Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb402290 Zea mays HOM05D006772 ORTHO05D008367 3.0e-58 228.4 124 100.0
Os03g0170100 Oryza sativa ssp. japonica HOM05D006772 ORTHO05D008367 1.0e-37 160.2 125 69.6
Nn6g33607 Nelumbo nucifera HOM05D006772 ORTHO05D008367 8.0e-19 97.4 109 48.6
MBI02_g14426_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 1.8e-18 96.3 125 49.6
CSS0038918 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 2.3e-18 95.9 109 51.4
CSS0016213 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 5.2e-18 94.7 109 50.5
Sabra03G0061100 Salix brachista HOM05D006772 ORTHO05D008367 3.4e-17 92.0 114 50.0
Sc01g0007510 Simmondsia chinensis HOM05D006772 ORTHO05D008367 1.3e-16 90.1 108 50.0
Potri.003G091400 Populus trichocarpa HOM05D006772 ORTHO05D008367 1.7e-16 89.7 116 50.0
Peaxi162Scf00460g00052 Petunia axillaris HOM05D006772 ORTHO05D008367 2.8e-16 89.0 108 51.9
Cc08_g02570 Coffea canephora HOM05D006772 ORTHO05D008367 3.7e-16 88.6 112 48.2
Nn1g00537 Nelumbo nucifera HOM05D006772 ORTHO05D008367 3.7e-16 88.6 119 47.1
PGSC0003DMG400043394 Solanum tuberosum HOM05D006772 ORTHO05D008367 3.7e-16 88.6 107 48.6
Gohir.A03G001600 Gossypium hirsutum HOM05D006772 ORTHO05D008367 6.3e-16 87.8 110 45.5
PGR042G0478 Punica granatum HOM05D006772 ORTHO05D008367 8.3e-16 87.4 125 44.0
HPP92_011259 Vanilla planifolia HOM05D006772 ORTHO05D008367 8.3e-16 87.4 131 42.7
Solyc08g077020.1 Solanum lycopersicum HOM05D006772 ORTHO05D008367 1.1e-15 87.0 107 47.7
FvH4_5g21990 Fragaria vesca HOM05D006772 ORTHO05D008367 1.4e-15 86.7 115 47.0
FAN18G1611 Fragaria x ananassa HOM05D006772 ORTHO05D008367 1.4e-15 86.7 115 47.0
Sopen08g025600 Solanum pennellii HOM05D006772 ORTHO05D008367 1.4e-15 86.7 107 47.7
TAR375G0733 Trochodendron aralioides HOM05D006772 ORTHO05D008367 1.4e-15 86.7 114 48.2
Eucgr.D02187 Eucalyptus grandis HOM05D006772 ORTHO05D008367 1.8e-15 86.3 117 43.6
FAN08G3182 Fragaria x ananassa HOM05D006772 ORTHO05D008367 1.8e-15 86.3 115 46.1
FAN13G1934 Fragaria x ananassa HOM05D006772 ORTHO05D008367 1.8e-15 86.3 115 47.0
Potri.001G142700 Populus trichocarpa HOM05D006772 ORTHO05D008367 2.4e-15 85.9 115 48.7
RcHm_v2.0_Chr7g0209491 Rosa chinensis HOM05D006772 ORTHO05D008367 2.4e-15 85.9 115 47.8
DCAR_024967 Daucus carota HOM05D006772 ORTHO05D008367 4.1e-15 85.1 129 43.4
CiPaw.12G062700 Carya illinoinensis HOM05D006772 ORTHO05D008367 5.4e-15 84.7 120 45.0
FAN04G3098 Fragaria x ananassa HOM05D006772 ORTHO05D008367 5.4e-15 84.7 115 46.1
Manes.17G012000 Manihot esculenta HOM05D006772 ORTHO05D008367 7.0e-15 84.3 117 47.0
Aqoxy3G02398 Aquilegia oxysepala HOM05D006772 ORTHO05D008367 1.2e-14 83.6 114 47.4
Ciclev10033079m.g Citrus clementina HOM05D006772 ORTHO05D008367 1.2e-14 83.6 109 45.0
Sabra01G0111500 Salix brachista HOM05D006772 ORTHO05D008367 1.2e-14 83.6 115 47.0
Cfa012424 Carpinus fangiana HOM05D006772 ORTHO05D008367 2.0e-14 82.8 110 48.2
Haze_08246 Corylus avellana HOM05D006772 ORTHO05D008367 2.7e-14 82.4 123 42.3
Prupe.5G037100 Prunus persica HOM05D006772 ORTHO05D008367 2.7e-14 82.4 113 49.6
arahy.Tifrunner.gnm1.ann1.6N9PAN Arachis hypogaea HOM05D006772 ORTHO05D008367 3.5e-14 82.0 112 46.4
arahy.Tifrunner.gnm1.ann1.WNGN5W Arachis hypogaea HOM05D006772 ORTHO05D008367 3.5e-14 82.0 112 46.4
Duzib205G2036 Durio zibethinus HOM05D006772 ORTHO05D008367 3.5e-14 82.0 109 45.9
Glyma.05G111700 Glycine max HOM05D006772 ORTHO05D008367 3.5e-14 82.0 96 47.9
Hma1.2p1_0991F.1_g245070 Hydrangea macrophylla HOM05D006772 ORTHO05D008367 3.5e-14 82.0 106 47.2
MD16G1275100 Malus domestica HOM05D006772 ORTHO05D008367 3.5e-14 82.0 111 47.7
QL12p005804 Quercus lobata HOM05D006772 ORTHO05D008367 3.5e-14 82.0 112 44.6
Eucgr.E00285 Eucalyptus grandis HOM05D006772 ORTHO05D008367 4.5e-14 81.6 116 43.1
Gohir.D03G170700 Gossypium hirsutum HOM05D006772 ORTHO05D008367 4.5e-14 81.6 110 43.6
Gorai.003G181100 Gossypium raimondii HOM05D006772 ORTHO05D008367 4.5e-14 81.6 110 43.6
Glyma.17G155300 Glycine max HOM05D006772 ORTHO05D008367 5.9e-14 81.3 119 45.4
COL.COLO4_17058 Corchorus olitorius HOM05D006772 ORTHO05D008367 7.7e-14 80.9 110 45.5
Gohir.A12G208800 Gossypium hirsutum HOM05D006772 ORTHO05D008367 7.7e-14 80.9 109 47.7
Gohir.D12G211500 Gossypium hirsutum HOM05D006772 ORTHO05D008367 7.7e-14 80.9 109 47.7
Gorai.008G227000 Gossypium raimondii HOM05D006772 ORTHO05D008367 7.7e-14 80.9 109 47.7
Medtr5g014370 Medicago truncatula HOM05D006772 ORTHO05D008367 7.7e-14 80.9 118 38.1
QL12p005837 Quercus lobata HOM05D006772 ORTHO05D008367 7.7e-14 80.9 112 44.6
Ah.12g054950 Amaranthus hybridus HOM05D006772 ORTHO05D008367 1.0e-13 80.5 109 42.2
HanXRQChr03g0084031 Helianthus annuus HOM05D006772 ORTHO05D008367 1.0e-13 80.5 117 41.0
Nitab4.5_0000804g0080 Nicotiana tabacum HOM05D006772 ORTHO05D008367 1.0e-13 80.5 113 41.6
Rhsim07G0126400 Rhododendron simsii HOM05D006772 ORTHO05D008367 1.0e-13 80.5 107 43.0
TWI15G0236 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 1.0e-13 80.5 107 43.9
MD06G1033600 Malus domestica HOM05D006772 ORTHO05D008367 1.3e-13 80.1 109 45.9
Lj2g0019736 Lotus japonicus HOM05D006772 ORTHO05D008367 1.7e-13 79.7 118 43.2
Psat2g173920 Pisum sativum HOM05D006772 ORTHO05D008367 2.2e-13 79.3 117 38.5
CDE08G0662 Ceratophyllum demersum HOM05D006772 ORTHO05D008367 3.8e-13 78.6 117 40.2
Atru.chr6.1734 Acer truncatum HOM05D006772 ORTHO05D008367 5.0e-13 78.2 109 43.1
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 5.0e-13 78.2 118 40.7
Nitab4.5_0001666g0010 Nicotiana tabacum HOM05D006772 ORTHO05D008367 5.0e-13 78.2 107 44.9
AL4G31320 Arabidopsis lyrata HOM05D006772 ORTHO05D008367 6.5e-13 77.8 117 41.0
Thecc.03G229400 Theobroma cacao HOM05D006772 ORTHO05D008367 6.5e-13 77.8 89 50.6
Thhalv10017432m.g Eutrema salsugineum HOM05D006772 ORTHO05D008367 8.5e-13 77.4 117 41.0
TWI60G0285 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 8.5e-13 77.4 107 42.1
Lsat_1_v5_gn_6_78680 Lactuca sativa HOM05D006772 ORTHO05D008367 1.1e-12 77.0 119 46.2
CANSAT21G2446 Cannabis sativa HOM05D006772 ORTHO05D008367 1.5e-12 76.6 135 38.5
MBI05_g46462_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 1.5e-12 76.6 112 42.9
AT2G35290 Arabidopsis thaliana HOM05D006772 ORTHO05D008367 1.9e-12 76.3 117 40.2
PGSC0003DMG400036785 Solanum tuberosum HOM05D006772 ORTHO05D008367 2.5e-12 75.9 91 48.4
CsaV3_3G049240 Cucumis sativus L. HOM05D006772 ORTHO05D008367 3.2e-12 75.5 93 54.8
PGR031G2239 Punica granatum HOM05D006772 ORTHO05D008367 3.2e-12 75.5 94 54.3
ECA240G4560 Erigeron canadensis HOM05D000236 ORTHO05D000192 4.2e-12 75.1 131 38.2
Lj4g0015139 Lotus japonicus HOM05D006772 ORTHO05D008367 4.2e-12 75.1 101 42.6
VMungo0251G2965 Vigna mungo HOM05D006772 ORTHO05D008367 4.2e-12 75.1 116 38.8
Sed0022952 Sechium edule HOM05D006772 ORTHO05D008367 7.2e-12 74.3 109 42.2
VMungo1215G2403 Vigna mungo HOM05D006772 ORTHO05D008367 7.2e-12 74.3 116 40.5
A05p10490 Brassica napus HOM05D006772 ORTHO05D008367 9.4e-12 73.9 117 40.2
BraA05t19987Z Brassica rapa HOM05D006772 ORTHO05D008367 9.4e-12 73.9 117 40.2
Lalb_Chr05g0213971 Lupinus albus HOM05D006772 ORTHO05D008367 9.4e-12 73.9 89 43.8
CARHR129440 Cardamine hirsuta HOM05D006772 ORTHO05D008367 1.2e-11 73.6 117 39.3
BcaB06g28837 Brassica carinata HOM05D006772 ORTHO05D008367 1.6e-11 73.2 116 38.8
BcaB02g09453 Brassica carinata HOM05D006772 ORTHO05D008367 2.1e-11 72.8 117 39.3
BcaB02g09458 Brassica carinata HOM05D006772 ORTHO05D008367 2.1e-11 72.8 117 39.3
BcaB02g09462 Brassica carinata HOM05D006772 ORTHO05D008367 2.1e-11 72.8 117 39.3
BcaC02g11632 Brassica carinata HOM05D006772 ORTHO05D008367 2.1e-11 72.8 117 39.3
C04p12890 Brassica napus HOM05D006772 ORTHO05D008367 2.1e-11 72.8 117 39.3
BolC4t22934H Brassica oleracea HOM05D006772 ORTHO05D008367 2.1e-11 72.8 117 39.3
Ca_24649_v3 Cicer arietinum L. HOM05D006772 ORTHO05D008367 2.1e-11 72.8 110 40.0
MELO3C003403.2 Cucumis melo HOM05D006772 ORTHO05D008367 2.7e-11 72.4 96 50.0
BcaB02g09448 Brassica carinata HOM05D006772 ORTHO05D008367 4.7e-11 71.6 117 38.5
C04p64260 Brassica napus HOM05D006772 ORTHO05D008367 4.7e-11 71.6 117 36.8
Lalb_Chr16g0379141 Lupinus albus HOM05D006772 ORTHO05D008367 4.7e-11 71.6 94 39.4
TPR.G7824 Trifolium pratense HOM05D006772 ORTHO05D008367 4.7e-11 71.6 116 40.5
A04p26870 Brassica napus HOM05D006772 ORTHO05D008367 8.0e-11 70.9 117 36.8
BraA04t18187Z Brassica rapa HOM05D006772 ORTHO05D008367 8.0e-11 70.9 117 36.8
Phvul.002G006800 Phaseolus vulgaris HOM05D006772 ORTHO05D008367 1.0e-10 70.5 94 43.6
THA.LOC104807956 Tarenaya hassleriana HOM05D006772 ORTHO05D008367 1.0e-10 70.5 108 40.7
Sp4g17500 Schrenkiella parvula HOM05D006772 ORTHO05D008367 1.4e-10 70.1 117 35.9
Glyma.11G043000 Glycine max HOM05D006772 ORTHO05D008367 1.8e-10 69.7 113 38.1
Sed0027084 Sechium edule HOM05D006772 ORTHO05D008367 1.8e-10 69.7 97 44.3
Carub.0004s1698 Capsella rubella HOM05D006772 ORTHO05D008367 2.3e-10 69.3 113 37.2
Lj4g0019114 Lotus japonicus HOM05D006772 ORTHO05D008367 2.3e-10 69.3 98 39.8
SEGI_37864 Sequoiadendron giganteum HOM05D006772 ORTHO05D008367 5.2e-10 68.2 101 44.6
Zm00001eb328090 Zea mays HOM05D024290 ORTHO05D049620 5.2e-10 68.2 142 35.9
BcaC02g07718 Brassica carinata HOM05D006772 ORTHO05D008367 8.8e-10 67.4 117 35.9
BolC4t27910H Brassica oleracea HOM05D006772 ORTHO05D008367 8.8e-10 67.4 117 35.9
Aa31LG9G15310 Aethionema arabicum HOM05D006772 ORTHO05D008367 1.2e-09 67.0 113 38.9
ATR0564G457 Amborella trichopoda HOM05D006772 ORTHO05D008367 1.5e-09 66.6 99 40.4
Gohir.A11G030300 Gossypium hirsutum HOM05D006772 ORTHO05D008367 4.9e-08 61.6 112 33.9
SEGI_18606 Sequoiadendron giganteum HOM05D006772 ORTHO05D008367 4.1e-07 58.5 120 37.5
MBI02_g18931_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 7.7e-06 54.3 125 35.2


User provided reference genes

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