Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb402440 Zea mays HOM05D006796 ORTHO05D008615 2.5e-131 472.2 261 100.0
Os03g0168200 Oryza sativa ssp. japonica HOM05D006796 ORTHO05D008615 5.6e-99 364.8 245 80.8
arahy.Tifrunner.gnm1.ann1.NP20FV Arachis hypogaea HOM05D006796 ORTHO05D008615 1.6e-77 293.5 201 72.1
arahy.Tifrunner.gnm1.ann1.R8NX8D Arachis hypogaea HOM05D006796 ORTHO05D008615 1.6e-77 293.5 201 72.1
TWI31G0717 Tripterygium wilfordii HOM05D006796 ORTHO05D008615 1.6e-77 293.5 200 73.5
VMungo1215G0648 Vigna mungo HOM05D006796 ORTHO05D008615 2.0e-75 286.6 205 69.3
Phvul.002G103200 Phaseolus vulgaris HOM05D006796 ORTHO05D008615 2.5e-75 286.2 205 68.8
Nn4g23271 Nelumbo nucifera HOM05D006796 ORTHO05D008615 2.2e-74 283.1 204 70.6
Eucgr.B03198 Eucalyptus grandis HOM05D006796 ORTHO05D008615 6.3e-74 281.6 229 65.1
Gorai.012G186400 Gossypium raimondii HOM05D006796 ORTHO05D008615 6.3e-74 281.6 200 70.0
Duzib268G1785 Durio zibethinus HOM05D006796 ORTHO05D008615 1.1e-73 280.8 200 69.5
Gohir.D04G191000 Gossypium hirsutum HOM05D006796 ORTHO05D008615 1.1e-73 280.8 200 70.0
Potri.010G164400 Populus trichocarpa HOM05D006796 ORTHO05D008615 1.1e-73 280.8 200 70.0
Thecc.02G339900 Theobroma cacao HOM05D006796 ORTHO05D008615 1.1e-73 280.8 197 71.1
CSS0026382 Camellia sinensis var. sinensis HOM05D006796 ORTHO05D008615 1.4e-73 280.4 198 70.2
Manes.05G105900 Manihot esculenta HOM05D006796 ORTHO05D008615 1.4e-73 280.4 209 67.5
PGR102G1583 Punica granatum HOM05D006796 ORTHO05D008615 3.1e-73 279.3 196 71.9
Cpa.g.sc1.63 Carica papaya HOM05D006796 ORTHO05D008615 6.9e-73 278.1 202 70.3
CiPaw.07G071700 Carya illinoinensis HOM05D006796 ORTHO05D008615 6.9e-73 278.1 234 63.2
Haze_11961 Corylus avellana HOM05D006796 ORTHO05D008615 9.1e-73 277.7 240 62.1
Sabra10G0124800 Salix brachista HOM05D006796 ORTHO05D008615 9.1e-73 277.7 200 69.0
Prupe.1G279300 Prunus persica HOM05D006796 ORTHO05D008615 1.2e-72 277.3 247 62.8
Glyma.01G052700 Glycine max HOM05D006796 ORTHO05D008615 1.5e-72 276.9 206 68.0
Lj2g0006920 Lotus japonicus HOM05D006796 ORTHO05D008615 1.5e-72 276.9 194 71.6
Atru.chr11.1722 Acer truncatum HOM05D006796 ORTHO05D008615 3.4e-72 275.8 238 60.9
CAN.G964.30 Capsicum annuum HOM05D006796 ORTHO05D008615 3.4e-72 275.8 195 70.8
FAN07G2185 Fragaria x ananassa HOM05D006796 ORTHO05D008615 5.9e-72 275.0 242 62.4
GSVIVG01012496001 Vitis vinifera HOM05D006796 ORTHO05D008615 5.9e-72 275.0 202 68.3
Lalb_Chr10g0098461 Lupinus albus HOM05D006796 ORTHO05D008615 7.7e-72 274.6 195 70.3
Glyma.02G111300 Glycine max HOM05D006796 ORTHO05D008615 1.7e-71 273.5 205 67.8
FvH4_4g30770 Fragaria vesca HOM05D006796 ORTHO05D008615 2.9e-71 272.7 194 70.1
FAN12G1163 Fragaria x ananassa HOM05D006796 ORTHO05D008615 2.9e-71 272.7 194 70.1
FAN22G2031 Fragaria x ananassa HOM05D006796 ORTHO05D008615 2.9e-71 272.7 194 70.1
PGSC0003DMG400028345 Solanum tuberosum HOM05D006796 ORTHO05D008615 3.8e-71 272.3 193 69.9
Hund25209 Selenicereus undatus HOM05D006796 ORTHO05D008615 5.0e-71 271.9 200 69.0
CsaV3_5G022970 Cucumis sativus L. HOM05D006796 ORTHO05D008615 6.5e-71 271.6 201 67.7
Hma1.2p1_0354F.1_g133830 Hydrangea macrophylla HOM05D006796 ORTHO05D008615 8.5e-71 271.2 198 70.2
RcHm_v2.0_Chr4g0439161 Rosa chinensis HOM05D006796 ORTHO05D008615 8.5e-71 271.2 192 70.3
CDE02G1750 Ceratophyllum demersum HOM05D006796 ORTHO05D008615 1.1e-70 270.8 200 67.5
Ciclev10032381m.g Citrus clementina HOM05D006796 ORTHO05D008615 1.1e-70 270.8 196 69.4
Nitab4.5_0000391g0260 Nicotiana tabacum HOM05D006796 ORTHO05D008615 1.1e-70 270.8 193 68.9
CiPaw.05G129900 Carya illinoinensis HOM05D006796 ORTHO05D008615 1.4e-70 270.4 222 64.4
TAR371G0712 Trochodendron aralioides HOM05D006796 ORTHO05D008615 1.4e-70 270.4 195 69.2
Ca_04876_v3 Cicer arietinum L. HOM05D006796 ORTHO05D008615 1.9e-70 270.0 199 66.8
Gohir.D04G190901 Gossypium hirsutum HOM05D006796 ORTHO05D008615 1.9e-70 270.0 199 67.8
Psat2g126440 Pisum sativum HOM05D006796 ORTHO05D008615 2.5e-70 269.6 255 56.1
Actinidia19934 Actinidia chinensis HOM05D006796 ORTHO05D008615 5.5e-70 268.5 240 60.4
TAR629G0550 Trochodendron aralioides HOM05D006796 ORTHO05D008615 5.5e-70 268.5 204 66.2
ClCG09G022060 Citrullus lanatus HOM05D006796 ORTHO05D008615 7.2e-70 268.1 200 66.5
Cc11_g12630 Coffea canephora HOM05D006796 ORTHO05D008615 9.4e-70 267.7 193 68.9
Sopen05g007830 Solanum pennellii HOM05D006796 ORTHO05D008615 1.2e-69 267.3 193 68.9
CANSAT64G1871 Cannabis sativa HOM05D006796 ORTHO05D008615 2.7e-69 266.2 196 67.3
Lj3A1033T56 Lonicera japonica HOM05D006796 ORTHO05D008615 3.6e-69 265.8 198 66.7
ECA234G4054 Erigeron canadensis HOM05D006796 ORTHO05D008615 6.1e-69 265.0 194 67.5
EL10Ac6g13260 Beta vulgaris HOM05D006796 ORTHO05D008615 7.9e-69 264.6 203 65.5
THA.LOC104805179 Tarenaya hassleriana HOM05D006796 ORTHO05D008615 7.9e-69 264.6 233 59.7
MD16G1067400 Malus domestica HOM05D006796 ORTHO05D008615 1.8e-68 263.5 192 69.3
Sc11g0002140 Simmondsia chinensis HOM05D006796 ORTHO05D008615 1.8e-68 263.5 203 65.5
Aqoxy3G00482 Aquilegia oxysepala HOM05D006796 ORTHO05D008615 2.3e-68 263.1 196 63.8
MSTRG.13431 Avicennia marina HOM05D006796 ORTHO05D008615 2.3e-68 263.1 198 65.7
MD13G1068600 Malus domestica HOM05D006796 ORTHO05D008615 3.0e-68 262.7 192 68.2
Dinv34092 Davidia involucrata HOM05D006796 ORTHO05D008615 3.9e-68 262.3 222 62.6
Peaxi162Scf00222g00236 Petunia axillaris HOM05D006796 ORTHO05D008615 5.1e-68 261.9 222 59.9
HPP92_016903 Vanilla planifolia HOM05D006796 ORTHO05D008615 6.7e-68 261.5 202 67.3
ATR0564G337 Amborella trichopoda HOM05D006796 ORTHO05D008615 8.8e-68 261.2 194 66.5
CARHR014360 Cardamine hirsuta HOM05D006796 ORTHO05D008615 1.5e-67 260.4 198 66.7
SalBow8G2627 Salvia bowleyana HOM05D006796 ORTHO05D008615 3.3e-67 259.2 198 64.1
Migut.L01249 Erythranthe guttata HOM05D006796 ORTHO05D008615 4.4e-67 258.8 198 63.6
Thhalv10008453m.g Eutrema salsugineum HOM05D006796 ORTHO05D008615 4.4e-67 258.8 237 60.3
MELO3C002984.2 Cucumis melo HOM05D006796 ORTHO05D008615 1.7e-66 256.9 239 57.7
TPR.G19931 Trifolium pratense HOM05D006796 ORTHO05D008615 2.2e-66 256.5 199 65.8
MSTRG.2332 Avicennia marina HOM05D006796 ORTHO05D008615 3.7e-66 255.8 198 64.6
Carub.0001s1368 Capsella rubella HOM05D006796 ORTHO05D008615 8.2e-66 254.6 192 66.7
AUR62032832 Chenopodium quinoa HOM05D006796 ORTHO05D008615 1.1e-65 254.2 203 64.5
AL1G25830 Arabidopsis lyrata HOM05D006796 ORTHO05D008615 1.4e-65 253.8 194 66.0
AT1G13990 Arabidopsis thaliana HOM05D006796 ORTHO05D008615 4.1e-65 252.3 192 65.6
C05p11750 Brassica napus HOM05D006796 ORTHO05D008615 5.3e-65 251.9 240 56.7
PSO478G1165 Papaver somniferum HOM05D006796 ORTHO05D008615 5.3e-65 251.9 193 64.8
SGA_v2.0_scaffold63G21639 Striga asiatica HOM05D006796 ORTHO05D008615 9.1e-65 251.1 199 64.3
PSO017G7370 Papaver somniferum HOM05D006796 ORTHO05D008615 1.2e-64 250.8 193 64.2
Lsat_1_v5_gn_4_10660 Lactuca sativa HOM05D006796 ORTHO05D008615 7.7e-64 248.1 232 59.1
QL03p069702 Quercus lobata HOM05D006796 ORTHO05D008615 5.0e-63 245.4 272 51.5
BcaC05g25295 Brassica carinata HOM05D006796 ORTHO05D008615 1.5e-62 243.8 190 64.7
BolC5t29921H Brassica oleracea HOM05D006796 ORTHO05D008615 7.2e-62 241.5 210 60.0
Aa31LG1G1040 Aethionema arabicum HOM05D006796 ORTHO05D008615 1.6e-61 240.4 236 55.9
BraA06t24185Z Brassica rapa HOM05D006796 ORTHO05D008615 1.0e-60 237.7 223 56.5
Cfa008932 Carpinus fangiana HOM05D006796 ORTHO05D008615 2.3e-60 236.5 348 42.8
vmacro01347 Vaccinium macrocarpon HOM05D006796 ORTHO05D008615 4.0e-60 235.7 221 57.0
AUR62005838 Chenopodium quinoa HOM05D006796 ORTHO05D008615 4.4e-59 232.3 183 65.6
Oeu055099.3 Olea europaea HOM05D006796 ORTHO05D008615 9.7e-59 231.1 259 49.4
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 1.4e-57 227.3 193 60.6
Mapoly0042s0065 Marchantia polymorpha HOM05D006796 ORTHO05D008615 1.6e-56 223.8 210 54.8
COL.COLO4_27978 Corchorus olitorius HOM05D006796 ORTHO05D008615 1.0e-55 221.1 245 52.7
A06p09990 Brassica napus HOM05D006796 ORTHO05D008615 5.0e-55 218.8 228 53.9
HanXRQChr12g0379181 Helianthus annuus HOM05D006796 ORTHO05D008615 5.2e-52 208.8 190 57.9
Nitab4.5_0004906g0020 Nicotiana tabacum HOM05D006796 ORTHO05D008615 6.8e-52 208.4 146 69.2
Sed0012383 Sechium edule HOM05D006796 ORTHO05D008615 1.8e-49 200.3 159 61.0
arahy.Tifrunner.gnm1.ann1.T4YGUP Arachis hypogaea HOM05D006796 ORTHO05D008615 5.0e-47 192.2 151 66.9
SMO271G0176 Selaginella moellendorffii HOM05D006796 ORTHO05D008615 4.0e-44 182.6 207 52.2
CBR_g41640 Chara braunii HOM05D006796 ORTHO05D008615 7.5e-43 178.3 230 46.1
Gohir.1Z049816 Gossypium hirsutum HOM05D006796 ORTHO05D008615 1.3e-42 177.6 125 71.2
Actinidia31964 Actinidia chinensis HOM05D006796 ORTHO05D008615 9.2e-41 171.4 129 69.0
Potri.008G090900 Populus trichocarpa HOM05D006796 ORTHO05D008615 8.6e-39 164.9 182 52.7
Medtr5g042520 Medicago truncatula HOM05D006796 ORTHO05D008615 1.8e-33 147.1 124 63.7
Hma1.2p1_0354F.1_g133820 Hydrangea macrophylla HOM05D006796 ORTHO05D008615 8.0e-29 131.7 102 65.7
Rhsim12G0078900 Rhododendron simsii HOM05D006796 ORTHO05D008615 4.0e-28 129.4 308 33.1
AagrBONN_evm.TU.Sc2ySwM_344.1473 Anthoceros agrestis HOM05D006796 ORTHO05D008615 2.2e-26 123.6 137 48.9
Solyc05g013060.4 Solanum lycopersicum HOM05D006796 ORTHO05D008615 2.2e-26 123.6 91 67.0
CDE09G0941 Ceratophyllum demersum HOM05D006796 ORTHO05D008615 1.3e-23 114.4 74 70.3
SEGI_14917 Sequoiadendron giganteum HOM05D006796 ORTHO05D008615 3.9e-23 112.8 73 74.0
Nn2g13928 Nelumbo nucifera HOM05D006796 ORTHO05D008615 3.2e-17 93.2 96 56.2
PRCOL_00001264 Prasinoderma coloniale HOM05D006796 ORTHO05D008615 3.6e-13 79.7 230 31.3
vmacro01341 Vaccinium macrocarpon HOM05D006796 ORTHO05D008615 3.1e-12 76.6 144 37.5
Oeu021077.1 Olea europaea HOM05D006796 ORTHO05D008615 1.7e-10 70.9 240 29.2
Gohir.A12G247950 Gossypium hirsutum HOM05D006796 ORTHO05D008615 1.6e-08 64.3 53 56.6


User provided reference genes

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