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 1.5e-09 66.2 54 57.4
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 1.5e-09 66.2 61 59.0
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 2.0e-09 65.9 49 65.3
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 2.6e-09 65.5 56 62.5
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 2.6e-09 65.5 56 62.5
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 3.4e-09 65.1 49 65.3
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 3.4e-09 65.1 51 64.7
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 3.4e-09 65.1 54 64.8
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 3.4e-09 65.1 49 69.4
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 4.5e-09 64.7 62 51.6
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 4.5e-09 64.7 59 54.2
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 5.9e-09 64.3 51 62.7
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 5.9e-09 64.3 51 64.7
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 5.9e-09 64.3 51 64.7
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 5.9e-09 64.3 51 62.7
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 5.9e-09 64.3 49 65.3
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 7.6e-09 63.9 47 66.0
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 7.6e-09 63.9 53 64.2
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 1.0e-08 63.5 51 62.7
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 1.0e-08 63.5 51 62.7
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 1.0e-08 63.5 51 62.7
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 1.0e-08 63.5 51 62.7
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 1.0e-08 63.5 51 62.7
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 1.0e-08 63.5 51 62.7
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 1.0e-08 63.5 59 55.9
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 1.0e-08 63.5 49 67.3
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 1.0e-08 63.5 51 64.7
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.0e-08 63.5 51 64.7
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 1.3e-08 63.2 50 64.0
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 1.3e-08 63.2 51 62.7
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 1.3e-08 63.2 49 63.3
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 1.3e-08 63.2 49 61.2
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 1.3e-08 63.2 52 59.6
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 1.3e-08 63.2 50 60.0
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 1.3e-08 63.2 57 57.9
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 1.3e-08 63.2 57 54.4
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 1.7e-08 62.8 49 63.3
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 1.7e-08 62.8 50 64.0
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 1.7e-08 62.8 50 64.0
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 1.7e-08 62.8 50 64.0
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 2.2e-08 62.4 50 64.0
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 2.2e-08 62.4 56 55.4
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 2.2e-08 62.4 62 50.0
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 2.9e-08 62.0 63 47.6
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 2.9e-08 62.0 63 47.6
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 2.9e-08 62.0 53 60.4
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 3.8e-08 61.6 50 64.0
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 5.0e-08 61.2 62 51.6
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 5.0e-08 61.2 49 67.3
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 5.0e-08 61.2 62 50.0
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 6.5e-08 60.8 49 63.3
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 6.5e-08 60.8 46 67.4
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 8.5e-08 60.5 54 53.7
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 8.5e-08 60.5 57 54.4
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 1.1e-07 60.1 50 62.0
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 1.1e-07 60.1 49 65.3
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 1.1e-07 60.1 57 52.6
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 1.4e-07 59.7 53 56.6
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 1.4e-07 59.7 58 50.0
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 1.9e-07 59.3 56 57.1
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.9e-07 59.3 62 50.0
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.9e-07 59.3 62 50.0
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.9e-07 59.3 50 62.0
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 2.5e-07 58.9 49 59.2
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 2.5e-07 58.9 46 63.0
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 2.5e-07 58.9 44 68.2
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 3.2e-07 58.5 51 58.8
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 3.2e-07 58.5 51 58.8
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 3.2e-07 58.5 51 58.8
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 4.2e-07 58.2 62 48.4
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 4.2e-07 58.2 63 44.4
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 5.5e-07 57.8 50 62.0
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 5.5e-07 57.8 50 56.0
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 7.2e-07 57.4 50 56.0
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 1.2e-06 56.6 48 60.4
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 1.2e-06 56.6 48 60.4
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 2.1e-06 55.8 52 55.8
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 2.1e-06 55.8 46 65.2
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 4.6e-06 54.7 51 60.8
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 4.6e-06 54.7 49 57.1
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 4.6e-06 54.7 46 63.0
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 6.1e-06 54.3 49 55.1


User provided reference genes

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