Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb402660 Zea mays HOM05D002887 ORTHO05D003159 2.0e-178 629.0 330 100.0
Os03g0135400 Oryza sativa ssp. japonica HOM05D002887 ORTHO05D003159 3.0e-121 439.1 286 80.1
HPP92_026887 Vanilla planifolia HOM05D002887 ORTHO05D003159 2.0e-85 320.1 286 60.5
HPP92_003489 Vanilla planifolia HOM05D002887 ORTHO05D003159 1.1e-83 314.3 274 61.3
Cpa.g.sc20.128 Carica papaya HOM05D002887 ORTHO05D003159 1.7e-76 290.4 267 56.6
Ciclev10028005m.g Citrus clementina HOM05D002887 ORTHO05D003159 2.1e-74 283.5 267 55.4
AUR62012987 Chenopodium quinoa HOM05D002887 ORTHO05D003159 2.3e-73 280.0 267 55.1
CSS0044899 Camellia sinensis var. sinensis HOM05D002887 ORTHO05D003159 3.9e-73 279.3 267 55.1
Sabra04G0120900 Salix brachista HOM05D002887 ORTHO05D003159 6.7e-73 278.5 267 53.9
Prupe.8G170700 Prunus persica HOM05D002887 ORTHO05D003159 1.1e-72 277.7 267 53.9
arahy.Tifrunner.gnm1.ann1.DJ9YQ7 Arachis hypogaea HOM05D002887 ORTHO05D003159 2.6e-72 276.6 267 54.7
arahy.Tifrunner.gnm1.ann1.HJG5YQ Arachis hypogaea HOM05D002887 ORTHO05D003159 2.6e-72 276.6 267 54.7
Nn6g31882 Nelumbo nucifera HOM05D002887 ORTHO05D003159 3.3e-72 276.2 258 55.0
Phvul.007G016400 Phaseolus vulgaris HOM05D002887 ORTHO05D003159 5.7e-72 275.4 267 55.8
Potri.004G179571 Populus trichocarpa HOM05D002887 ORTHO05D003159 5.7e-72 275.4 267 53.6
Manes.11G098300 Manihot esculenta HOM05D002887 ORTHO05D003159 7.4e-72 275.0 267 53.6
PGR142G2418 Punica granatum HOM05D002887 ORTHO05D003159 9.7e-72 274.6 267 53.9
Actinidia20539 Actinidia chinensis HOM05D002887 ORTHO05D003159 1.3e-71 274.2 267 54.7
Lj5g0021290 Lotus japonicus HOM05D002887 ORTHO05D003159 1.7e-71 273.9 286 53.1
Glyma.20G105000 Glycine max HOM05D002887 ORTHO05D003159 4.8e-71 272.3 267 55.8
Lj5A175G92 Lonicera japonica HOM05D002887 ORTHO05D003159 8.2e-71 271.6 267 53.9
EL10Ac9g21324 Beta vulgaris HOM05D002887 ORTHO05D003159 1.1e-70 271.2 267 54.3
Potri.009G139500 Populus trichocarpa HOM05D002887 ORTHO05D003159 1.1e-70 271.2 267 53.2
CANSAT25G0878 Cannabis sativa HOM05D002887 ORTHO05D003159 2.4e-70 270.0 267 53.9
TAR625G0093 Trochodendron aralioides HOM05D002887 ORTHO05D003159 5.3e-70 268.9 279 53.0
Lalb_Chr06g0163831 Lupinus albus HOM05D002887 ORTHO05D003159 7.0e-70 268.5 267 53.6
RcHm_v2.0_Chr6g0279151 Rosa chinensis HOM05D002887 ORTHO05D003159 1.2e-69 267.7 267 52.4
Thecc.02G053100 Theobroma cacao HOM05D002887 ORTHO05D003159 1.2e-69 267.7 267 51.7
CsaV3_7G001330 Cucumis sativus L. HOM05D002887 ORTHO05D003159 2.6e-69 266.5 264 54.2
Eucgr.I01466 Eucalyptus grandis HOM05D002887 ORTHO05D003159 2.6e-69 266.5 267 54.7
MD05G1127000 Malus domestica HOM05D002887 ORTHO05D003159 2.6e-69 266.5 268 51.9
VMungo0720G3147 Vigna mungo HOM05D002887 ORTHO05D003159 3.5e-69 266.2 267 54.3
Medtr1g114010 Medicago truncatula HOM05D002887 ORTHO05D003159 7.7e-69 265.0 267 52.8
GSVIVG01023957001 Vitis vinifera HOM05D002887 ORTHO05D003159 1.3e-68 264.2 267 52.1
Ah.01g023360 Amaranthus hybridus HOM05D002887 ORTHO05D003159 2.2e-68 263.5 267 53.2
vmacro02299 Vaccinium macrocarpon HOM05D002887 ORTHO05D003159 2.2e-68 263.5 267 53.2
Gorai.008G038000 Gossypium raimondii HOM05D002887 ORTHO05D003159 3.8e-68 262.7 267 50.2
Rhsim11G0194600 Rhododendron simsii HOM05D002887 ORTHO05D003159 6.5e-68 261.9 276 52.2
Gohir.D12G036800 Gossypium hirsutum HOM05D002887 ORTHO05D003159 8.5e-68 261.5 267 49.8
Gohir.A12G035800 Gossypium hirsutum HOM05D002887 ORTHO05D003159 1.1e-67 261.2 267 50.6
MSTRG.19965 Avicennia marina HOM05D002887 ORTHO05D003159 1.9e-67 260.4 270 53.3
CiPaw.05G086400 Carya illinoinensis HOM05D002887 ORTHO05D003159 1.9e-67 260.4 268 53.4
TPR.G2454 Trifolium pratense HOM05D002887 ORTHO05D003159 2.5e-67 260.0 267 51.3
Atru.chr5.3466 Acer truncatum HOM05D002887 ORTHO05D003159 4.2e-67 259.2 267 51.3
Cc09_g10430 Coffea canephora HOM05D002887 ORTHO05D003159 4.2e-67 259.2 283 50.5
Ca_03284_v3 Cicer arietinum L. HOM05D002887 ORTHO05D003159 5.5e-67 258.8 267 50.9
Nitab4.5_0004557g0010 Nicotiana tabacum HOM05D002887 ORTHO05D003159 7.2e-67 258.5 267 50.6
Nitab4.5_0003679g0010 Nicotiana tabacum HOM05D002887 ORTHO05D003159 9.4e-67 258.1 267 50.2
Solyc01g111890.3 Solanum lycopersicum HOM05D002887 ORTHO05D003159 1.6e-66 257.3 267 50.2
FAN15G2445 Fragaria x ananassa HOM05D002887 ORTHO05D003159 2.7e-66 256.5 267 51.3
Sc08g0002650 Simmondsia chinensis HOM05D002887 ORTHO05D003159 2.7e-66 256.5 267 52.8
FvH4_2g15790 Fragaria vesca HOM05D002887 ORTHO05D003159 1.4e-65 254.2 267 50.9
FAN24G2689 Fragaria x ananassa HOM05D002887 ORTHO05D003159 1.4e-65 254.2 267 50.9
Migut.B00042 Erythranthe guttata HOM05D002887 ORTHO05D003159 1.8e-65 253.8 288 51.4
FAN27G1571 Fragaria x ananassa HOM05D002887 ORTHO05D003159 5.2e-65 252.3 266 50.8
Peaxi162Scf00362g00430 Petunia axillaris HOM05D002887 ORTHO05D003159 8.8e-65 251.5 267 50.6
CAN.G588.111 Capsicum annuum HOM05D002887 ORTHO05D003159 1.1e-64 251.1 267 48.3
Aqoxy6G01915 Aquilegia oxysepala HOM05D002887 ORTHO05D003159 1.5e-64 250.8 267 49.4
ATR0661G100 Amborella trichopoda HOM05D002887 ORTHO05D003159 9.7e-64 248.1 267 53.2
CiPaw.06G119200 Carya illinoinensis HOM05D002887 ORTHO05D003159 2.8e-63 246.5 276 50.7
TWI75G1235 Tripterygium wilfordii HOM05D002887 ORTHO05D003159 2.8e-63 246.5 267 50.2
FAN20G1407 Fragaria x ananassa HOM05D002887 ORTHO05D003159 6.3e-63 245.4 293 47.1
TWI79G0907 Tripterygium wilfordii HOM05D002887 ORTHO05D003159 6.3e-63 245.4 279 49.5
Hund00008 Selenicereus undatus HOM05D002887 ORTHO05D003159 1.8e-62 243.8 309 46.0
PSO675G9002 Papaver somniferum HOM05D002887 ORTHO05D003159 4.1e-62 242.7 269 47.6
PGSC0003DMG400018645 Solanum tuberosum HOM05D002887 ORTHO05D003159 4.1e-62 242.7 267 47.6
PSO541G1018 Papaver somniferum HOM05D002887 ORTHO05D003159 7.0e-62 241.9 269 48.0
COL.COLO4_18011 Corchorus olitorius HOM05D002887 ORTHO05D003159 1.2e-61 241.1 269 49.4
Cfa005310 Carpinus fangiana HOM05D002887 ORTHO05D003159 2.0e-61 240.4 268 51.1
CDE05G0350 Ceratophyllum demersum HOM05D002887 ORTHO05D003159 2.0e-61 240.4 265 50.9
SalBow1G7852 Salvia bowleyana HOM05D002887 ORTHO05D003159 2.6e-61 240.0 268 50.7
QL11p052640 Quercus lobata HOM05D002887 ORTHO05D003159 7.7e-61 238.4 269 49.8
CDE05G3170 Ceratophyllum demersum HOM05D002887 ORTHO05D003159 1.3e-60 237.7 265 50.9
Sopen01g053930 Solanum pennellii HOM05D002887 ORTHO05D003159 1.7e-60 237.3 267 46.8
AUR62009999 Chenopodium quinoa HOM05D002887 ORTHO05D003159 2.2e-60 236.9 222 55.9
ECA246G2827 Erigeron canadensis HOM05D002887 ORTHO05D003159 1.9e-59 233.8 267 46.8
SGA_v2.0_scaffold32G13321 Striga asiatica HOM05D002887 ORTHO05D003159 1.4e-57 227.6 322 43.2
ClCG02G003820 Citrullus lanatus HOM05D002887 ORTHO05D003159 4.0e-57 226.1 223 53.8
Lsat_1_v5_gn_3_47320 Lactuca sativa HOM05D002887 ORTHO05D003159 5.7e-56 222.2 269 47.6
HanXRQChr17g0543831 Helianthus annuus HOM05D002887 ORTHO05D003159 9.8e-56 221.5 267 45.7
unitig_37.g12833 Utricularia gibba HOM05D002887 ORTHO05D003159 9.8e-56 221.5 267 46.8
Duzib248G0120 Durio zibethinus HOM05D002887 ORTHO05D003159 6.3e-55 218.8 226 50.9
Oeu029657.1 Olea europaea HOM05D002887 ORTHO05D003159 8.3e-55 218.4 216 53.7
THA.LOC104804318 Tarenaya hassleriana HOM05D002887 ORTHO05D003159 5.4e-54 215.7 268 45.9
AT2G17020 Arabidopsis thaliana HOM05D002887 ORTHO05D003159 7.0e-54 215.3 280 42.9
CARHR107340 Cardamine hirsuta HOM05D002887 ORTHO05D003159 7.0e-54 215.3 265 44.5
DCAR_022829 Daucus carota HOM05D002887 ORTHO05D003159 2.0e-53 213.8 223 52.0
BcaC04g22994 Brassica carinata HOM05D002887 ORTHO05D003159 7.7e-53 211.8 267 45.3
C09p13220 Brassica napus HOM05D002887 ORTHO05D003159 7.7e-53 211.8 267 45.3
BolC9t54215H Brassica oleracea HOM05D002887 ORTHO05D003159 7.7e-53 211.8 267 45.3
Dinv14138 Davidia involucrata HOM05D002887 ORTHO05D003159 7.7e-53 211.8 226 50.0
A09p11180 Brassica napus HOM05D002887 ORTHO05D003159 1.7e-52 210.7 267 45.3
Aa31LG8G14210 Aethionema arabicum HOM05D002887 ORTHO05D003159 5.0e-52 209.1 279 43.0
BraA09t36760Z Brassica rapa HOM05D002887 ORTHO05D003159 5.0e-52 209.1 267 45.3
Thhalv10022585m.g Eutrema salsugineum HOM05D002887 ORTHO05D003159 5.0e-52 209.1 280 42.5
Sp3g30310 Schrenkiella parvula HOM05D002887 ORTHO05D003159 1.1e-51 208.0 267 43.4
BcaB07g31745 Brassica carinata HOM05D002887 ORTHO05D003159 4.2e-51 206.1 280 42.1
Carub.0003s3090 Capsella rubella HOM05D002887 ORTHO05D003159 5.5e-51 205.7 267 42.7
AL3G49810 Arabidopsis lyrata HOM05D002887 ORTHO05D003159 4.7e-50 202.6 280 41.4
SEGI_36055 Sequoiadendron giganteum HOM05D002887 ORTHO05D003159 8.0e-50 201.8 273 44.7
Duzib132G0895 Durio zibethinus HOM05D002887 ORTHO05D003159 1.5e-48 197.6 267 41.6
TWI79G0472 Tripterygium wilfordii HOM05D002887 ORTHO05D003159 3.8e-44 183.0 265 41.9
GSVIVG01023956001 Vitis vinifera HOM05D002887 ORTHO05D003159 1.8e-38 164.1 163 52.8
Pp3c16_16630 Physcomitrium patens HOM05D002887 ORTHO05D003159 6.8e-33 145.6 266 39.1
Haze_02083 Corylus avellana HOM05D002887 ORTHO05D003159 4.4e-32 142.9 267 37.1
AagrBONN_evm.TU.Sc2ySwM_368.912 Anthoceros agrestis HOM05D002887 ORTHO05D003159 3.2e-30 136.7 270 37.8
BcaC08g43637 Brassica carinata HOM05D002887 ORTHO05D003159 8.3e-23 112.1 272 34.9
C06p10530 Brassica napus HOM05D002887 ORTHO05D003159 8.3e-23 112.1 272 34.9
BolC6t36133H Brassica oleracea HOM05D002887 ORTHO05D003159 8.3e-23 112.1 272 34.9
A06p00120 Brassica napus HOM05D002887 ORTHO05D003159 1.9e-22 110.9 272 34.6
Oeu052878.1 Olea europaea HOM05D002887 ORTHO05D003159 1.9e-22 110.9 277 30.0
BraA06t23230Z Brassica rapa HOM05D002887 ORTHO05D003159 2.4e-22 110.5 272 34.6
Psat6g232960 Pisum sativum HOM05D002887 ORTHO05D003159 4.1e-22 109.8 116 51.7
Sed0003666 Sechium edule HOM05D002887 ORTHO05D003159 1.6e-21 107.8 113 52.2
Cfa016970 Carpinus fangiana HOM05D002887 ORTHO05D003159 3.5e-21 106.7 272 34.2
Haze_09925 Corylus avellana HOM05D002887 ORTHO05D003159 4.6e-21 106.3 272 34.2
Thhalv10011328m.g Eutrema salsugineum HOM05D002887 ORTHO05D003159 1.7e-20 104.4 273 34.1
MD11G1047600 Malus domestica HOM05D002887 ORTHO05D003159 1.7e-20 104.4 267 31.1
Sp1g41210 Schrenkiella parvula HOM05D002887 ORTHO05D003159 2.3e-20 104.0 274 35.4
GSVIVG01014858001 Vitis vinifera HOM05D002887 ORTHO05D003159 2.3e-20 104.0 269 30.9
Carub.0001s4411 Capsella rubella HOM05D002887 ORTHO05D003159 3.9e-20 103.2 273 34.1
Aa31LG10G620 Aethionema arabicum HOM05D002887 ORTHO05D003159 5.1e-20 102.8 279 32.6
Migut.H01703 Erythranthe guttata HOM05D002887 ORTHO05D003159 5.1e-20 102.8 286 29.7
Ciclev10007786m.g Citrus clementina HOM05D002887 ORTHO05D003159 6.6e-20 102.4 282 33.3
AL1G63640 Arabidopsis lyrata HOM05D002887 ORTHO05D003159 1.9e-19 100.9 274 35.4
DCAR_016809 Daucus carota HOM05D002887 ORTHO05D003159 4.3e-19 99.8 268 29.9
MELO3C013321.2 Cucumis melo HOM05D002887 ORTHO05D003159 5.6e-19 99.4 97 55.7
Rhsim04G0006800 Rhododendron simsii HOM05D002887 ORTHO05D003159 5.6e-19 99.4 267 31.1
Zm00001eb199550 Zea mays HOM05D002887 ORTHO05D003159 5.6e-19 99.4 267 32.2
Dinv19635 Davidia involucrata HOM05D002887 ORTHO05D003159 7.3e-19 99.0 272 31.6
AT1G55590 Arabidopsis thaliana HOM05D002887 ORTHO05D003159 9.5e-19 98.6 274 33.9
Ah.05g174420 Amaranthus hybridus HOM05D002887 ORTHO05D003159 1.6e-18 97.8 100 51.0
THA.LOC104810311 Tarenaya hassleriana HOM05D002887 ORTHO05D003159 1.6e-18 97.8 273 32.6
MSTRG.14532 Avicennia marina HOM05D002887 ORTHO05D003159 6.2e-18 95.9 275 31.6
Lj1C902G8 Lonicera japonica HOM05D002887 ORTHO05D003159 6.2e-18 95.9 269 30.5
MBI14_g10260_MAGBIO Magnolia biondii HOM05D002887 ORTHO05D003159 1.4e-17 94.7 275 29.8
CSS0039257 Camellia sinensis var. sinensis HOM05D002887 ORTHO05D003159 3.1e-17 93.6 272 30.9
HPP92_018919 Vanilla planifolia HOM05D002887 ORTHO05D003159 4.0e-17 93.2 277 31.4
SGA_v2.0_scaffold49G18166 Striga asiatica HOM05D002887 ORTHO05D003159 5.2e-17 92.8 281 30.2
vmacro09794 Vaccinium macrocarpon HOM05D002887 ORTHO05D003159 5.2e-17 92.8 271 28.8
Cc05_g15820 Coffea canephora HOM05D002887 ORTHO05D003159 1.2e-16 91.7 271 29.2
Atru.chr2.3909 Acer truncatum HOM05D002887 ORTHO05D003159 5.8e-16 89.4 268 30.6
RcHm_v2.0_Chr5g0074291 Rosa chinensis HOM05D002887 ORTHO05D003159 1.7e-15 87.8 274 29.6
SMO343G0076 Selaginella moellendorffii HOM05D002887 ORTHO05D003159 4.9e-15 86.3 267 31.8
TWI39G1273 Tripterygium wilfordii HOM05D002887 ORTHO05D003159 1.1e-14 85.1 263 30.4
BcaB07g33199 Brassica carinata HOM05D002887 ORTHO05D003159 1.9e-14 84.3 202 33.7
Eucgr.J00763 Eucalyptus grandis HOM05D002887 ORTHO05D003159 1.9e-14 84.3 273 29.3
Nitab4.5_0000294g0200 Nicotiana tabacum HOM05D002887 ORTHO05D003159 1.9e-14 84.3 264 29.5
CSS0049070 Camellia sinensis var. sinensis HOM05D002887 ORTHO05D003159 2.4e-14 84.0 265 30.9
Sabra11G0137200 Salix brachista HOM05D002887 ORTHO05D003159 5.4e-14 82.8 254 28.3
Sed0024070 Sechium edule HOM05D002887 ORTHO05D003159 5.4e-14 82.8 276 28.3
Peaxi162Scf00232g00091 Petunia axillaris HOM05D002887 ORTHO05D003159 1.6e-13 81.3 270 28.5
Solyc07g066240.3 Solanum lycopersicum HOM05D002887 ORTHO05D003159 1.6e-13 81.3 272 28.7
Sopen07g034420 Solanum pennellii HOM05D002887 ORTHO05D003159 2.1e-13 80.9 272 28.7
PGR119G2044 Punica granatum HOM05D002887 ORTHO05D003159 3.5e-13 80.1 264 28.8
FAN21G1274 Fragaria x ananassa HOM05D002887 ORTHO05D003159 4.6e-13 79.7 272 30.9
Potri.011G169800 Populus trichocarpa HOM05D002887 ORTHO05D003159 7.8e-13 79.0 265 27.5
HanXRQChr11g0335231 Helianthus annuus HOM05D002887 ORTHO05D003159 1.7e-12 77.8 270 28.1
FvH4_3g41370 Fragaria vesca HOM05D002887 ORTHO05D003159 2.3e-12 77.4 272 30.5
FAN11G2314 Fragaria x ananassa HOM05D002887 ORTHO05D003159 2.3e-12 77.4 272 30.5
Lsat_1_v5_gn_7_116000 Lactuca sativa HOM05D002887 ORTHO05D003159 2.3e-12 77.4 266 27.4
ECA236G4850 Erigeron canadensis HOM05D002887 ORTHO05D003159 3.0e-12 77.0 270 25.9
Manes.06G049300 Manihot esculenta HOM05D002887 ORTHO05D003159 8.6e-12 75.5 279 30.5
FAN25G0222 Fragaria x ananassa HOM05D002887 ORTHO05D003159 1.5e-11 74.7 272 30.5
CAN.G623.93 Capsicum annuum HOM05D002887 ORTHO05D003159 2.5e-11 73.9 260 26.9
MD10G1130400 Malus domestica HOM05D002887 ORTHO05D003159 7.3e-11 72.4 83 44.6
Nitab4.5_0001235g0010 Nicotiana tabacum HOM05D002887 ORTHO05D003159 4.7e-10 69.7 264 26.1
CAN.G943.15 Capsicum annuum HOM05D002887 ORTHO05D003159 6.2e-10 69.3 260 27.3
MELO3C013232.2 Cucumis melo HOM05D002887 ORTHO05D003159 1.4e-09 68.2 274 25.5
CAN.G523.32 Capsicum annuum HOM05D002887 ORTHO05D003159 3.1e-09 67.0 216 29.2
ClCG09G021800 Citrullus lanatus HOM05D002887 ORTHO05D003159 3.1e-09 67.0 278 27.7
Zm00001eb022020 Zea mays HOM05D002149 ORTHO05D002154 3.1e-09 67.0 113 38.9
CAN.G623.83 Capsicum annuum HOM05D002887 ORTHO05D003159 6.8e-09 65.9 260 25.8
CAN.G623.97 Capsicum annuum HOM05D002887 ORTHO05D003159 1.5e-08 64.7 272 26.5
CsaV3_7G021230 Cucumis sativus L. HOM05D002887 ORTHO05D003159 2.0e-08 64.3 282 27.0
SEGI_23346 Sequoiadendron giganteum HOM05D002887 ORTHO05D003159 7.6e-08 62.4 117 35.9
Zm00001eb010350 Zea mays HOM05D003414 ORTHO05D003159 9.9e-08 62.0 157 33.1
Prupe.6G036600 Prunus persica HOM05D002887 ORTHO05D003159 2.4e-06 57.4 135 29.6
Os08g0499900 Oryza sativa ssp. japonica HOM05D002887 ORTHO05D003159 4.2e-06 56.6 139 28.1
ECA236G2003 Erigeron canadensis HOM05D002887 ORTHO05D003159 5.4e-06 56.2 156 26.3


User provided reference genes

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