Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 1.1e-256 889.4 456 100.0
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 4.6e-221 771.2 459 85.8
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 3.6e-157 558.9 444 63.7
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 7.9e-157 557.8 462 61.3
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 8.8e-156 554.3 456 63.8
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.6e-155 552.7 446 63.2
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 4.4e-155 552.0 430 62.6
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 3.7e-154 548.9 435 63.0
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.4e-153 547.0 454 61.2
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 1.8e-153 546.6 453 61.4
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 2.4e-153 546.2 452 61.5
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 5.3e-153 545.0 446 62.3
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 5.3e-153 545.0 454 61.0
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 1.2e-152 543.9 442 60.9
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 1.2e-152 543.9 442 60.9
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 1.5e-152 543.5 439 62.6
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 1.5e-152 543.5 454 62.1
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 4.5e-152 542.0 431 61.7
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 4.5e-152 542.0 444 62.2
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 5.9e-152 541.6 454 61.5
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.7e-151 540.0 443 62.5
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 6.5e-151 538.1 449 62.1
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.4e-150 537.0 447 62.2
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 3.2e-150 535.8 446 61.2
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 4.2e-150 535.4 429 62.9
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 7.2e-150 534.6 442 61.1
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 1.6e-149 533.5 434 60.1
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 3.6e-149 532.3 458 60.0
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 4.7e-149 531.9 470 58.5
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 7.9e-149 531.2 446 61.0
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 7.9e-149 531.2 454 59.5
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.0e-148 530.8 445 61.1
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.3e-148 529.6 454 59.3
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 6.7e-148 528.1 413 63.2
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 2.0e-147 526.6 445 60.9
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 9.7e-147 524.2 442 60.4
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 1.7e-146 523.5 443 58.7
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 2.2e-146 523.1 461 59.2
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 2.8e-146 522.7 441 59.2
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 6.3e-146 521.5 445 58.0
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 6.3e-146 521.5 454 58.4
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 6.3e-146 521.5 445 60.4
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 8.2e-146 521.2 430 60.5
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 1.4e-145 520.4 445 59.6
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.4e-145 520.4 429 60.6
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 1.4e-145 520.4 441 60.3
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 1.8e-145 520.0 458 58.1
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 4.1e-145 518.8 451 58.1
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 5.3e-145 518.5 485 56.3
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 5.3e-145 518.5 454 56.8
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 5.3e-145 518.5 454 57.7
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 5.3e-145 518.5 454 58.6
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 9.1e-145 517.7 441 59.9
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 1.2e-144 517.3 444 59.7
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 3.5e-144 515.8 471 56.9
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 4.5e-144 515.4 471 56.9
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 5.9e-144 515.0 454 57.5
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 7.7e-144 514.6 446 57.8
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 7.7e-144 514.6 386 64.8
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 7.7e-144 514.6 443 60.0
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 1.0e-143 514.2 446 57.6
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 1.0e-143 514.2 442 59.3
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.3e-143 513.8 447 58.2
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 1.3e-143 513.8 441 59.2
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 2.2e-143 513.1 445 57.8
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 2.2e-143 513.1 446 58.1
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 2.2e-143 513.1 444 58.1
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 2.2e-143 513.1 445 57.8
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 2.2e-143 513.1 449 56.1
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 2.9e-143 512.7 446 58.1
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.9e-143 512.7 454 58.6
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 3.8e-143 512.3 466 56.4
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 6.5e-143 511.5 420 62.6
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 1.1e-142 510.8 385 66.0
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 2.5e-142 509.6 447 57.7
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 2.5e-142 509.6 446 57.6
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 4.2e-142 508.8 448 57.6
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 5.5e-142 508.4 455 56.9
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 5.5e-142 508.4 443 58.2
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 5.5e-142 508.4 445 58.7
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 7.2e-142 508.1 453 57.2
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 3.6e-141 505.8 429 60.6
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 3.6e-141 505.8 496 54.0
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 3.6e-141 505.8 442 58.6
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 4.7e-141 505.4 446 57.0
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 6.1e-141 505.0 445 57.1
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 3.0e-140 502.7 446 57.2
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 4.0e-140 502.3 445 57.8
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 5.2e-140 501.9 463 56.8
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 6.7e-140 501.5 454 56.4
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 6.7e-140 501.5 556 49.6
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 6.7e-140 501.5 402 62.2
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 7.5e-139 498.0 454 55.9
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.3e-138 497.3 445 56.6
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 1.7e-138 496.9 454 55.7
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 1.7e-138 496.9 402 62.2
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 2.8e-138 496.1 454 55.5
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 2.8e-138 496.1 454 55.5
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 3.7e-138 495.7 454 55.5
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 4.8e-138 495.4 445 56.2
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.4e-137 493.8 446 57.2
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 2.4e-137 493.0 433 58.4
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 2.4e-137 493.0 433 58.4
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 7.0e-137 491.5 446 57.4
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 9.1e-137 491.1 454 55.3
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.2e-136 490.7 447 55.7
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 3.8e-135 485.7 465 53.8
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 5.5e-134 481.9 473 54.1
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 8.8e-132 474.6 430 56.3
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 9.8e-131 471.1 467 54.4
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 9.8e-131 471.1 447 54.8
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 5.4e-129 465.3 396 59.6
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 7.0e-129 464.9 465 51.8
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 7.7e-128 461.5 429 52.7
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 3.8e-127 459.1 452 53.5
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 5.5e-126 455.3 377 60.5
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 9.5e-126 454.5 450 52.7
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 4.0e-124 449.1 446 53.1
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 2.6e-123 446.4 397 57.9
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 3.4e-123 446.0 396 58.6
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 5.6e-118 428.7 447 49.9
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 7.5e-115 418.3 447 48.1
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.8e-113 413.7 435 48.3
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 7.5e-107 391.7 445 45.8
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.3e-106 391.0 352 57.4
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 4.7e-101 372.5 285 64.6
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 1.8e-100 370.5 462 47.6
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 7.1e-97 358.6 433 47.3
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 4.3e-94 349.4 252 68.7
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.4e-92 343.6 388 49.0
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 9.2e-89 331.6 446 43.0
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 2.1e-88 330.5 319 53.6
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 4.9e-82 309.3 275 59.6
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.8e-76 290.8 446 38.6
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.9e-73 280.8 290 49.3
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 5.8e-67 259.2 199 63.8
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 4.8e-53 213.0 312 40.1
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 6.5e-50 202.6 132 75.0
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 9.4e-49 198.7 158 60.8
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 7.4e-46 189.1 454 30.0
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 4.1e-44 183.3 138 65.9
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 9.1e-44 182.2 195 50.3
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 1.2e-40 171.8 186 48.9
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.1e-38 165.2 121 68.6
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 7.4e-38 162.5 101 82.2
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 6.3e-37 159.5 175 46.9
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 3.1e-28 130.6 93 68.8
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 2.1e-24 117.9 137 47.4
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 6.7e-23 112.8 120 53.3
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 7.0e-20 102.8 66 71.2
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 3.8e-18 97.1 111 46.8
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 9.1e-12 75.9 84 44.0
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 5.9e-11 73.2 63 57.1
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 2.3e-10 71.2 57 54.4
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 8.6e-10 69.3 75 48.0
Zm00001eb005240 Zea mays HOM05D004544 ORTHO05D443039 1.5e-09 68.6 155 38.1
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 8.0e-08 62.8 40 70.0
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 5.2e-07 60.1 77 40.3


User provided reference genes

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