Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb402020 Zea mays HOM05D004166 ORTHO05D004992 1.9e-27 125.2 67 100.0
Zm00001eb005680 Zea mays HOM05D004166 ORTHO05D004992 1.6e-26 122.1 67 97.0
Zm00001eb272450 Zea mays HOM05D004166 ORTHO05D004992 3.4e-24 114.4 63 93.7
Os03g0174800 Oryza sativa ssp. japonica HOM05D004166 ORTHO05D004992 1.7e-23 112.1 67 89.6
Zm00001eb018710 Zea mays HOM05D004166 ORTHO05D004992 9.3e-22 106.3 65 84.6
Zm00001eb256610 Zea mays HOM05D004166 ORTHO05D004992 2.1e-21 105.1 65 83.1
Zm00001eb076920 Zea mays HOM05D004166 ORTHO05D004992 6.0e-21 103.6 62 87.1
Zm00001eb056460 Zea mays HOM05D004166 ORTHO05D004992 2.3e-20 101.7 65 81.5
Zm00001eb114460 Zea mays HOM05D004166 ORTHO05D004992 1.1e-17 92.8 55 83.6
Zm00001eb124050 Zea mays HOM05D000586 ORTHO05D443244 1.2e-13 79.3 65 72.3
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 1.9e-11 72.0 67 58.2
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 1.6e-10 68.9 61 60.7
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 6.2e-10 67.0 57 63.2
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 8.2e-10 66.6 66 57.6
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.1e-09 66.2 66 60.6
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 1.4e-09 65.9 66 54.5
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 1.4e-09 65.9 66 53.0
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 2.4e-09 65.1 65 52.3
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 3.1e-09 64.7 66 56.1
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 3.1e-09 64.7 63 57.1
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 3.1e-09 64.7 61 55.7
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 3.1e-09 64.7 67 53.7
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 3.1e-09 64.7 58 55.2
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 4.0e-09 64.3 67 55.2
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.3e-09 63.9 63 57.1
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.3e-09 63.9 63 57.1
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 5.3e-09 63.9 63 55.6
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 5.3e-09 63.9 58 62.1
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 5.3e-09 63.9 58 60.3
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 5.3e-09 63.9 58 60.3
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 5.3e-09 63.9 61 57.4
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 5.3e-09 63.9 63 55.6
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 6.9e-09 63.5 66 53.0
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 6.9e-09 63.5 67 53.7
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 6.9e-09 63.5 67 53.7
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 6.9e-09 63.5 57 57.9
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 6.9e-09 63.5 58 55.2
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 6.9e-09 63.5 58 55.2
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 9.0e-09 63.2 63 57.1
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 9.0e-09 63.2 63 57.1
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 9.0e-09 63.2 67 53.7
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 9.0e-09 63.2 67 52.2
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 9.0e-09 63.2 66 53.0
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 9.0e-09 63.2 69 53.6
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 9.0e-09 63.2 61 59.0
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 1.2e-08 62.8 67 52.2
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 1.2e-08 62.8 67 52.2
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 1.2e-08 62.8 58 60.3
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.2e-08 62.8 67 53.7
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 1.2e-08 62.8 58 58.6
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 1.5e-08 62.4 66 47.0
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 1.5e-08 62.4 58 56.9
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 1.5e-08 62.4 67 53.7
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 2.0e-08 62.0 67 52.2
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 2.6e-08 61.6 66 50.0
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 3.4e-08 61.2 59 57.6
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 4.5e-08 60.8 58 58.6
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 4.5e-08 60.8 58 51.7
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 5.8e-08 60.5 58 53.4
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 7.6e-08 60.1 61 49.2
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 7.6e-08 60.1 61 49.2
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 7.6e-08 60.1 58 55.2
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 7.6e-08 60.1 61 57.4
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 1.0e-07 59.7 58 55.2
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 1.0e-07 59.7 58 58.6
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.3e-07 59.3 57 57.9
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.3e-07 59.3 57 57.9
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 1.3e-07 59.3 67 53.7
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 1.7e-07 58.9 58 53.4
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.7e-07 58.9 58 58.6
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 1.7e-07 58.9 58 58.6
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.7e-07 58.9 67 50.7
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 2.2e-07 58.5 66 48.5
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 2.2e-07 58.5 57 49.1
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.9e-07 58.2 57 56.1
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 2.9e-07 58.2 57 50.9
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 2.9e-07 58.2 57 52.6
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.8e-07 57.8 56 55.4
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 3.8e-07 57.8 64 50.0
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 4.9e-07 57.4 58 55.2
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 4.9e-07 57.4 66 48.5
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 4.9e-07 57.4 66 48.5
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 4.9e-07 57.4 58 55.2
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 4.9e-07 57.4 51 56.9
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 4.9e-07 57.4 58 44.8
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 6.5e-07 57.0 58 53.4
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 6.5e-07 57.0 58 51.7
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 6.5e-07 57.0 64 48.4
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 6.5e-07 57.0 66 53.0
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 6.5e-07 57.0 58 53.4
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 6.5e-07 57.0 58 53.4
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 6.5e-07 57.0 58 53.4
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 8.4e-07 56.6 58 53.4
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 8.4e-07 56.6 58 51.7
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 8.4e-07 56.6 58 51.7
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 8.4e-07 56.6 58 51.7
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 8.4e-07 56.6 58 53.4
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 8.4e-07 56.6 58 50.0
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 1.1e-06 56.2 66 50.0
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 1.1e-06 56.2 58 51.7
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.1e-06 56.2 58 55.2
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 1.1e-06 56.2 58 53.4
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 1.4e-06 55.8 58 51.7
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 1.4e-06 55.8 49 59.2
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 1.4e-06 55.8 58 48.3
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 1.9e-06 55.5 58 51.7
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.9e-06 55.5 54 55.6
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 1.9e-06 55.5 58 50.0
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 1.9e-06 55.5 58 51.7
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 2.5e-06 55.1 58 50.0
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 2.5e-06 55.1 64 46.9
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 2.5e-06 55.1 57 47.4
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 3.2e-06 54.7 57 49.1
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 4.2e-06 54.3 58 51.7
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 4.2e-06 54.3 57 49.1
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 4.2e-06 54.3 51 54.9
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 4.2e-06 54.3 58 46.6
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 5.5e-06 53.9 58 48.3
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 5.5e-06 53.9 55 56.4
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 5.5e-06 53.9 58 50.0
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 5.5e-06 53.9 57 47.4
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 5.5e-06 53.9 57 47.4
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 7.1e-06 53.5 58 48.3
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 7.1e-06 53.5 67 49.3


User provided reference genes

Program Settings