Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 1.6e-135 486.1 242 100.0
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 2.1e-100 369.4 196 94.9
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 1.1e-91 340.5 196 85.2
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 1.2e-87 327.0 198 80.8
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 6.0e-87 324.7 198 79.8
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 1.3e-86 323.6 198 79.8
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 1.7e-86 323.2 198 80.3
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.7e-86 323.2 198 80.3
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.7e-86 323.2 198 80.3
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 1.7e-86 323.2 198 79.8
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 2.3e-86 322.8 198 79.8
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 3.0e-86 322.4 198 80.3
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 5.1e-86 321.6 206 78.2
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 6.6e-86 321.2 198 79.3
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 6.6e-86 321.2 198 79.8
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 8.7e-86 320.9 198 79.8
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.7e-86 320.9 198 79.3
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.7e-86 320.9 198 79.3
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 1.1e-85 320.5 198 78.8
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 1.1e-85 320.5 197 79.2
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 1.5e-85 320.1 198 80.8
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 1.5e-85 320.1 198 79.8
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 1.9e-85 319.7 198 78.3
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 1.9e-85 319.7 198 78.8
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 1.9e-85 319.7 198 80.3
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 2.5e-85 319.3 198 80.3
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 4.3e-85 318.5 198 79.3
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 5.6e-85 318.2 198 78.8
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 7.3e-85 317.8 198 79.3
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 9.6e-85 317.4 198 77.8
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 1.6e-84 316.6 197 76.1
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 2.1e-84 316.2 192 81.8
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 2.1e-84 316.2 198 79.8
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 2.8e-84 315.8 198 80.3
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 3.6e-84 315.5 187 82.4
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 3.6e-84 315.5 194 79.9
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 3.6e-84 315.5 198 78.8
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 6.2e-84 314.7 198 78.3
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 6.2e-84 314.7 198 77.8
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 6.2e-84 314.7 198 77.8
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 6.2e-84 314.7 198 77.8
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 6.2e-84 314.7 198 78.8
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 8.1e-84 314.3 198 77.8
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 1.4e-83 313.5 192 80.7
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 1.4e-83 313.5 167 93.4
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 1.8e-83 313.2 192 80.2
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 4.0e-83 312.0 198 75.8
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 5.3e-83 311.6 202 76.7
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 6.9e-83 311.2 198 77.8
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 6.9e-83 311.2 213 73.7
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 6.9e-83 311.2 198 78.8
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 6.9e-83 311.2 198 77.8
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 9.0e-83 310.8 198 77.3
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 1.2e-82 310.5 198 77.3
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 1.2e-82 310.5 198 75.3
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 2.6e-82 309.3 198 75.8
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 5.8e-82 308.1 198 77.3
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 5.8e-82 308.1 198 76.8
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 5.8e-82 308.1 192 78.1
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 7.6e-82 307.8 198 74.7
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 1.7e-81 306.6 198 75.8
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 2.2e-81 306.2 198 76.3
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 2.2e-81 306.2 198 76.3
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 3.8e-81 305.4 192 77.6
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 3.8e-81 305.4 192 77.6
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 4.9e-81 305.1 195 78.5
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 6.4e-81 304.7 195 79.0
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 8.4e-81 304.3 194 77.8
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 8.4e-81 304.3 198 76.3
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 1.1e-80 303.9 198 76.3
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 1.1e-80 303.9 198 76.3
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 1.9e-80 303.1 198 76.8
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 2.4e-80 302.8 198 75.8
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 5.4e-80 301.6 198 75.8
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 7.1e-80 301.2 198 74.2
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 9.3e-80 300.8 199 75.9
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 9.3e-80 300.8 198 74.2
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 9.3e-80 300.8 198 74.2
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 1.2e-79 300.4 192 76.6
TPR.G12577 Trifolium pratense HOM05D005951 ORTHO05D007025 3.5e-79 298.9 192 77.1
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 4.6e-79 298.5 198 74.2
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 7.9e-79 297.7 197 73.6
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 1.0e-78 297.4 198 72.7
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 1.7e-78 296.6 198 73.2
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 2.3e-78 296.2 192 74.5
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 3.9e-78 295.4 197 72.1
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 5.1e-78 295.0 197 72.1
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 5.1e-78 295.0 197 72.1
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 5.1e-78 295.0 198 71.2
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 5.1e-78 295.0 197 74.1
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 1.1e-77 293.9 197 71.1
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 1.5e-77 293.5 197 74.6
BraA01t00476Z Brassica rapa HOM05D000526 ORTHO05D007025 1.9e-77 293.1 197 72.6
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 2.5e-77 292.7 198 71.7
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 2.5e-77 292.7 197 71.6
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 7.3e-77 291.2 193 73.1
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 9.6e-77 290.8 197 72.1
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 9.6e-77 290.8 198 71.7
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 1.6e-76 290.0 197 71.1
BcaC09g52137 Brassica carinata HOM05D005951 ORTHO05D007025 2.1e-76 289.7 197 71.6
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 2.1e-76 289.7 198 71.2
BolC1t00519H Brassica oleracea HOM05D000526 ORTHO05D007025 2.1e-76 289.7 197 71.6
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 2.1e-76 289.7 198 72.7
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 2.8e-76 289.3 198 71.7
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 3.6e-76 288.9 198 72.7
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 4.8e-76 288.5 194 76.8
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 6.2e-76 288.1 197 70.1
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 8.1e-76 287.7 197 70.6
unitig_899.g15181 Utricularia gibba HOM05D005951 ORTHO05D007025 1.1e-75 287.3 197 70.1
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 3.1e-75 285.8 190 73.7
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 4.0e-75 285.4 193 74.1
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 1.3e-73 280.4 197 69.5
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 1.5e-69 266.9 198 65.2
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 1.9e-69 266.5 281 52.3
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 2.5e-69 266.2 292 51.7
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 8.1e-68 261.2 198 68.2
Pp3c18_14720 Physcomitrium patens HOM05D005951 ORTHO05D007025 2.6e-66 256.1 195 63.1
Pp3c21_14860 Physcomitrium patens HOM05D005951 ORTHO05D007025 5.8e-66 255.0 195 62.6
SMO239G0051 Selaginella moellendorffii HOM05D005951 ORTHO05D007025 1.0e-65 254.2 192 63.0
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 1.0e-65 254.2 198 64.1
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 1.7e-65 253.4 197 64.0
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 2.2e-65 253.1 193 66.3
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 3.8e-65 252.3 197 64.5
BraA03t15230Z Brassica rapa HOM05D005951 ORTHO05D007025 9.3e-64 247.7 158 75.3
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 1.8e-62 243.4 173 69.4
CDE06G1359 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 1.9e-61 240.0 156 76.3
Sc08g0009170 Simmondsia chinensis HOM05D005951 ORTHO05D007025 4.1e-51 205.7 143 74.8
CBR_g16046 Chara braunii HOM05D005951 ORTHO05D007025 2.5e-45 186.4 174 54.0
Migut.L01596 Erythranthe guttata HOM05D005951 ORTHO05D007025 9.1e-43 177.9 197 51.8
CARHR241300 Cardamine hirsuta HOM05D005951 ORTHO05D007025 1.7e-41 173.7 118 66.1
AagrBONN_evm.TU.Sc2ySwM_117.912 Anthoceros agrestis HOM05D005951 ORTHO05D007025 1.1e-40 171.0 124 65.3
Cre12.g515650 Chlamydomonas reinhardtii HOM05D005951 ORTHO05D007025 8.8e-30 134.8 189 34.9
MD02G1101200 Malus domestica HOM05D005951 ORTHO05D007025 4.8e-28 129.0 96 71.9
PRCOL_00003879 Prasinoderma coloniale HOM05D005951 ORTHO05D007025 1.8e-22 110.5 151 37.7
SalBow6G6500 Salvia bowleyana HOM05D005951 ORTHO05D007025 1.2e-18 97.8 65 76.9
ATR0705G105 Amborella trichopoda HOM05D005951 ORTHO05D007025 6.6e-09 65.5 71 46.5


User provided reference genes

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