Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb402590 Zea mays HOM05D008020 ORTHO05D010140 6.8e-60 233.8 119 100.0
Os03g0133100 Oryza sativa ssp. japonica HOM05D008020 ORTHO05D010140 6.2e-37 157.5 124 74.2
Rhsim06G0008300 Rhododendron simsii HOM05D008020 ORTHO05D010140 1.2e-19 100.1 107 55.1
Thecc.08G057500 Theobroma cacao HOM05D008020 ORTHO05D010140 7.7e-19 97.4 95 58.9
Nn6g31749 Nelumbo nucifera HOM05D008020 ORTHO05D010140 1.7e-18 96.3 78 65.4
Migut.C00948 Erythranthe guttata HOM05D008020 ORTHO05D010140 2.2e-18 95.9 79 68.4
Migut.C00952 Erythranthe guttata HOM05D008020 ORTHO05D010140 2.2e-18 95.9 79 68.4
Haze_22756 Corylus avellana HOM05D008020 ORTHO05D010140 5.0e-18 94.7 79 63.3
Actinidia29785 Actinidia chinensis HOM05D008020 ORTHO05D010140 2.5e-17 92.4 78 65.4
Oeu056212.1 Olea europaea HOM05D008020 ORTHO05D010140 2.5e-17 92.4 82 64.6
EL10Ac1g01981 Beta vulgaris HOM05D008020 ORTHO05D010140 9.4e-17 90.5 79 65.8
COL.COLO4_00185 Corchorus olitorius HOM05D008020 ORTHO05D010140 9.4e-17 90.5 97 54.6
COL.COLO4_03997 Corchorus olitorius HOM05D008020 ORTHO05D010140 9.4e-17 90.5 97 54.6
Gohir.A01G106700 Gossypium hirsutum HOM05D008020 ORTHO05D010140 1.6e-16 89.7 79 60.8
Gohir.D01G093200 Gossypium hirsutum HOM05D008020 ORTHO05D010140 2.1e-16 89.4 79 60.8
Manes.05G135100 Manihot esculenta HOM05D008020 ORTHO05D010140 2.1e-16 89.4 79 64.6
Gorai.002G118600 Gossypium raimondii HOM05D008020 ORTHO05D010140 2.7e-16 89.0 79 60.8
SalBow7G2452 Salvia bowleyana HOM05D008020 ORTHO05D010140 2.7e-16 89.0 72 69.4
Glyma.06G019000 Glycine max HOM05D008020 ORTHO05D010140 7.9e-16 87.4 77 62.3
Ah.00g000390 Amaranthus hybridus HOM05D008020 ORTHO05D010140 1.4e-15 86.7 79 65.8
MD15G1003000 Malus domestica HOM05D008020 ORTHO05D010140 1.8e-15 86.3 75 66.7
ClCG11G018630 Citrullus lanatus HOM05D008020 ORTHO05D010140 3.9e-15 85.1 111 52.3
Glyma.04G018700 Glycine max HOM05D008020 ORTHO05D010140 6.7e-15 84.3 77 61.0
RcHm_v2.0_Chr6g0304161 Rosa chinensis HOM05D008020 ORTHO05D010140 8.8e-15 84.0 79 63.3
Eucgr.F03547 Eucalyptus grandis HOM05D008020 ORTHO05D010140 1.1e-14 83.6 76 60.5
Lsat_1_v5_gn_9_44980 Lactuca sativa HOM05D008020 ORTHO05D010140 1.5e-14 83.2 76 57.9
CARHR284890 Cardamine hirsuta HOM05D008020 ORTHO05D010140 2.0e-14 82.8 92 52.2
Psat5g011800 Pisum sativum HOM05D008020 ORTHO05D010140 2.0e-14 82.8 77 58.4
Cfa014061 Carpinus fangiana HOM05D008020 ORTHO05D010140 2.5e-14 82.4 72 62.5
CDE05G0785 Ceratophyllum demersum HOM05D008020 ORTHO05D010140 2.5e-14 82.4 82 57.3
PSO210G7351 Papaver somniferum HOM05D008020 ORTHO05D010140 3.3e-14 82.0 79 57.0
unitig_0.g2104 Utricularia gibba HOM05D008020 ORTHO05D010140 3.3e-14 82.0 81 60.5
VMungo1309G2936 Vigna mungo HOM05D008020 ORTHO05D010140 3.3e-14 82.0 76 59.2
HanXRQChr15g0492771 Helianthus annuus HOM05D008020 ORTHO05D010140 5.7e-14 81.3 110 46.4
TWI56G1414 Tripterygium wilfordii HOM05D008020 ORTHO05D010140 5.7e-14 81.3 79 60.8
Carub.0008s0691 Capsella rubella HOM05D008020 ORTHO05D010140 7.4e-14 80.9 84 56.0
Phvul.009G021900 Phaseolus vulgaris HOM05D008020 ORTHO05D010140 7.4e-14 80.9 77 58.4
MELO3C017014.2 Cucumis melo HOM05D008020 ORTHO05D010140 1.3e-13 80.1 81 59.3
Lj1g0023017 Lotus japonicus HOM05D008020 ORTHO05D010140 1.7e-13 79.7 81 54.3
Sc26g0004630 Simmondsia chinensis HOM05D008020 ORTHO05D010140 2.2e-13 79.3 107 46.7
BolC3t15181H Brassica oleracea HOM05D008020 ORTHO05D010140 2.8e-13 79.0 93 48.4
BcaC01g05309 Brassica carinata HOM05D008020 ORTHO05D010140 3.7e-13 78.6 93 47.3
C03p28110 Brassica napus HOM05D008020 ORTHO05D010140 3.7e-13 78.6 94 48.9
FAN15G1770 Fragaria x ananassa HOM05D008020 ORTHO05D010140 3.7e-13 78.6 86 57.0
Medtr3g115170 Medicago truncatula HOM05D008020 ORTHO05D010140 3.7e-13 78.6 77 57.1
Ca_15441_v3 Cicer arietinum L. HOM05D008020 ORTHO05D010140 4.8e-13 78.2 77 58.4
SEGI_30631 Sequoiadendron giganteum HOM05D008020 ORTHO05D010140 4.8e-13 78.2 81 55.6
Lalb_Chr11g0061691 Lupinus albus HOM05D008020 ORTHO05D010140 6.3e-13 77.8 77 58.4
Sp7g08310 Schrenkiella parvula HOM05D008020 ORTHO05D010140 6.3e-13 77.8 93 49.5
BcaB01g03440 Brassica carinata HOM05D008020 ORTHO05D010140 8.2e-13 77.4 94 48.9
Duzib041G0109 Durio zibethinus HOM05D008020 ORTHO05D010140 8.2e-13 77.4 79 55.7
FvH4_2g37570 Fragaria vesca HOM05D008020 ORTHO05D010140 8.2e-13 77.4 87 56.3
Cpa.g.sc26.209 Carica papaya HOM05D008020 ORTHO05D010140 1.1e-12 77.0 78 56.4
TAR625G0930 Trochodendron aralioides HOM05D008020 ORTHO05D010140 1.4e-12 76.6 72 62.5
ECA232G3495 Erigeron canadensis HOM05D008020 ORTHO05D010140 1.8e-12 76.3 98 51.0
AT5G42290 Arabidopsis thaliana HOM05D008020 ORTHO05D010140 2.4e-12 75.9 111 45.0
AL8G19330 Arabidopsis lyrata HOM05D008020 ORTHO05D010140 6.9e-12 74.3 91 50.5
CSS0004036 Camellia sinensis var. sinensis HOM05D008020 ORTHO05D010140 9.1e-12 73.9 78 57.7
Thhalv10009649m.g Eutrema salsugineum HOM05D008020 ORTHO05D010140 1.2e-11 73.6 93 47.3
ATR0106G002 Amborella trichopoda HOM05D008020 ORTHO05D010140 2.6e-11 72.4 77 57.1
AUR62036888 Chenopodium quinoa HOM05D008020 ORTHO05D010140 3.4e-11 72.0 72 63.9
AUR62043558 Chenopodium quinoa HOM05D008020 ORTHO05D010140 3.4e-11 72.0 72 63.9
Thhalv10028031m.g Eutrema salsugineum HOM05D008020 ORTHO05D010140 5.9e-11 71.2 93 46.2
CSS0008844 Camellia sinensis var. sinensis HOM05D008020 ORTHO05D010140 1.3e-10 70.1 77 55.8
Atru.chr13.153 Acer truncatum HOM05D008020 ORTHO05D010140 1.1e-09 67.0 68 55.9
arahy.Tifrunner.gnm1.ann1.IQ4KFY Arachis hypogaea HOM05D008020 ORTHO05D010140 1.4e-09 66.6 79 53.2
CsaV3_4G037160 Cucumis sativus L. HOM05D008020 ORTHO05D010140 1.9e-09 66.2 71 56.3
Ciclev10003459m.g Citrus clementina HOM05D008020 ORTHO05D010140 6.1e-08 61.2 79 50.6
AagrBONN_evm.TU.Sc2ySwM_368.1603 Anthoceros agrestis HOM05D008020 ORTHO05D010140 2.3e-07 59.3 80 50.0
Aa31LG9G12400 Aethionema arabicum HOM05D008020 ORTHO05D010140 4.4e-06 55.1 79 46.8


User provided reference genes

Program Settings