Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 1.5e-220 769.2 387 100.0
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 7.4e-156 554.3 345 83.5
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 2.2e-139 499.6 404 69.1
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 8.5e-43 178.7 400 34.5
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 2.3e-40 170.6 426 34.3
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 2.3e-40 170.6 380 35.8
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 3.0e-40 170.2 412 33.3
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 3.9e-40 169.9 406 33.7
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 7.4e-39 165.6 407 34.6
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 7.4e-39 165.6 407 34.6
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 3.7e-38 163.3 416 33.7
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 4.8e-38 162.9 412 33.5
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 4.8e-38 162.9 433 34.6
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 1.1e-37 161.8 401 36.7
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 7.0e-37 159.1 388 33.0
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.6e-36 157.9 408 33.1
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 1.6e-36 157.9 401 31.7
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 2.0e-36 157.5 396 35.1
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 2.6e-36 157.1 405 34.8
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 3.5e-36 156.8 395 34.4
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 3.5e-36 156.8 402 34.1
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 7.7e-36 155.6 399 34.3
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 1.0e-35 155.2 416 32.7
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 1.3e-35 154.8 418 32.8
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 1.7e-35 154.5 398 32.7
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.2e-35 154.1 398 32.7
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 2.9e-35 153.7 383 36.8
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 2.9e-35 153.7 409 33.7
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 6.5e-35 152.5 405 34.6
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 8.5e-35 152.1 410 33.4
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 1.9e-34 151.0 408 33.6
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 1.9e-34 151.0 423 32.9
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 4.2e-34 149.8 407 33.9
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 5.5e-34 149.4 402 33.1
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 5.5e-34 149.4 437 32.3
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 5.5e-34 149.4 409 32.5
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 7.2e-34 149.1 398 33.4
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 7.2e-34 149.1 408 33.3
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 2.7e-33 147.1 416 34.1
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 3.6e-33 146.7 418 32.1
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 4.7e-33 146.4 237 42.6
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 1.0e-32 145.2 406 31.8
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 1.0e-32 145.2 404 32.2
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 1.8e-32 144.4 407 31.7
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 1.8e-32 144.4 422 32.2
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 2.3e-32 144.1 413 32.4
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 2.3e-32 144.1 412 32.5
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 2.3e-32 144.1 309 36.2
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 3.0e-32 143.7 433 32.1
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 3.0e-32 143.7 446 29.8
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 5.2e-32 142.9 411 30.7
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 5.2e-32 142.9 425 31.3
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 6.8e-32 142.5 328 36.0
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 6.8e-32 142.5 410 33.4
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 1.5e-31 141.4 431 31.8
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 2.6e-31 140.6 440 31.8
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 2.6e-31 140.6 415 31.8
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 3.4e-31 140.2 404 31.9
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 3.4e-31 140.2 412 31.8
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 3.4e-31 140.2 370 34.6
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 4.4e-31 139.8 410 33.2
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 5.7e-31 139.4 414 31.2
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 5.7e-31 139.4 423 30.7
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 7.5e-31 139.0 318 36.5
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 9.7e-31 138.7 451 29.7
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 1.7e-30 137.9 427 32.1
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 2.8e-30 137.1 442 30.5
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 3.7e-30 136.7 417 32.4
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 6.3e-30 136.0 329 32.8
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 8.3e-30 135.6 404 30.9
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 1.4e-29 134.8 439 29.8
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.8e-29 134.4 359 34.5
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 1.8e-29 134.4 447 30.2
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.4e-29 134.0 217 41.5
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.4e-29 134.0 217 41.5
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 2.4e-29 134.0 383 32.9
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 3.1e-29 133.7 427 31.4
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 3.1e-29 133.7 427 31.4
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 3.1e-29 133.7 413 31.5
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 5.3e-29 132.9 424 31.1
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 5.3e-29 132.9 439 29.6
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 5.3e-29 132.9 407 30.5
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 5.3e-29 132.9 222 39.6
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 5.3e-29 132.9 430 30.7
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 7.0e-29 132.5 435 30.6
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 7.0e-29 132.5 217 40.6
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 1.2e-28 131.7 223 38.1
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 1.6e-28 131.3 429 31.0
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 1.6e-28 131.3 413 32.2
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 2.0e-28 131.0 434 31.1
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 2.0e-28 131.0 267 37.8
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.0e-28 131.0 417 32.6
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 2.7e-28 130.6 396 29.5
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.5e-28 130.2 217 40.6
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 4.5e-28 129.8 426 30.8
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 4.5e-28 129.8 238 37.0
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 7.7e-28 129.0 403 33.7
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 1.0e-27 128.6 434 30.6
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 1.0e-27 128.6 223 38.6
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 1.3e-27 128.3 219 40.2
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.3e-27 128.3 383 31.3
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 1.7e-27 127.9 428 30.6
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.7e-27 127.9 407 30.2
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 2.2e-27 127.5 414 30.0
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 2.9e-27 127.1 405 32.1
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 2.9e-27 127.1 224 38.4
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 3.8e-27 126.7 236 36.0
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 5.0e-27 126.3 427 30.7
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 6.5e-27 125.9 451 29.9
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 6.5e-27 125.9 384 31.5
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 8.5e-27 125.6 320 34.7
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 8.5e-27 125.6 219 38.8
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.1e-26 125.2 410 30.2
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.5e-26 124.8 217 38.2
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 1.9e-26 124.4 220 37.3
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 1.9e-26 124.4 381 31.2
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 1.9e-26 124.4 229 37.6
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.9e-26 124.4 259 34.7
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 1.9e-26 124.4 236 36.9
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 1.9e-26 124.4 406 28.8
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 3.2e-26 123.6 427 31.1
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 4.2e-26 123.2 219 37.0
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.6e-25 121.3 341 32.3
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 2.7e-25 120.6 226 38.1
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 2.7e-25 120.6 298 35.2
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 6.1e-25 119.4 402 28.1
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 6.1e-25 119.4 232 36.6
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 6.1e-25 119.4 226 37.6
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 8.0e-25 119.0 403 28.0
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.8e-24 117.9 399 28.8
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 2.3e-24 117.5 237 34.6
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 3.0e-24 117.1 294 31.6
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.0e-24 116.7 241 32.0
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.5e-23 114.8 242 31.8
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 2.0e-23 114.4 231 35.9
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 2.6e-23 114.0 218 38.5
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 7.5e-23 112.5 364 30.5
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 2.2e-22 110.9 232 37.1
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 2.2e-22 110.9 380 27.4
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 3.7e-22 110.2 429 28.9
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 3.7e-22 110.2 235 33.2
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 4.8e-22 109.8 218 35.8
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 1.1e-21 108.6 429 28.7
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 5.4e-21 106.3 404 27.5
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 2.0e-20 104.4 429 28.0
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 3.5e-20 103.6 223 34.1
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 5.9e-20 102.8 401 29.4
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 5.9e-20 102.8 230 34.3
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 2.8e-17 94.0 234 29.9
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 2.8e-17 94.0 89 47.2
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 3.6e-17 93.6 286 31.1
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 1.8e-16 91.3 232 32.8
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 1.0e-11 75.5 433 24.7
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 1.5e-10 71.6 146 32.9
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.5e-10 70.9 277 28.9
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.5e-10 70.9 140 33.6
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.2e-09 68.6 186 28.5


User provided reference genes

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