Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb401580 Zea mays HOM05D004438 ORTHO05D005256 7.2e-68 260.4 126 100.0
Zm00001eb006400 Zea mays HOM05D004438 ORTHO05D005256 1.7e-64 249.2 126 95.2
Os03g0185600 Oryza sativa ssp. japonica HOM05D004438 ORTHO05D005256 7.0e-63 243.8 126 93.7
PSO675G7198 Papaver somniferum HOM05D004438 ORTHO05D005256 1.8e-58 229.2 123 84.6
AUR62027160 Chenopodium quinoa HOM05D004438 ORTHO05D005256 3.0e-58 228.4 123 86.2
AUR62044399 Chenopodium quinoa HOM05D004438 ORTHO05D005256 3.0e-58 228.4 123 86.2
Haze_25054 Corylus avellana HOM05D004438 ORTHO05D005256 3.0e-58 228.4 121 87.6
Cfa002762 Carpinus fangiana HOM05D004438 ORTHO05D005256 5.2e-58 227.6 123 85.4
PSO541G1989 Papaver somniferum HOM05D004438 ORTHO05D005256 6.8e-58 227.3 123 83.7
Rhsim10G0149000 Rhododendron simsii HOM05D004438 ORTHO05D005256 8.9e-58 226.9 123 84.6
RcHm_v2.0_Chr2g0117091 Rosa chinensis HOM05D004438 ORTHO05D005256 8.9e-58 226.9 123 87.8
FvH4_1g22770 Fragaria vesca HOM05D004438 ORTHO05D005256 1.5e-57 226.1 123 87.0
FAN19G1036 Fragaria x ananassa HOM05D004438 ORTHO05D005256 1.5e-57 226.1 123 87.0
FAN23G1009 Fragaria x ananassa HOM05D004438 ORTHO05D005256 1.5e-57 226.1 123 87.0
FAN26G1829 Fragaria x ananassa HOM05D004438 ORTHO05D005256 1.5e-57 226.1 123 87.0
FAN28G0942 Fragaria x ananassa HOM05D004438 ORTHO05D005256 1.5e-57 226.1 123 87.0
CSS0020413 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 2.0e-57 225.7 123 82.9
MBI11_g03707_MAGBIO Magnolia biondii HOM05D004438 ORTHO05D005256 2.0e-57 225.7 123 83.7
Peaxi162Scf00106g00162 Petunia axillaris HOM05D004438 ORTHO05D005256 2.0e-57 225.7 124 83.1
CARHR278820 Cardamine hirsuta HOM05D004438 ORTHO05D005256 2.6e-57 225.3 123 82.9
Cpa.g.sc21.8 Carica papaya HOM05D004438 ORTHO05D005256 2.6e-57 225.3 123 82.9
Peaxi162Scf00979g00008 Petunia axillaris HOM05D004438 ORTHO05D005256 2.6e-57 225.3 123 83.7
TWI53G0984 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 2.6e-57 225.3 122 83.6
Solyc04g051710.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 3.4e-57 224.9 124 83.1
Sopen04g023090 Solanum pennellii HOM05D004438 ORTHO05D005256 3.4e-57 224.9 124 83.1
THA.LOC104799304 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 3.4e-57 224.9 123 83.7
MD15G1340400 Malus domestica HOM05D004438 ORTHO05D005256 4.4e-57 224.6 123 86.2
Ah.03g137490 Amaranthus hybridus HOM05D004438 ORTHO05D005256 5.7e-57 224.2 123 82.9
COL.COLO4_11000 Corchorus olitorius HOM05D004438 ORTHO05D005256 5.7e-57 224.2 123 82.1
Carub.0008s2564 Capsella rubella HOM05D004438 ORTHO05D005256 7.5e-57 223.8 123 83.7
Gorai.007G245000 Gossypium raimondii HOM05D004438 ORTHO05D005256 7.5e-57 223.8 123 81.3
Prupe.4G171500 Prunus persica HOM05D004438 ORTHO05D005256 7.5e-57 223.8 123 85.4
PGSC0003DMG400031197 Solanum tuberosum HOM05D004438 ORTHO05D005256 7.5e-57 223.8 124 82.3
Actinidia06107 Actinidia chinensis HOM05D004438 ORTHO05D005256 9.8e-57 223.4 123 82.1
Phvul.L002244 Phaseolus vulgaris HOM05D004438 ORTHO05D005256 9.8e-57 223.4 122 83.6
VMungo0720G0202 Vigna mungo HOM05D004438 ORTHO05D005256 9.8e-57 223.4 122 83.6
Ah.02g126620 Amaranthus hybridus HOM05D004438 ORTHO05D005256 1.3e-56 223.0 123 82.9
Cc10_g15830 Coffea canephora HOM05D004438 ORTHO05D005256 1.3e-56 223.0 123 83.7
Lsat_1_v5_gn_8_150501 Lactuca sativa HOM05D004438 ORTHO05D005256 1.3e-56 223.0 123 86.2
QL06p031963 Quercus lobata HOM05D004438 ORTHO05D005256 1.3e-56 223.0 123 82.9
SGA_v2.0_scaffold79G25619 Striga asiatica HOM05D004438 ORTHO05D005256 1.7e-56 222.6 123 82.9
ClCG01G016040 Citrullus lanatus HOM05D004438 ORTHO05D005256 2.2e-56 222.2 123 82.1
Dinv42684 Davidia involucrata HOM05D004438 ORTHO05D005256 2.2e-56 222.2 123 82.9
MD03G1238400 Malus domestica HOM05D004438 ORTHO05D005256 2.2e-56 222.2 123 85.4
Oeu027202.1 Olea europaea HOM05D004438 ORTHO05D005256 2.2e-56 222.2 123 81.3
AL8G42290 Arabidopsis lyrata HOM05D004438 ORTHO05D005256 3.7e-56 221.5 123 82.1
AT5G64816 Arabidopsis thaliana HOM05D004438 ORTHO05D005256 3.7e-56 221.5 123 82.1
MSTRG.9937 Avicennia marina HOM05D004438 ORTHO05D005256 3.7e-56 221.5 123 82.1
CsaV3_6G042320 Cucumis sativus L. HOM05D004438 ORTHO05D005256 3.7e-56 221.5 123 81.3
Duzib187G1770 Durio zibethinus HOM05D004438 ORTHO05D005256 3.7e-56 221.5 123 80.5
Nitab4.5_0000131g0360 Nicotiana tabacum HOM05D004438 ORTHO05D005256 3.7e-56 221.5 123 81.3
Nitab4.5_0003709g0100 Nicotiana tabacum HOM05D004438 ORTHO05D005256 3.7e-56 221.5 123 81.3
Thecc.01G114400 Theobroma cacao HOM05D004438 ORTHO05D005256 3.7e-56 221.5 123 81.3
Gohir.A11G197600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 4.9e-56 221.1 123 79.7
Potri.002G105400 Populus trichocarpa HOM05D004438 ORTHO05D005256 4.9e-56 221.1 123 82.1
Prupe.6G170300 Prunus persica HOM05D004438 ORTHO05D005256 4.9e-56 221.1 123 85.4
Dinv19477 Davidia involucrata HOM05D004438 ORTHO05D005256 6.4e-56 220.7 122 82.8
Glyma.01G200000 Glycine max HOM05D004438 ORTHO05D005256 6.4e-56 220.7 122 82.0
Lalb_Chr02g0150651 Lupinus albus HOM05D004438 ORTHO05D005256 6.4e-56 220.7 122 82.8
BcaB02g09832 Brassica carinata HOM05D004438 ORTHO05D005256 8.3e-56 220.3 123 81.3
BcaC01g02715 Brassica carinata HOM05D004438 ORTHO05D005256 8.3e-56 220.3 123 81.3
A06p31610 Brassica napus HOM05D004438 ORTHO05D005256 8.3e-56 220.3 123 81.3
C03p61350 Brassica napus HOM05D004438 ORTHO05D005256 8.3e-56 220.3 123 81.3
BolC3t18395H Brassica oleracea HOM05D004438 ORTHO05D005256 8.3e-56 220.3 123 81.3
BraA06t26098Z Brassica rapa HOM05D004438 ORTHO05D005256 8.3e-56 220.3 123 81.3
Potri.005G156400 Populus trichocarpa HOM05D004438 ORTHO05D005256 8.3e-56 220.3 121 83.5
Sp2g27890 Schrenkiella parvula HOM05D004438 ORTHO05D005256 8.3e-56 220.3 123 81.3
DCAR_009568 Daucus carota HOM05D004438 ORTHO05D005256 1.1e-55 219.9 123 83.7
Lj5g0016992 Lotus japonicus HOM05D004438 ORTHO05D005256 1.1e-55 219.9 122 82.8
CiPaw.03G133700 Carya illinoinensis HOM05D004438 ORTHO05D005256 1.4e-55 219.5 123 80.5
Glyma.10G190000 Glycine max HOM05D004438 ORTHO05D005256 1.4e-55 219.5 122 82.0
Sopen00g011470 Solanum pennellii HOM05D004438 ORTHO05D005256 1.4e-55 219.5 123 80.5
Gohir.D11G231900 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.8e-55 219.2 123 80.5
HanXRQChr12g0372061 Helianthus annuus HOM05D004438 ORTHO05D005256 1.8e-55 219.2 123 84.6
Medtr1g073620 Medicago truncatula HOM05D004438 ORTHO05D005256 1.8e-55 219.2 122 82.8
QL01p009111 Quercus lobata HOM05D004438 ORTHO05D005256 2.4e-55 218.8 123 81.3
Aqoxy2G01099 Aquilegia oxysepala HOM05D004438 ORTHO05D005256 3.2e-55 218.4 123 81.3
ECA233G2293 Erigeron canadensis HOM05D004438 ORTHO05D005256 3.2e-55 218.4 123 84.6
Thhalv10005124m.g Eutrema salsugineum HOM05D004438 ORTHO05D005256 3.2e-55 218.4 123 80.5
RcHm_v2.0_Chr5g0031621 Rosa chinensis HOM05D000965 ORTHO05D000842 3.2e-55 218.4 122 82.8
Solyc04g076260.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 3.2e-55 218.4 123 80.5
TPR.G28848 Trifolium pratense HOM05D004438 ORTHO05D005256 3.2e-55 218.4 122 81.1
CAN.G475.35 Capsicum annuum HOM05D004438 ORTHO05D005256 4.1e-55 218.0 123 81.3
Gohir.A11G053800 Gossypium hirsutum HOM05D004438 ORTHO05D005256 4.1e-55 218.0 123 78.0
THA.LOC104819312 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 4.1e-55 218.0 123 80.5
TAR381G0625 Trochodendron aralioides HOM05D004438 ORTHO05D005256 5.4e-55 217.6 123 79.7
Aa31LG1G17110 Aethionema arabicum HOM05D004438 ORTHO05D005256 7.0e-55 217.2 123 81.3
MELO3C007474.2 Cucumis melo HOM05D004438 ORTHO05D005256 7.0e-55 217.2 123 80.5
DCAR_009565 Daucus carota HOM05D004438 ORTHO05D005256 7.0e-55 217.2 123 82.9
MD15G1331400 Malus domestica HOM05D004438 ORTHO05D005256 7.0e-55 217.2 123 83.7
vmacro18638 Vaccinium macrocarpon HOM05D004438 ORTHO05D005256 9.2e-55 216.9 123 80.5
SalBow3G3218 Salvia bowleyana HOM05D004438 ORTHO05D005256 1.2e-54 216.5 123 78.9
PGSC0003DMG400009364 Solanum tuberosum HOM05D004438 ORTHO05D005256 1.2e-54 216.5 123 80.5
TWI74G1039 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 1.2e-54 216.5 119 81.5
TAR625G0091 Trochodendron aralioides HOM05D004438 ORTHO05D005256 1.2e-54 216.5 123 78.9
TAR625G0287 Trochodendron aralioides HOM05D004438 ORTHO05D005256 1.2e-54 216.5 125 77.6
Gohir.D11G057300 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.6e-54 216.1 123 77.2
SGA_v2.0_scaffold308G48110 Striga asiatica HOM05D004438 ORTHO05D005256 1.6e-54 216.1 123 79.7
Atru.chr13.1020 Acer truncatum HOM05D004438 ORTHO05D005256 2.7e-54 215.3 123 79.7
Migut.N00230 Erythranthe guttata HOM05D004438 ORTHO05D005256 2.7e-54 215.3 123 79.7
Gohir.A10G084200 Gossypium hirsutum HOM05D004438 ORTHO05D005256 2.7e-54 215.3 123 78.0
CANSAT01G2942 Cannabis sativa HOM05D004438 ORTHO05D005256 3.5e-54 214.9 123 81.3
Gorai.011G114100 Gossypium raimondii HOM05D004438 ORTHO05D005256 3.5e-54 214.9 123 78.0
Sed0014495 Sechium edule HOM05D004438 ORTHO05D005256 3.5e-54 214.9 123 78.0
Sed0003177 Sechium edule HOM05D004438 ORTHO05D005256 4.6e-54 214.5 123 78.0
Eucgr.F02140 Eucalyptus grandis HOM05D004438 ORTHO05D005256 5.9e-54 214.2 123 78.0
Glyma.20G200800 Glycine max HOM05D004438 ORTHO05D005256 5.9e-54 214.2 122 77.9
CAN.G344.10 Capsicum annuum HOM05D004438 ORTHO05D005256 1.0e-53 213.4 124 78.2
Gohir.D10G104600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.0e-53 213.4 123 77.2
Ciclev10002841m.g Citrus clementina HOM05D004438 ORTHO05D005256 1.3e-53 213.0 123 77.2
HPP92_015825 Vanilla planifolia HOM05D004438 ORTHO05D005256 2.3e-53 212.2 122 77.9
Nn5g29898 Nelumbo nucifera HOM05D004438 ORTHO05D005256 5.0e-53 211.1 123 78.9
unitig_699.g19132 Utricularia gibba HOM05D004438 ORTHO05D005256 1.1e-52 209.9 123 78.0
GSVIVG01009169001 Vitis vinifera HOM05D004438 ORTHO05D005256 1.1e-52 209.9 123 78.9
Manes.10G131700 Manihot esculenta HOM05D004438 ORTHO05D005256 2.5e-52 208.8 123 78.0
Psat6g129880 Pisum sativum HOM05D004438 ORTHO05D005256 3.3e-52 208.4 122 75.4
Nitab4.5_0000184g0290 Nicotiana tabacum HOM05D004438 ORTHO05D005256 5.6e-52 207.6 115 81.7
SalBow2G1806 Salvia bowleyana HOM05D004438 ORTHO05D005256 5.6e-52 207.6 124 75.8
Psat7g208520 Pisum sativum HOM05D004438 ORTHO05D005256 3.6e-51 204.9 122 76.2
Sc03g0004400 Simmondsia chinensis HOM05D004438 ORTHO05D005256 6.2e-51 204.1 115 80.9
EL10Ac6g13106 Beta vulgaris HOM05D004438 ORTHO05D005256 1.2e-49 199.9 107 86.0
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 1.5e-49 199.5 112 83.0
Manes.02G145100 Manihot esculenta HOM05D004438 ORTHO05D005256 2.6e-49 198.7 110 85.5
Sabra02G0082700 Salix brachista HOM05D004438 ORTHO05D005256 3.4e-49 198.4 112 82.1
FvH4_3g18771 Fragaria vesca HOM05D004438 ORTHO05D005256 4.4e-49 198.0 115 81.7
Sabra05G0119900 Salix brachista HOM05D004438 ORTHO05D005256 1.3e-48 196.4 112 80.4
Sc23g0000680 Simmondsia chinensis HOM05D004438 ORTHO05D005256 2.9e-48 195.3 120 73.3
FAN16G1755 Fragaria x ananassa HOM05D004438 ORTHO05D005256 1.1e-47 193.4 108 84.3
Lalb_Chr21g0312471 Lupinus albus HOM05D004438 ORTHO05D005256 1.4e-47 193.0 118 75.4
Nitab4.5_0004977g0040 Nicotiana tabacum HOM05D004438 ORTHO05D005256 1.4e-47 193.0 107 82.2
ATR1132G028 Amborella trichopoda HOM05D004438 ORTHO05D005256 1.9e-47 192.6 128 71.9
Gorai.007G062500 Gossypium raimondii HOM05D004438 ORTHO05D005256 7.0e-47 190.7 123 71.5
SHI31196 Sapria himalayana HOM05D004438 ORTHO05D005256 2.0e-46 189.1 122 70.5
Nn1g08461 Nelumbo nucifera HOM05D004438 ORTHO05D005256 1.3e-45 186.4 103 82.5
TWI56G0149 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 2.3e-45 185.7 124 71.8
FAN11G0727 Fragaria x ananassa HOM05D000965 ORTHO05D000842 7.3e-44 180.6 98 85.7
Duzib264G0014 Durio zibethinus HOM05D004438 ORTHO05D005256 1.2e-43 179.9 101 82.2
FAN21G3234 Fragaria x ananassa HOM05D000965 ORTHO05D000842 3.6e-43 178.3 98 83.7
Mapoly0031s0095 Marchantia polymorpha HOM05D004438 ORTHO05D005256 6.2e-43 177.6 123 67.5
Migut.G00404 Erythranthe guttata HOM05D004438 ORTHO05D005256 8.1e-43 177.2 131 67.2
Nitab4.5_0004977g0030 Nicotiana tabacum HOM05D004438 ORTHO05D005256 6.8e-42 174.1 89 87.6
AagrBONN_evm.TU.Sc2ySwM_117.295 Anthoceros agrestis HOM05D004438 ORTHO05D005256 8.9e-42 173.7 126 61.9
Oeu028520.2 Olea europaea HOM05D004438 ORTHO05D005256 1.1e-39 166.8 102 77.5
Pp3c22_12110 Physcomitrium patens HOM05D004438 ORTHO05D005256 1.4e-39 166.4 120 62.5
SEGI_36857 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 2.4e-39 165.6 88 85.2
CSS0036861 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 3.2e-39 165.2 98 79.6
COL.COLO4_35234 Corchorus olitorius HOM05D004438 ORTHO05D005256 1.7e-37 159.5 129 62.8
Rhsim08G0005900 Rhododendron simsii HOM05D004438 ORTHO05D005256 1.1e-36 156.8 102 71.6
Pp3c19_18370 Physcomitrium patens HOM05D004438 ORTHO05D005256 9.9e-33 143.7 120 55.0
SEGI_35678 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 1.1e-31 140.2 122 54.1
AagrBONN_evm.TU.Sc2ySwM_344.1988 Anthoceros agrestis HOM05D004438 ORTHO05D005256 1.2e-30 136.7 121 53.7
Gohir.1Z049407 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.2e-30 136.7 67 88.1
arahy.Tifrunner.gnm1.ann1.7JV24P Arachis hypogaea HOM05D004438 ORTHO05D005256 2.6e-25 119.0 57 87.7
CSS0034319 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 2.6e-25 119.0 111 55.9
CSS0009061 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 3.8e-24 115.2 107 56.1
PRCOL_00001176 Prasinoderma coloniale HOM05D004438 ORTHO05D005256 4.2e-23 111.7 82 56.1
ATR0049G041 Amborella trichopoda HOM05D004438 ORTHO05D005256 5.1e-21 104.8 126 42.9
MCO08G336 Micromonas commoda HOM05D004438 ORTHO05D005256 5.1e-21 104.8 99 50.5
Cre07.g313800 Chlamydomonas reinhardtii HOM05D004438 ORTHO05D005256 1.6e-19 99.8 74 56.8
CiPaw.04G091100 Carya illinoinensis HOM05D004438 ORTHO05D005256 1.1e-18 97.1 62 72.6
CSS0036545 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 4.2e-15 85.1 43 86.0
Hund21738 Selenicereus undatus HOM05D004438 ORTHO05D005256 2.8e-11 72.4 35 91.4
CBR_g51299 Chara braunii HOM05D004438 ORTHO05D005256 4.5e-09 65.1 35 80.0
SalBow2G3602 Salvia bowleyana HOM05D004438 ORTHO05D005256 5.8e-09 64.7 32 84.4
SalBow1G8643 Salvia bowleyana HOM05D000379 ORTHO05D000254 4.2e-07 58.5 33 72.7


User provided reference genes

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