Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb401420 Zea mays HOM05D004950 ORTHO05D004838 1.5e-226 789.3 431 100.0
Zm00001eb006740 Zea mays HOM05D004950 ORTHO05D004838 1.3e-201 706.4 432 91.0
Os03g0189300 Oryza sativa ssp. japonica HOM05D004950 ORTHO05D004838 2.3e-150 536.2 445 69.4
Zm00001eb081260 Zea mays HOM05D020839 ORTHO05D004838 9.1e-46 188.7 347 40.6
Zm00001eb423860 Zea mays HOM05D020839 ORTHO05D004838 4.2e-43 179.9 451 34.6
Os04g0450900 Oryza sativa ssp. japonica HOM05D020839 ORTHO05D004838 2.4e-38 164.1 486 33.3
Zm00001eb199080 Zea mays HOM05D004950 ORTHO05D004838 7.8e-37 159.1 337 38.0
vmacro12982 Vaccinium macrocarpon HOM05D004950 ORTHO05D004838 3.1e-33 147.1 353 36.0
Os08g0481100 Oryza sativa ssp. japonica HOM05D004950 ORTHO05D004838 6.8e-33 146.0 363 34.7
Sc16g0000220 Simmondsia chinensis HOM05D004950 ORTHO05D004838 6.8e-33 146.0 313 37.1
Haze_24857 Corylus avellana HOM05D004950 ORTHO05D004838 1.2e-32 145.2 356 35.1
Cfa002603 Carpinus fangiana HOM05D004950 ORTHO05D004838 4.1e-30 136.7 356 34.0
Lalb_Chr08g0230971 Lupinus albus HOM05D004950 ORTHO05D004838 3.5e-29 133.7 366 33.1
DCAR_003473 Daucus carota HOM05D004950 ORTHO05D004838 1.7e-28 131.3 456 31.4
Lj4A899T58 Lonicera japonica HOM05D004950 ORTHO05D004838 1.7e-28 131.3 309 34.3
PGR102G2692 Punica granatum HOM05D004950 ORTHO05D004838 3.9e-28 130.2 348 33.3
Sabra07G0079900 Salix brachista HOM05D004950 ORTHO05D004838 3.9e-28 130.2 367 33.5
Lj2C540T9 Lonicera japonica HOM05D004950 ORTHO05D004838 1.2e-26 125.2 260 37.3
HanXRQChr14g0445061 Helianthus annuus HOM05D004950 ORTHO05D004838 4.7e-26 123.2 260 34.2
CsaV3_4G004650 Cucumis sativus L. HOM05D004950 ORTHO05D004838 6.2e-26 122.9 299 32.8
CsaV3_UNG131010 Cucumis sativus L. HOM05D004950 ORTHO05D004838 6.2e-26 122.9 299 32.8
CsaV3_UNG154160 Cucumis sativus L. HOM05D004950 ORTHO05D004838 6.2e-26 122.9 299 32.8
Actinidia28833 Actinidia chinensis HOM05D000288 ORTHO05D004838 1.1e-25 122.1 290 34.1
TAR376G0363 Trochodendron aralioides HOM05D004950 ORTHO05D004838 1.8e-25 121.3 263 38.0
AUR62003257 Chenopodium quinoa HOM05D004950 ORTHO05D004838 3.1e-25 120.6 345 31.6
MD11G1200900 Malus domestica HOM05D004950 ORTHO05D004838 3.1e-25 120.6 319 33.2
Dinv13228 Davidia involucrata HOM05D004950 ORTHO05D004838 2.0e-24 117.9 285 37.5
Oeu033042.1 Olea europaea HOM05D004950 ORTHO05D004838 3.4e-24 117.1 374 31.3
HPP92_002322 Vanilla planifolia HOM05D004950 ORTHO05D004838 3.4e-24 117.1 370 28.9
CiPaw.04G103200 Carya illinoinensis HOM05D004950 ORTHO05D004838 4.4e-24 116.7 384 31.8
Atru.chr3.1354 Acer truncatum HOM05D004950 ORTHO05D004838 1.7e-23 114.8 357 31.9
Lsat_1_v5_gn_2_66121 Lactuca sativa HOM05D004950 ORTHO05D004838 6.4e-23 112.8 215 38.6
Sp7g35850 Schrenkiella parvula HOM05D004950 ORTHO05D004838 6.4e-23 112.8 362 30.7
MELO3C017599.2 Cucumis melo HOM05D004950 ORTHO05D004838 3.2e-22 110.5 283 32.9
Lj6g0021918 Lotus japonicus HOM05D004950 ORTHO05D004838 5.4e-22 109.8 375 30.4
PGSC0003DMG400016794 Solanum tuberosum HOM05D004950 ORTHO05D004838 7.1e-22 109.4 343 31.8
Cpa.g.sc55.78 Carica papaya HOM05D004950 ORTHO05D004838 1.2e-21 108.6 360 31.9
Oeu012397.1 Olea europaea HOM05D004950 ORTHO05D004838 1.6e-21 108.2 355 31.0
AUR62027212 Chenopodium quinoa HOM05D004950 ORTHO05D004838 4.6e-21 106.7 356 31.2
Medtr3g086890 Medicago truncatula HOM05D004950 ORTHO05D004838 4.6e-21 106.7 323 30.7
ECA238G0370 Erigeron canadensis HOM05D004950 ORTHO05D004838 7.8e-21 105.9 307 31.6
unitig_32.g10703 Utricularia gibba HOM05D004950 ORTHO05D004838 1.3e-20 105.1 291 31.6
DCAR_014205 Daucus carota HOM05D004950 ORTHO05D004838 1.7e-20 104.8 309 32.4
Psat2g012840 Pisum sativum HOM05D004950 ORTHO05D004838 2.3e-20 104.4 330 30.6
AL7G12330 Arabidopsis lyrata HOM05D004950 ORTHO05D004838 6.6e-20 102.8 358 30.7
EL10As13g24047 Beta vulgaris HOM05D004950 ORTHO05D004838 1.1e-19 102.1 252 34.5
CAN.G905.19 Capsicum annuum HOM05D004950 ORTHO05D004838 2.5e-19 100.9 376 30.6
Ah.02g126160 Amaranthus hybridus HOM05D004950 ORTHO05D004838 3.3e-19 100.5 364 29.4
FAN19G3038 Fragaria x ananassa HOM05D004950 ORTHO05D004838 4.3e-19 100.1 351 30.2
FAN28G2730 Fragaria x ananassa HOM05D004950 ORTHO05D004838 4.3e-19 100.1 351 29.9
Prupe.6G192500 Prunus persica HOM05D004950 ORTHO05D004838 4.3e-19 100.1 352 30.7
Sed0023595 Sechium edule HOM05D004950 ORTHO05D004838 5.6e-19 99.8 344 29.7
DCAR_016618 Daucus carota HOM05D004950 ORTHO05D004838 1.2e-18 98.6 372 28.0
AT4G40020 Arabidopsis thaliana HOM05D004950 ORTHO05D004838 1.6e-18 98.2 170 38.8
CARHR246650 Cardamine hirsuta HOM05D004950 ORTHO05D004838 1.6e-18 98.2 170 37.6
Os02g0572600 Oryza sativa ssp. japonica HOM05D020839 ORTHO05D004838 2.1e-18 97.8 403 27.5
MSTRG.3758 Avicennia marina HOM05D004950 ORTHO05D004838 2.8e-18 97.4 134 47.0
PGSC0003DMG400016153 Solanum tuberosum HOM05D004950 ORTHO05D004838 2.8e-18 97.4 461 28.0
MD03G1184100 Malus domestica HOM05D004950 ORTHO05D004838 3.6e-18 97.1 327 30.0
CAN.G712.13 Capsicum annuum HOM05D004950 ORTHO05D004838 3.1e-17 94.0 342 28.9
FvH4_1g20290 Fragaria vesca HOM05D004950 ORTHO05D004838 5.2e-17 93.2 352 29.5
C01p01070 Brassica napus HOM05D004950 ORTHO05D004838 6.8e-17 92.8 356 30.3
THA.LOC104807862 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 8.9e-17 92.4 328 31.1
BraA01t00092Z Brassica rapa HOM05D004950 ORTHO05D004838 1.5e-16 91.7 357 30.3
A01p00940 Brassica napus HOM05D004950 ORTHO05D004838 2.6e-16 90.9 357 30.0
BolC1t00104H Brassica oleracea HOM05D004950 ORTHO05D004838 2.6e-16 90.9 353 29.2
TPR.G16026 Trifolium pratense HOM05D004950 ORTHO05D004838 9.9e-16 89.0 330 28.8
PSO302G0004 Papaver somniferum HOM05D004950 ORTHO05D004838 2.9e-15 87.4 222 32.4
BraA09t37775Z Brassica rapa HOM05D004950 ORTHO05D004838 6.4e-15 86.3 213 33.8
Thhalv10027577m.g Eutrema salsugineum HOM05D004950 ORTHO05D004838 6.4e-15 86.3 124 43.5
Glyma.18G015400 Glycine max HOM05D004950 ORTHO05D004838 6.4e-15 86.3 372 27.7
Solyc07g009520.2 Solanum lycopersicum HOM05D004950 ORTHO05D004838 6.4e-15 86.3 235 29.8
Ca_16511_v3 Cicer arietinum L. HOM05D004950 ORTHO05D004838 1.1e-14 85.5 388 28.4
Eucgr.H04743 Eucalyptus grandis HOM05D004950 ORTHO05D004838 1.4e-14 85.1 452 26.5
Sabra05G0059200 Salix brachista HOM05D004950 ORTHO05D004838 1.4e-14 85.1 332 29.8
Nn1g05445 Nelumbo nucifera HOM05D004950 ORTHO05D004838 1.9e-14 84.7 350 28.9
Rhsim08G0013200 Rhododendron simsii HOM05D004950 ORTHO05D004838 4.1e-14 83.6 227 30.4
BcaNung00933 Brassica carinata HOM05D004950 ORTHO05D004838 5.4e-14 83.2 128 43.0
SGA_v2.0_scaffold115G32166 Striga asiatica HOM05D004950 ORTHO05D004838 5.4e-14 83.2 214 33.2
HPP92_027242 Vanilla planifolia HOM05D004950 ORTHO05D004838 7.1e-14 82.8 99 49.5
Zm00001eb182800 Zea mays HOM05D020839 ORTHO05D004838 7.1e-14 82.8 393 26.2
MBI02_g33232_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004838 9.2e-14 82.4 145 38.6
Gohir.D11G054550 Gossypium hirsutum HOM05D004950 ORTHO05D004838 1.6e-13 81.6 409 25.9
A09p21730 Brassica napus HOM05D004950 ORTHO05D004838 2.7e-13 80.9 280 30.4
Peaxi162Scf00383g01014 Petunia axillaris HOM05D004950 ORTHO05D004838 4.6e-13 80.1 430 28.1
CsaV3_UNG223520 Cucumis sativus L. HOM05D004950 ORTHO05D004838 6.0e-13 79.7 188 35.1
GSVIVG01003422001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.0e-12 79.0 268 31.3
PSO675G9110 Papaver somniferum HOM05D004950 ORTHO05D004838 2.3e-12 77.8 129 41.1
Manes.12G130350 Manihot esculenta HOM05D002324 ORTHO05D002380 3.0e-12 77.4 309 28.2
Glyma.11G241600 Glycine max HOM05D004950 ORTHO05D004838 5.1e-12 76.6 313 28.8
SalBow5G3597 Salvia bowleyana HOM05D004950 ORTHO05D004838 5.1e-12 76.6 214 33.2
Os04g0592400 Oryza sativa ssp. japonica HOM05D002657 ORTHO05D003059 6.6e-12 76.3 202 30.7
Carub.0007s0199 Capsella rubella HOM05D004950 ORTHO05D004838 8.6e-12 75.9 335 26.3
PSO541G5545 Papaver somniferum HOM05D004950 ORTHO05D004838 8.6e-12 75.9 219 31.5
Aqoxy6G00721 Aquilegia oxysepala HOM05D004950 ORTHO05D004838 1.5e-11 75.1 325 27.7
Cc07_g14660 Coffea canephora HOM05D004950 ORTHO05D004838 1.5e-11 75.1 142 40.1
Gorai.007G059800 Gossypium raimondii HOM05D004950 ORTHO05D004838 4.3e-11 73.6 337 26.1
Nitab4.5_0001874g0100 Nicotiana tabacum HOM05D004950 ORTHO05D004838 4.3e-11 73.6 273 30.4
THA.LOC104824888 Tarenaya hassleriana HOM05D004950 ORTHO05D004838 4.3e-11 73.6 335 26.9
unitig_748.g8651 Utricularia gibba HOM05D004950 ORTHO05D004838 4.3e-11 73.6 349 29.5
HPP92_016777 Vanilla planifolia HOM05D004950 ORTHO05D004838 4.3e-11 73.6 147 39.5
Lalb_Chr11g0075431 Lupinus albus HOM05D004950 ORTHO05D004838 5.6e-11 73.2 276 28.6
CiPaw.03G145300 Carya illinoinensis HOM05D004950 ORTHO05D004838 9.6e-11 72.4 341 27.9
Ciclev10026989m.g Citrus clementina HOM05D004950 ORTHO05D000003 1.6e-10 71.6 318 27.7
Sopen11g004990 Solanum pennellii HOM05D004950 ORTHO05D004838 1.6e-10 71.6 461 26.5
Zm00001eb024910 Zea mays HOM05D002657 ORTHO05D003059 1.6e-10 71.6 411 26.0
CDE10G1352 Ceratophyllum demersum HOM05D004950 ORTHO05D004838 3.6e-10 70.5 315 28.6
C04p34940 Brassica napus HOM05D004950 ORTHO05D004838 4.7e-10 70.1 242 30.2
BolC4t25048H Brassica oleracea HOM05D004950 ORTHO05D004838 4.7e-10 70.1 242 30.2
Solyc11g010210.1 Solanum lycopersicum HOM05D004950 ORTHO05D004838 4.7e-10 70.1 260 28.1
Solyc06g072730.4 Solanum lycopersicum HOM05D002657 ORTHO05D003059 6.2e-10 69.7 206 33.5
HanXRQChr14g0445041 Helianthus annuus HOM05D004950 ORTHO05D004838 8.1e-10 69.3 278 27.3
TWI74G0620 Tripterygium wilfordii HOM05D004950 ORTHO05D004838 8.1e-10 69.3 135 39.3
ClCG07G017420 Citrullus lanatus HOM05D004950 ORTHO05D004838 1.4e-09 68.6 278 27.7
Gorai.007G348400 Gossypium raimondii HOM05D002657 ORTHO05D003059 1.4e-09 68.6 337 25.5
Zm00001eb244690 Zea mays HOM05D020839 ORTHO05D004838 2.4e-09 67.8 387 24.5
Phvul.001G253600 Phaseolus vulgaris HOM05D004950 ORTHO05D004838 5.2e-09 66.6 310 27.1
Potri.005G072400 Populus trichocarpa HOM05D004950 ORTHO05D004838 6.8e-09 66.2 369 26.8
Gohir.A11G051150 Gossypium hirsutum HOM05D004950 ORTHO05D004838 8.9e-09 65.9 366 26.0
Ah.03g142010 Amaranthus hybridus HOM05D004950 ORTHO05D004838 1.2e-08 65.5 261 28.0
CSS0021212 Camellia sinensis var. sinensis HOM05D004950 ORTHO05D004838 1.5e-08 65.1 254 27.2
Nn1g05150 Nelumbo nucifera HOM05D002657 ORTHO05D003059 2.6e-08 64.3 399 24.8
Gohir.A11G303100 Gossypium hirsutum HOM05D002657 ORTHO05D003059 4.4e-08 63.5 337 24.9
HanXRQChr10g0314761 Helianthus annuus HOM05D004950 ORTHO05D004838 4.4e-08 63.5 281 27.8
TWI60G0601 Tripterygium wilfordii HOM05D002657 ORTHO05D003059 7.6e-08 62.8 401 24.7
VMungo1383G3674 Vigna mungo HOM05D004950 ORTHO05D004838 7.6e-08 62.8 224 30.8
MBI05_g36223_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D003059 9.9e-08 62.4 212 30.2
Sopen05g029920 Solanum pennellii HOM05D004950 ORTHO05D004838 9.9e-08 62.4 339 24.8
Duzib264G0159 Durio zibethinus HOM05D004950 ORTHO05D004838 1.3e-07 62.0 273 26.4
Potri.007G096600 Populus trichocarpa HOM05D004950 ORTHO05D004838 2.2e-07 61.2 371 26.4
CDE10G1056 Ceratophyllum demersum HOM05D002657 ORTHO05D004838 2.9e-07 60.8 124 39.5
TAR375G0807 Trochodendron aralioides HOM05D002657 ORTHO05D003059 2.9e-07 60.8 227 26.9
HanXRQChr14g0445051 Helianthus annuus HOM05D004950 ORTHO05D004838 3.8e-07 60.5 135 31.9
RcHm_v2.0_Chr2g0112431 Rosa chinensis HOM05D004950 ORTHO05D004838 6.4e-07 59.7 328 26.2
QL06p048197 Quercus lobata HOM05D004950 ORTHO05D004838 1.1e-06 58.9 393 24.9
TWI53G1075 Tripterygium wilfordii HOM05D004950 ORTHO05D004838 1.1e-06 58.9 375 25.6
Dinv29136 Davidia involucrata HOM05D002657 ORTHO05D003059 1.9e-06 58.2 220 27.3
unitig_32.g11809 Utricularia gibba HOM05D004950 ORTHO05D004838 1.9e-06 58.2 130 36.2
Thhalv10012674m.g Eutrema salsugineum HOM05D002657 ORTHO05D003059 2.4e-06 57.8 240 30.0
Nitab4.5_0000571g0050 Nicotiana tabacum HOM05D004950 ORTHO05D004838 3.2e-06 57.4 261 26.1
CAN.G33.13 Capsicum annuum HOM05D004950 ORTHO05D004838 4.2e-06 57.0 303 26.7
Nitab4.5_0000128g0260 Nicotiana tabacum HOM05D000288 ORTHO05D004838 4.2e-06 57.0 363 23.7
HPP92_020910 Vanilla planifolia HOM05D002657 ORTHO05D003059 7.1e-06 56.2 177 28.2
Rhsim10G0167200 Rhododendron simsii HOM05D004950 ORTHO05D004838 9.3e-06 55.8 138 34.8


User provided reference genes

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